BAC Information

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BAC

Clone NameB6Ng01-239F17
Chromosome9 (Build37)
Map Location 99,408,589 - 99,529,834
singlet/doubletdoublet
Overlap geneArmc8, Dbr1, A4gnt
Upstream geneRbp2, 4930579K19Rik, Copb2, Mrps22, EG623166, EG623186, 2410012M07Rik, LOC546155, LOC100040370, 7420426K07Rik, LOC100040380, LOC667347, Foxl2os, Foxl2, Faim, Gm1123, Pik3cb, LOC100040442, LOC100040757, EG623459, Cep70, D9Ertd280e, Mras, LOC623534
Downstream geneDzip1l, Cldn18, EG667429, Sox14, LOC667456, 4930519F24Rik, LOC100040590, Il20rb, Nck1, LOC633385, Tmem22, LOC667486
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-239F17.bB6Ng01-239F17.g
ACCGA049804GA049805
length1,180949
definitionB6Ng01-239F17.b B6Ng01-239F17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(99,408,589 - 99,409,771)(99,529,051 - 99,529,834)
sequence
gaattcatcagaggctatgtgtgtgtaggagaatgagacacagaattact
ttctaacaaaacactagtggctctcacttcaggtgcttaggaagctagca
tgggcaagacctgaaagagactaatggaccatgtttactggccacactta
gtcaaagaagtaaccctgcgaagtgacgggctagtataacagtcatgtaa
cacctaataaagacgatctcaatatagtaccaggtcatcagtacctgagc
tgggaaggggcttgccaccaagcttgacaacctgagtctgattcctagaa
cccacattgggaagaactgacttccaaaagttatcctctaacctccacac
atgcaccacagcacctacgtacacatacaacagttgtgtaaatattcctc
acaaacagacatatgtaaaaataaagaaatgtttgaaaccgcttagccta
tgaaagttctaattctacagaagtgatgggctagagaattctgaaagctt
cctatggctccacatcaaggctatgacctccttcccaatgctattacggc
cagcaatcaaacagcccccagggagaggaaataaggcgttgaccaaaata
aaatagtggatagtcaaacctgtgggagagggtgtaatacagtatcatgc
agtggtctgctatagaatcgtaggcaatccattttgcctctcggagactt
cagcaaaatgaaaccattccaagttatcaatgggaaacagcaactggcct
ctctggacaagaccatcatgctgttcagaagcaatatagaaagcaaggta
agcaggagaaaaaacaggggctgacttagaccgagagatatacacaccaa
accagggaaggtaattattaatccagtttccacctgcattcctggcctca
tttattcagcaaatatgggtgtctagtagtgaacatgggtttacaacgca
agaaaacagtagtgatgggagagattccttccttcatcaaacttgtgctg
aaacaactaccatttaactggtggtgctatgaacacttgtatctaacaga
atgcaaagcatctaaagaaatgacagattatggggataaaggggacagaa
atgagagaaaacatgaattaaagcaggtagcacatagccattcctgagat
gacttgctatgaatggggaatgaccaccaa
ttaaggaaatccagcatccaagttcccaggccttgatgagcggcaggaca
gactctgtcaccatcccttcacttcacatggcaggatgcagcgactgttg
gcaagcccgcaaaattaaaggaatttgacctgagccacattaggagaccc
ataggtgtgctccaatttgatcagatggcaatcacctttcagatccctta
tccattaacgttgcccagaaagctccggcaggagttgggggtattatatt
ttctctcctgattatagatccctgccccctctcgttgggactctcatctc
gtgactttaagttctgggagggtttgttgtatcttagggcctttctctca
acacagcttcaaaatgccaagctctgcatcttggggacagcaaggacaaa
agccctaggaataaacgttgccaagggtggggagaaactcaaatttctgt
gcgttattgatgggaattcaaaatggtactgccactgtgggaaacaaaat
ggtttgccatgattcagcactatttgaaaatattacaaggattaggaggt
atagccttgttggagaaagtgtgacactggaggtgggctttgaggtttca
aaacgcccatgtcagacccagtcttcgcccacccttacgggtcaggtggg
tcaggatgtaactcttaactatttctccaacaccaggcctgcctgctacc
atactccctgcaattatgataaatggactaagcctctgatactgtaagca
agcctccagttaagtacttttctttttcataagagttaccttggtcatgg
ggtctcttctcagcaacagaataataaataaggcacatgtctagatctat
atccaaagaagcttaaagcaagaccccaaacaaactcttggacacttgta
tttaatgagctgtcaaaatggctcagcaggtaaagggctttgtcatcaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_99408589_99409771
seq2: B6Ng01-239F17.b_44_1223

seq1  GAATTCATCAGAGGCTATGTGTGTGTAGGAGAATGAGACACAGAATTACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCAGAGGCTATGTGTGTGTAGGAGAATGAGACACAGAATTACT  50

seq1  TTCTAACAAAACACTAGTGGCTCTCACTTCAGGTGCTTAGGAAGCTAGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAACAAAACACTAGTGGCTCTCACTTCAGGTGCTTAGGAAGCTAGCA  100

seq1  TGGGCAAGACCTGAAAGAGACTAATGGACCATGTTTACTGGCCACACTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCAAGACCTGAAAGAGACTAATGGACCATGTTTACTGGCCACACTTA  150

seq1  GTCAAAGAAGTAACCCTGCGAAGTGACGGGCTAGTATAACAGTCATGTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAAGAAGTAACCCTGCGAAGTGACGGGCTAGTATAACAGTCATGTAA  200

seq1  CACCTAATAAAGACGATCTCAATATAGTACCAGGTCATCAGTACCTGAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTAATAAAGACGATCTCAATATAGTACCAGGTCATCAGTACCTGAGC  250

seq1  TGGGAAGGGGCTTGCCACCAAGCTTGACAACCTGAGTCTGATTCCTAGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAAGGGGCTTGCCACCAAGCTTGACAACCTGAGTCTGATTCCTAGAA  300

seq1  CCCACATTGGGAAGAACTGACTTCCAAAAGTTATCCTCTAACCTCCACAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACATTGGGAAGAACTGACTTCCAAAAGTTATCCTCTAACCTCCACAC  350

seq1  ATGCACCACAGCACCTACGTACACATACAACAGTTGTGTAAATATTCCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCACCACAGCACCTACGTACACATACAACAGTTGTGTAAATATTCCTC  400

seq1  ACAAACAGACATATGTAAAAATAAAGAAATGTTTGAAACCGCTTAGCCTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACAGACATATGTAAAAATAAAGAAATGTTTGAAACCGCTTAGCCTA  450

seq1  TGAAAGTTCTAATTCTACAGAAGTGATGGGCTAGAGAATTCTGAAAGCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGTTCTAATTCTACAGAAGTGATGGGCTAGAGAATTCTGAAAGCTT  500

seq1  CCTATGGCTCCACATCAAGGCTATGACCTCCTTCCCAATGCTATTACGGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATGGCTCCACATCAAGGCTATGACCTCCTTCCCAATGCTATTACGGC  550

seq1  CAGCAATCAAACAGCCCCCAGGGAGAGGAAATAAGGCGTTGACCAAAATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAATCAAACAGCCCCCAGGGAGAGGAAATAAGGCGTTGACCAAAATA  600

seq1  AAATAGTGGATAGTCAAACCTGTGGGAGAGGGTGTAATACAGTATCATGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGTGGATAGTCAAACCTGTGGGAGAGGGTGTAATACAGTATCATGC  650

seq1  AGTGGTCTGCTATAGAATCGTAGGCAATCCATTTTGCCTCTCGGAGACTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGTCTGCTATAGAATCGTAGGCAATCCATTTTGCCTCTCGGAGACTT  700

seq1  CAGCAAAATGAAACCATTCCAAGTTATCAATGGGAAACAGCAACTGGCCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAAAATGAAACCATTCCAAGTTATCAATGGGAAACAGCAACTGGCCT  750

seq1  CTCTGGACAAGACCATCATGCTGTTCAGAAGCAATATAGAAAGCAAGGTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGACAAGACCATCATGCTGTTCAGAAGCAATATAGAAAGCAAGGTA  800

seq1  AGCAGGAGAAAAAACAGGGGCTGACTTAGACCGAGAGATATACACACCAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGGAGAAAAAACAGGGGCTGACTTAGACCGAGAGATATACACACCAA  850

seq1  ACCAGGGAAGGTAATTATTAATCCAGTTTCCACCTGCATTCCTGGCCTCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGGGAAGGTAATTATTAATCCAGTTTCCACCTGCATTCCTGGCCTCA  900

seq1  TTTATTCAGCAAATATGGGTGTCTAGTAGTGAACAT-GGTTTACAACGCA  949
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TTTATTCAGCAAATATGGGTGTCTAGTAGTGAACATGGGTTTACAACGCA  950

seq1  AGAAAACAGTAGTGAT-GGAGAGATTCCTTCCTTTCATCAAACTTGGTGC  998
      |||||||||||||||| ||||||||||||||| |||||||||||| ||||
seq2  AGAAAACAGTAGTGATGGGAGAGATTCCTTCC-TTCATCAAACTT-GTGC  998

seq1  TG-AACAACTACCA-TTAACT-GTGGTGCTATG-ACACTTGTATCT-ACA  1043
      || ||||||||||| |||||| ||||||||||| |||||||||||| |||
seq2  TGAAACAACTACCATTTAACTGGTGGTGCTATGAACACTTGTATCTAACA  1048

seq1  G-ATGCAAAAGCATCTAAAAGAATGACAGGATTATGGGGTTAAGGGGGAC  1092
      | |||| ||||||||||||  ||||||| |||||||||| ||| ||||||
seq2  GAATGC-AAAGCATCTAAAGAAATGACA-GATTATGGGGATAAAGGGGAC  1096

seq1  AG-AATGAGAG-AAACATGAATAAAAGGCAGGTAGGAACCATAGCCATTC  1140
      || |||||||| |||||||||| ||| |||||||| |  |||||||||||
seq2  AGAAATGAGAGAAAACATGAATTAAA-GCAGGTAGCA--CATAGCCATTC  1143

seq1  TGAAGAATGAGGGTTTTGCTATGAATTGGGGAATGACCACCAA  1183
         || ||||     |||||||||| |||||||||||||||||
seq2  CTGAG-ATGA----CTTGCTATGAA-TGGGGAATGACCACCAA  1180

seq1: chr9_99529051_99529834
seq2: B6Ng01-239F17.g_72_855 (reverse)

seq1  TCTTATGAAAAAGAAAAGTACTTAACTGGAGGCTTGCTTACAGTATCAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTATGAAAAAGAAAAGTACTTAACTGGAGGCTTGCTTACAGTATCAGA  50

seq1  GGCTTAGTCCATTTATCATAATTGCAGGGAGTATGGTAGCAGGCAGGCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTAGTCCATTTATCATAATTGCAGGGAGTATGGTAGCAGGCAGGCCT  100

seq1  GGTGTTGGAGAAATAGTTAAGAGTTACATCCTGACCCACCTGACCCGTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTTGGAGAAATAGTTAAGAGTTACATCCTGACCCACCTGACCCGTAA  150

seq1  GGGTGGGCGAAGACTGGGTCTGACATGGGCGTTTTGAAACCTCAAAGCCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGGGCGAAGACTGGGTCTGACATGGGCGTTTTGAAACCTCAAAGCCC  200

seq1  ACCTCCAGTGTCACACTTTCTCCAACAAGGCTATACCTCCTAATCCTTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCCAGTGTCACACTTTCTCCAACAAGGCTATACCTCCTAATCCTTGT  250

seq1  AATATTTTCAAATAGTGCTGAATCATGGCAAACCATTTTGTTTCCCACAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTTTCAAATAGTGCTGAATCATGGCAAACCATTTTGTTTCCCACAG  300

seq1  TGGCAGTACCATTTTGAATTCCCATCAATAACGCACAGAAATTTGAGTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAGTACCATTTTGAATTCCCATCAATAACGCACAGAAATTTGAGTTT  350

seq1  CTCCCCACCCTTGGCAACGTTTATTCCTAGGGCTTTTGTCCTTGCTGTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCCACCCTTGGCAACGTTTATTCCTAGGGCTTTTGTCCTTGCTGTCC  400

seq1  CCAAGATGCAGAGCTTGGCATTTTGAAGCTGTGTTGAGAGAAAGGCCCTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGATGCAGAGCTTGGCATTTTGAAGCTGTGTTGAGAGAAAGGCCCTA  450

seq1  AGATACAACAAACCCTCCCAGAACTTAAAGTCACGAGATGAGAGTCCCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATACAACAAACCCTCCCAGAACTTAAAGTCACGAGATGAGAGTCCCAA  500

seq1  CGAGAGGGGGCAGGGATCTATAATCAGGAGAGAAAATATAATACCCCCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGAGGGGGCAGGGATCTATAATCAGGAGAGAAAATATAATACCCCCAA  550

seq1  CTCCTGCCGGAGCTTTCTGGGCAACGTTAATGGATAAGGGATCTGAAAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGCCGGAGCTTTCTGGGCAACGTTAATGGATAAGGGATCTGAAAGG  600

seq1  TGATTGCCATCTGATCAAATTGGAGCACACCTATGGGTCTCCTAATGTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTGCCATCTGATCAAATTGGAGCACACCTATGGGTCTCCTAATGTGG  650

seq1  CTCAGGTCAAATTCCTTTAATTTTGCGGGCTTGCCAACAGTCGCTGCATC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGGTCAAATTCCTTTAATTTTGCGGGCTTGCCAACAGTCGCTGCATC  700

seq1  CTGCCATGTGAAGTGAAGGGATGGTGACAGAGTCTGTCCTGCCGCTCATC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCATGTGAAGTGAAGGGATGGTGACAGAGTCTGTCCTGCCGCTCATC  750

seq1  AAGGCCTGGGAACTTGGATGCTGGATTTCCTTAA  784
      ||||||||||||||||||||||||||||||||||
seq2  AAGGCCTGGGAACTTGGATGCTGGATTTCCTTAA  784