BAC Information

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BAC

Clone NameB6Ng01-239O18
Chromosome9 (Build37)
Map Location 10,238,210 - 10,239,391
singlet/doubletsinglet
Overlap genenone
Upstream gene9030420J04Rik, Cntn5
Downstream geneLOC665154, LOC100039970, LOC665178
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-239O18.bB6Ng01-239O18.g
ACCGA050221GA050222
length1,1931,194
definitionB6Ng01-239O18.b B6Ng01-239O18.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ggaattcaagctaaaaatatagaaagttggaatagtaaaatacttgtgat
atgaaagaacacatagtactggaaagtaaagggttaatcttggatgaggg
cagatagattactgaaaggagtaataagagacaagttaagcacaacaaaa
gactccattagtttgtttactaggcataatttagaaagaatttcaacaca
gaacttggagttctacaattggctagattcactggctcctatgtccaaca
gattctttggtttttgccctcatagagctgggtttataggtgtatacttc
tgtgcttagatttgacatgtgtgccagggaactgaactttgtccttatgt
atgaacacagtagggactttactcactgaactatactctggcctccttaa
gaggatttttttttttgcaagtatagagattcaaatactggcagatgtta
tttgaagaaatgaaacaattagggaaatatttcagcaaataattgagatg
ttaaactgtgtgattatacgtatatatgggagtgaatatatgtgctcaat
tattctgcaaataattgggatattataatgtgtgcaaatatgtatgcaaa
ccacacagttttaacattactataaaactcatcttataaagggagatatg
agtaaaatctcctttggaattattgacaagcacaaaagtccatcatttta
gagtttatagatgctgtaattttcatttaaatacatatttttctgttgaa
aagacaaagttactaagcagaatcatcatacgataccacaccatctttgt
actatagagagacaaatatcatctaactttctcaagagtgcaaagttcag
agggtattttcagttggtcagtttagttgaaaggacacagtaatttgtct
agaccagttcaactataaagtttgatagcccaaaccatcaaattccattg
cctaatagcatttctacaagcacaagcagaatactacagggctacaagat
tgctcacaaaagaatctaaaaaaggatgttaaaacatatatacataatct
tcttcttttcgtgtttgaagaagaagaatttcatcagagattatgttaga
aaaacttacgtatattgacaagtataaatgttcacatcactttaccttat
tgcatgtttttcctcctagaaaacagaatctatgcttcagtta

gaattcagagatctgactgcctctgttaagcacataagataaactagttg
ggtgggacccagtcctgaaattatcattactaccacatccaggcctaacc
atgctctgtcccaggctgatcctgaacacagggatttgtctgagtatttg
gattaagtataaacaaaacaacttagctgggtggaatctcttgtaatcac
tactccccaaatctctttatctccttcctaagtatctttctggcatgttg
actcaatgcatctgccttggttcctttgagttcgtgaagcacctcataat
aattcctagtccactcttattatttgcatagttgagaaactttatatttt
tgaacttgtgttttaagagttctttttcccagccttaaggggccaaggct
ttaccattttgctaaggcagtagctaatcttttgcctgcagactcatgct
gtctctgattgtcatgaacattccttaaagttgtaaaatatgtacattat
tatacaaacaagccttatggctggggcagtaatccacactcttggagacc
tttgtctgctgtccctattccaggggcagaaccctgtctgtaagtcccac
caaggctatgttggatcaccacttgctcagcaggaggagttccagagcag
gctcatcacctcccagggcattcaaagaagggtaagttttaacagtacag
tcagggaagaaagagatggtagaagaaagaatggatatgcatctttcagt
ataaacgtgggaaaaacgtatgcaaggatatttatccctgcacgtgtggt
gcattctgagacaaaaacagagtcaggagggttcgactagaaactggggg
aagccaatttctttatttctatgggtttgttttaaggaaaaagggacttg
agggggaaattttctgatatatatatataatatttaggctatgccattgg
ataatttgaaatacaattataataataatccaaagagttaaaacaaaatc
ccatactagggacatgaactagtatacgttcactgggaggacatgctttg
ttggatgtggtttgggtttttattcatactaattctcttagggctttgga
gccttaattcaatgggctcctaagattcggagatctagtgatttctatca
attgcttgtttgttggatttaaatttgggaacccgagtatcgta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_10238210_10239391
seq2: B6Ng01-239O18.b_45_1237

seq1  GGAATTCAAGCTAAAAATATAGAAAGTTGGAATAGTAAAATACTTGTGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATTCAAGCTAAAAATATAGAAAGTTGGAATAGTAAAATACTTGTGAT  50

seq1  ATGAAAGAACACATAGTACTGGAAAGTAAAGGGTTAATCTTGGATGAGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAAGAACACATAGTACTGGAAAGTAAAGGGTTAATCTTGGATGAGGG  100

seq1  CAGATAGATTACTGAAAGGAGTAATAAGAGACAAGTTAAGCACAACAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATAGATTACTGAAAGGAGTAATAAGAGACAAGTTAAGCACAACAAAA  150

seq1  GACTCCATTAGTTTGTTTACTAGGCATAATTTAGAAAGAATTTCAACACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCCATTAGTTTGTTTACTAGGCATAATTTAGAAAGAATTTCAACACA  200

seq1  GAACTTGGAGTTCTACAATTGGCTAGATTCACTGGCTCCTATGTCCAACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTTGGAGTTCTACAATTGGCTAGATTCACTGGCTCCTATGTCCAACA  250

seq1  GATTCTTTGGTTTTTGCCCTCATAGAGCTGGGTTTATAGGTGTATACTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCTTTGGTTTTTGCCCTCATAGAGCTGGGTTTATAGGTGTATACTTC  300

seq1  TGTGCTTAGATTTGACATGTGTGCCAGGGAACTGAACTTTGTCCTTATGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCTTAGATTTGACATGTGTGCCAGGGAACTGAACTTTGTCCTTATGT  350

seq1  ATGAACACAGTAGGGACTTTACTCACTGAACTATACTCTGGCCTCCTTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAACACAGTAGGGACTTTACTCACTGAACTATACTCTGGCCTCCTTAA  400

seq1  GAGGATTTTTTTTTTTGCAAGTATAGAGATTCAAATACTGGCAGATGTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGATTTTTTTTTTTGCAAGTATAGAGATTCAAATACTGGCAGATGTTA  450

seq1  TTTGAAGAAATGAAACAATTAGGGAAATATTTCAGCAAATAATTGAGATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAAGAAATGAAACAATTAGGGAAATATTTCAGCAAATAATTGAGATG  500

seq1  TTAAACTGTGTGATTATACGTATATATGGGAGTGAATATATGTGCTCAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAACTGTGTGATTATACGTATATATGGGAGTGAATATATGTGCTCAAT  550

seq1  TATTCTGCAAATAATTGGGATATTATAATGTGTGCAAATATGTATGCAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCTGCAAATAATTGGGATATTATAATGTGTGCAAATATGTATGCAAA  600

seq1  CCACACAGTTTTAACATTACTATAAAACTCATCTTATAAAGGGAGATATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACACAGTTTTAACATTACTATAAAACTCATCTTATAAAGGGAGATATG  650

seq1  AGTAAAATCTCCTTTGGAATTATTGACAAGCACAAAAGTCCATCATTTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAAATCTCCTTTGGAATTATTGACAAGCACAAAAGTCCATCATTTTA  700

seq1  GAGTTTATAGATGCTGTAATTTTCATTTAAATACATATTTTTCTGTTGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTTATAGATGCTGTAATTTTCATTTAAATACATATTTTTCTGTTGAA  750

seq1  AAGACAAAGTTACTAAGCAGAATCATCATACGATACCACACCATCTTTGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACAAAGTTACTAAGCAGAATCATCATACGATACCACACCATCTTTGT  800

seq1  ACTATAGAGAGACAAATATCATCTAACTTTCTCAAGAGTGCAAAGTTCAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATAGAGAGACAAATATCATCTAACTTTCTCAAGAGTGCAAAGTTCAG  850

seq1  AGGGTATTTTCAGTTGGTCAG-TTAGTTGAAAGGACACAGTAATTTGTCT  899
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  AGGGTATTTTCAGTTGGTCAGTTTAGTTGAAAGGACACAGTAATTTGTCT  900

seq1  AGACCAGTTCAACTATAAAGTTTGATAGCCCAAACCATCAAATTCCATTG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCAGTTCAACTATAAAGTTTGATAGCCCAAACCATCAAATTCCATTG  950

seq1  CCTAATAGCATTTCTACAAGCACAAGCAG-ATACTACA-GGCTAC-AGAT  996
      ||||||||||||||||||||||||||||| |||||||| |||||| ||||
seq2  CCTAATAGCATTTCTACAAGCACAAGCAGAATACTACAGGGCTACAAGAT  1000

seq1  TGCTCACAAAAGAATCTAAAAA--GATGT--AAACATATATACATAATCT  1042
      ||||||||||||||||||||||  |||||  |||||||||||||||||||
seq2  TGCTCACAAAAGAATCTAAAAAAGGATGTTAAAACATATATACATAATCT  1050

seq1  TCT--CTTTCGTGTTTGAAGA--GAGAATTCCATCAGAGATTATGTTTAG  1088
      |||   |||||||||||||||   |||||| ||||||||||||||||   
seq2  TCTTCTTTTCGTGTTTGAAGAAGAAGAATTTCATCAGAGATTATGTTAGA  1100

seq1  AAAACTACCGTATATTGGACAAGTATAAATGTGCACATTCACTTTTACTT  1138
      ||||||  |||||||| ||||||||||||||| |||| |||||||  |||
seq2  AAAACTTACGTATATT-GACAAGTATAAATGTTCACA-TCACTTTACCTT  1148

seq1  ATTGCATGTTTTGTCTCCTAAGAAACAG-ATCTATGGTTCAGTTA  1182
      ||||||||||||  ||||||  |||||| ||||||| ||||||||
seq2  ATTGCATGTTTTTCCTCCTAGAAAACAGAATCTATGCTTCAGTTA  1193


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