BAC Information

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BAC

Clone NameB6Ng01-239E16
Chromosome9 (Build37)
Map Location 74,615,757 - 74,764,868
singlet/doubletdoublet
Overlap geneOnecut1
Upstream geneUnc13c, Wdr72, Nr1h2-ps, LOC100040764
Downstream geneBC031353, Arpp19, LOC100040812, Myo5a, LOC677501, Myo5c, Gnb5, Bcl2l10, LOC384954, Mapk6, Leo1, EG666190, LOC100042070, Tmod3, Tmod2, Lysmd2, Scg3, LOC100042107, Bmp5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-239E16.bB6Ng01-239E16.g
ACCGA049756GA049757
length715979
definitionB6Ng01-239E16.b B6Ng01-239E16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(74,764,158 - 74,764,868)(74,615,757 - 74,616,723)
sequence
gaattctttgtgtatgaattacttagttggggtgtggcaacttgccccac
cactccaggcaccaatacctgctctgctgagccccttgaccagtactgtg
actggcccagtcagactcattctgtgagactcctcatgtcctgcaaaggg
gaagtgctgagttagattctgtgaaagcagtccagccttaaggagaagga
accctggggtaggagaggctgggctgactgggagagttagggcatctgct
ggctggtggtaggggccatcagttttgcagacttgcttgctgcagagcct
ctgggtgacacctggtgacagggcagtgtgggcctcttggaccatcacaa
gtgacattgtctgtgaagctggaaatgtgaatgtggagactttctcttca
gttcttgaagagcccacacatccttaagaaaagttcctatcctcagagtg
ctgtcatactttcctgttgctgtgataaaatatctaaacaagaagcagct
tacgggggaaggggtgtgtttcatctcatagtgccacgttctcctccagc
aatgaggttcttgcccatacatcttcagacttactccctgggcttcatac
cctgattggaagcatctgcatctaagttcttgagtgcctctcgaacgact
gacttacctagcactccttctacagccctcgtgcacagtatcagggagta
gacaccacacccttt
gaattcttgtctccctggtctacagagtgagttccacaacaaccagggct
acaagccctgtcttggagagagagagagagagagagagagagagagagag
agagagagagagaagggaaggagagagagagagagagagagagagagaga
gagaaagaatgagagaaagagagagagaaagaaagaaagagagagagaaa
gagaaagagaaagaggaagagagggagttagaaaccccaaaagaaagaaa
gaaagaaagaacgaaagaaagaaagaaaggaagaaagaagagagggagga
aggaaggaaggagagaaagaaagaaccattgaaagaaagaaagaaagttt
ccttaaagaaggctatgataatcttccaactaatgtgaccctacttagat
atgtcccaggtttggccttttaaataactatgtttaatatgctaaaggct
caatcgtgaggtgtggaaactgggtttgaacacatcaaaaagagagatct
accaggcaactatcaaaatataaataaaaagcggggtgaggctgagagag
gattgcaaatttaaggccagcctgttctacacaagttctaaacctgatga
aatatgtagagaaactcagtctaaagaaggaaaaagagagagaaccgcta
cagcttctgggacgggctgaatcacatagacgctgaggcagcagcctggg
cgggccgcagacagtcggccaccgtcccgagcagacgacaagtgtccgcc
tggctcgggagactgccctcgctctcaggagcaccggacaccatctttgg
tacccgactccctggcatcttagatatttgtctgcacgcgtgagagtctg
caccacagaagctgacggcttctgggaacggcctaatcgacacagtcttg
ctgcgagaggctctgttttgggccattcgtcttcgactagacgaaggtct
aagaacaatatatctagcgctccttccct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_74764158_74764868
seq2: B6Ng01-239E16.b_41_755 (reverse)

seq1  AAAGGGTGTGGTGT-TACTCCCTG-GGCTGTGGCCCAGGGCTGTAG-AGG  47
      |||||||||||||| |||||||||   |||||  | |||||||||| |||
seq2  AAAGGGTGTGGTGTCTACTCCCTGATACTGTGCACGAGGGCTGTAGAAGG  50

seq1  AGTGC-AGGAAAGTCAGTCGTTCAATAAGCACTCATGAACTTATTTCTTT  96
      ||||| ||| ||||||||||||| | | ||||||| |||||||  |    
seq2  AGTGCTAGGTAAGTCAGTCGTTCGAGAGGCACTCAAGAACTTAGATGCAG  100

seq1  GTGCTCTGACTGAGGCTCTGATGTGACTGCTGCAAGTCTGCAAGTGTCTG  146
       ||||   | | ||| | ||| |     |  | ||||||| |  ||| ||
seq2  ATGCTTCCAATCAGGGTATGAAGCCCAGGGAGTAAGTCTGAAGATGTATG  150

seq1  GCCCATGACCTCACTCTTGGGCTATAACCTGGAATTATGAGCTAAAACAC  196
      | | |  |||||| |  |||   | ||| ||| | |||||| | ||||||
seq2  GGCAAGAACCTCATTGCTGGAGGAGAACGTGGCACTATGAGATGAAACAC  200

seq1  ACCCCTTCCCCCCTAAGCTGCTTCTTGTCTAGATATTTTATCACAGCAAC  246
      |||||||||||| ||||||||||||||| |||||||||||||||||||||
seq2  ACCCCTTCCCCCGTAAGCTGCTTCTTGTTTAGATATTTTATCACAGCAAC  250

seq1  AGGAAACTATGACAGCACTCTGAGGATAGGAACTTCTCTTAAGGATGTGT  296
      |||||| |||||||||||||||||||||||||||| ||||||||||||||
seq2  AGGAAAGTATGACAGCACTCTGAGGATAGGAACTTTTCTTAAGGATGTGT  300

seq1  GGGCTCTTCAAGAACTGAAGAGAAAGTCTCCACATTCACACTGCCAGCTT  346
      |||||||||||||||||||||||||||||||||||||||| | |||||||
seq2  GGGCTCTTCAAGAACTGAAGAGAAAGTCTCCACATTCACATTTCCAGCTT  350

seq1  CACAGACAATGTCACTTGTGATGGTCCAAGAGGCCCACACTGCCCTGTCA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGACAATGTCACTTGTGATGGTCCAAGAGGCCCACACTGCCCTGTCA  400

seq1  CCAGGTGTCACCCAGAGGCTCTGCAGCAAGCAAGTCTGCAAAACTGATGG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGTGTCACCCAGAGGCTCTGCAGCAAGCAAGTCTGCAAAACTGATGG  450

seq1  CCCCTACCACCAGCCAGCAGATGCCCTAACTCTCCCAGTCAGCCCAGCCT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTACCACCAGCCAGCAGATGCCCTAACTCTCCCAGTCAGCCCAGCCT  500

seq1  CTCCTACCCCAGGGTTCCTTCTCCTTAAGGCTGGACTGCTTTCACAGAAT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTACCCCAGGGTTCCTTCTCCTTAAGGCTGGACTGCTTTCACAGAAT  550

seq1  CTAACTCAGCACTTCCCCTCTGCAGGACATGAGGAGTCTCACAGAATGAG  596
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  CTAACTCAGCACTTCCCCTTTGCAGGACATGAGGAGTCTCACAGAATGAG  600

seq1  TCTGACTGGGCCAGTCACAGTACTGGTCAAGGGGCTCAGCAGAGCAGGTA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGACTGGGCCAGTCACAGTACTGGTCAAGGGGCTCAGCAGAGCAGGTA  650

seq1  TTGGTGCCTGGAGTGGTGGGGCATGTTGCCACACCCCAACTAAGTAATTC  696
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TTGGTGCCTGGAGTGGTGGGGCAAGTTGCCACACCCCAACTAAGTAATTC  700

seq1  ATACACAAAGAATTC  711
      |||||||||||||||
seq2  ATACACAAAGAATTC  715

seq1: chr9_74615757_74616723
seq2: B6Ng01-239E16.g_76_1042

seq1  CCCTGGTCTACAGAGTGAGTTCCACAACAACCAGGGCTACAAGCCCTGTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGGTCTACAGAGTGAGTTCCACAACAACCAGGGCTACAAGCCCTGTC  50

seq1  TTGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG  100
      |||  |||||||||||||||||||||||||||||||||||||||||||||
seq2  TTG--GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG  98

seq1  AGAAAGGAAGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGAAA  150
      |||| |||||||||||||||||||||||||||||||||||||||||||| 
seq2  AGAAGGGAAGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGAAT  148

seq1  GAGAGAAAGAGAGAGAGAAAGAAAGAAAGAGAGAGAGAAAGAGAGAGAGA  200
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  GAGAGAAAGAGAGAGAGAAAGAAAGAAAGAGAGAGAGAAAGAGAAAGAGA  198

seq1  AAGAGAGAGAGAGAGAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGA  250
      |||||  |||||| |||  |||||     |||||||||||||||||||||
seq2  AAGAGGAAGAGAGGGAGTTAGAAACCCCAAAAGAAAGAAAGAAAGAAAGA  248

seq1  AAGAAAGAAAGAAAGAAAGGAAGAAAGAAGAGAGGGAGGAAGGAAGGAAG  300
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGAAAGAAAGAAAGAAAGGAAGAAAGAAGAGAGGGAGGAAGGAAGGAAG  298

seq1  GAGAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGA  350
      |||||||||||||||  |  |||||||||||||||||        |||||
seq2  GAGAGAAAGAAAGAACCATTGAAAGAAAGAAAGAAAG-TTTCCTTAAAGA  347

seq1  AAGCTATGAGAATACACACAACTAAAATAACCATAGTCAGATATGTCCCA  400
      | ||||||| ||| |   |||||||  | ||| || | ||||||||||||
seq2  AGGCTATGATAAT-CTTCCAACTAATGTGACCCTACTTAGATATGTCCCA  396

seq1  GGTATTGGAAATTTTAAATAACTATGTTTAATATGCTAAAGGCTCAAGCA  450
      ||| ||||   |||||||||||||||||||||||||||||||||||| | 
seq2  GGT-TTGG-CCTTTTAAATAACTATGTTTAATATGCTAAAGGCTCAATCG  444

seq1  TGAAAGGTGGAAAGTGGGTTTGAACACATCAGAAAGAGAGATCTACCAGG  500
      |||   ||||||| ||||||||||||||||| ||||||||||||||||||
seq2  TGAGGTGTGGAAACTGGGTTTGAACACATCAAAAAGAGAGATCTACCAGG  494

seq1  CAACTATCAGAATATAAATAAAAAGCGGGGTGAGGCTGAGATAGGATTGC  550
      ||||||||| ||||||||||||||||||||||||||||||| ||||||||
seq2  CAACTATCAAAATATAAATAAAAAGCGGGGTGAGGCTGAGAGAGGATTGC  544

seq1  AAATTTAAGGCCAGCCTGGTCTACACAAGTTCTAAGCCTGATGAAATATG  600
      |||||||||||||||||| |||||||||||||||| ||||||||||||||
seq2  AAATTTAAGGCCAGCCTGTTCTACACAAGTTCTAAACCTGATGAAATATG  594

seq1  TAGAGAAACTCAGTCTAAAGAAGGAAAAAGAGAGAGAACCG-GACAGCTT  649
      |||||||||||||||||||||||||||||||||||||||||  |||||||
seq2  TAGAGAAACTCAGTCTAAAGAAGGAAAAAGAGAGAGAACCGCTACAGCTT  644

seq1  CTGGGACGGGCAGAAGCACAGAGCCGCTGAGGCAGCAGCCTGGGCGGGCC  699
      ||||||||||| ||| |||| || ||||||||||||||||||||||||||
seq2  CTGGGACGGGCTGAATCACATAGACGCTGAGGCAGCAGCCTGGGCGGGCC  694

seq1  GCAGACAGCCGGCCACCGTCCGGACCAGAGGACAGGTGTCCGCCTGGCTC  749
      |||||||| |||||||||||| || |||| |||| |||||||||||||||
seq2  GCAGACAGTCGGCCACCGTCCCGAGCAGACGACAAGTGTCCGCCTGGCTC  744

seq1  GGGAGAC-GGCCTCAGCCTCAGGAGCAGCGGTCACCATCTTGGTTCCAGG  798
      ||||||| | ||||   |||||||||| ||| ||||||||| | | |  |
seq2  GGGAGACTGCCCTCGCTCTCAGGAGCACCGGACACCATCTTTGGTACCCG  794

seq1  ACTCCCTGG-AACTTAGGATTTTAGTCTGCACAGGTGAGAGTCTGCACCA  847
      ||||||||| | |||| ||| || ||||||||  ||||||||||||||||
seq2  ACTCCCTGGCATCTTA-GATATTTGTCTGCACGCGTGAGAGTCTGCACCA  843

seq1  CAGAAGCTGACAGCTTCTGGGAACTGCCAAAGCAACACAG-CTT-CTGAG  895
      ||||||||||| |||||||||||| ||| || | |||||| ||| ||| |
seq2  CAGAAGCTGACGGCTTCTGGGAACGGCCTAATCGACACAGTCTTGCTGCG  893

seq1  AGAGGCCCTGTTTTGGGCC-TTCTTCTTCGACCAGGAGGAGGTCCAAAAA  944
      |||||| |||||||||||| ||| |||||||| ||  | ||||| || ||
seq2  AGAGGCTCTGTTTTGGGCCATTCGTCTTCGACTAGACGAAGGTCTAAGAA  943

seq1  CAAGATATCT-GCGCACCTTCCCT  967
      ||| |||||| |||| ||||||||
seq2  CAATATATCTAGCGCTCCTTCCCT  967