BAC Information

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BAC

Clone NameB6Ng01-240K23
Chromosome9 (Build37)
Map Location 42,021,225 - 42,137,410
singlet/doubletdoublet
Overlap geneSc5d
Upstream geneLOC100042464, EG667566, 6720432D03Rik, Sorl1
Downstream geneTecta, Tbcel, Grik4, Arhgef12, LOC545339, Tmem136, Pou2f3, LOC628726, Oaf, D630033O11Rik, Trim29
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-240K23.bB6Ng01-240K23.g
ACCGA050788GA050789
length1,155863
definitionB6Ng01-240K23.b B6Ng01-240K23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(42,021,225 - 42,022,385)(42,136,552 - 42,137,410)
sequence
gaattcaaggaaaaaattctaacttctattcataaaccagaaacagtttt
agaagtcatactagagagggtttttaaaaaaaaaatcattatgataattc
aaactggctaccaacaaaggattctctattgactttgcagaaatctggtc
acccagccagtacaaaaatgtttccagggatgaagagctcatctgtttgc
caggaagtcagttttgttattggacaacagctggagaacactgggatgag
acccaagaacctgtattgtagtatcaatgatgttctgtcatattatctgt
caagtcaaatcaatgcctaaatgtgtttcagaatccccgattagtgtttt
ccaaagttatttcagcaaagtagtctatagatgagaatatgatcttacac
agaagcaggacattcaggagagaatagagagctgaaaagacattaggctg
agactctgaattcaaggagttctcaaagtggccagctgcccagtgatcag
ggtgagtcctgatcataactggtagctataattgtagcttaccacctcaa
atgatcacctccaaagactaggagagcaagggactttatcagctttaaat
ggtccagacctgaggctatacattctgagcttaatagagagaagcaagaa
gtaacggtgtgagatggatctccaagacctgctctctgtcctccagcctt
cttatgtgcacagtagcaaagcacttcctggtgcaggtggtttgcatact
agagaaatactgatgtagggccagcaagatgaccagcatgaaagacactt
ggcttcgagcctgatgaccaataaagaaagacatgtgggcattgtaggac
tcaagaaatgttgctgattgtatttgctttgacttatataaaccacataa
tttgggggtgacaactgcatctagtttggagtatccacatccagctgtta
ctaagcaactctggaattttgatgggggatttgtctttttcttattttca
gtcactatacaaaatactttgagactgtagtttgctaagaattgagattt
atgatggcttccgatttactaggtatcccagagtgtgctgactgttttct
tgctgctgctgtcaggactacttgcccactctgactgtgactgaagtatc
acatg
gaattccttcctttctaaggttagaaacacagtagaccatccttcaggtt
tgttttgaagttacattggattcgaatacgtggcagtttaaaatatatat
atatatatatatatatatatatattttggtctaagaactctggaaaaact
aaacagaaacccacagcttctttttacctgggcccccaacaacggctgcc
attttacctgtgaaagcacccacatctctctgccactgagctgaggaaga
gaggtacaggcagaggctgcccctgaactgaccctgttgggagaaccaga
aagtcctaacagcttagagcatttgcctgtgcctaggagctaaaagaggg
ctggggacagatgaaggtaggaaatgtgtgcttcagcttggacaccttaa
ggtcactggggacaatattgaatgtggatgaaaacttcgaattaccaata
ggggctaattctcaacactcatccttgctgggacagaaaccaatggtggc
tgtgtattctgtttactcctggctccttgacagcagaggactcagacaag
ctgttgtgtctccttcattcaccccacagaagcctggggcttcccaatca
gatgggacaagcacagtaatgcctcattgagtgtcttatataaagcttga
acaaaaacacccagtgaatattacttagcaatctatctttattcattctc
ataacaatgtggattaggagagtgatacaaggacacgtgacatcatactc
caggcctccagtgcatgcacacaacggtgcacacacatatgtgattttat
gtatgtgacccacaaaatagatacatgcgtgtcatcatacatccggaaca
taaaaatgaattg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_42021225_42022385
seq2: B6Ng01-240K23.b_40_1194

seq1  GAATTCAAGGAAAAAATTCTAACTTCTATTCATAAACCAGAAACAGTTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGGAAAAAATTCTAACTTCTATTCATAAACCAGAAACAGTTTT  50

seq1  AGAAGTCATACTAGAGAGGGTTTTTAAAAAAAAAATCATTATGATAATTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGTCATACTAGAGAGGGTTTTTAAAAAAAAAATCATTATGATAATTC  100

seq1  AAACTGGCTACCAACAAAGGATTCTCTATTGACTTTGCAGAAATCTGGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGGCTACCAACAAAGGATTCTCTATTGACTTTGCAGAAATCTGGTC  150

seq1  ACCCAGCCAGTACAAAAATGTTTCCAGGGATGAAGAGCTCATCTGTTTGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAGCCAGTACAAAAATGTTTCCAGGGATGAAGAGCTCATCTGTTTGC  200

seq1  CAGGAAGTCAGTTTTGTTATTGGACAACAGCTGGAGAACACTGGGATGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAAGTCAGTTTTGTTATTGGACAACAGCTGGAGAACACTGGGATGAG  250

seq1  ACCCAAGAACCTGTATTGTAGTATCAATGATGTTCTGTCATATTATCTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAAGAACCTGTATTGTAGTATCAATGATGTTCTGTCATATTATCTGT  300

seq1  CAAGTCAAATCAATGCCTAAATGTGTTTCAGAATCCCCGATTAGTGTTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTCAAATCAATGCCTAAATGTGTTTCAGAATCCCCGATTAGTGTTTT  350

seq1  CCAAAGTTATTTCAGCAAAGTAGTCTATAGATGAGAATATGATCTTACAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAGTTATTTCAGCAAAGTAGTCTATAGATGAGAATATGATCTTACAC  400

seq1  AGAAGCAGGACATTCAGGAGAGAATAGAGAGCTGAAAAGACATTAGGCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGCAGGACATTCAGGAGAGAATAGAGAGCTGAAAAGACATTAGGCTG  450

seq1  AGACTCTGAATTCAAGGAGTTCTCAAAGTGGCCAGCTGCCCAGTGATCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTCTGAATTCAAGGAGTTCTCAAAGTGGCCAGCTGCCCAGTGATCAG  500

seq1  GGTGAGTCCTGATCATAACTGGTAACTATAATTGTAGCTTACCACCTCAA  550
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  GGTGAGTCCTGATCATAACTGGTAGCTATAATTGTAGCTTACCACCTCAA  550

seq1  ATGATCACCTCCAAAGACTAGGAGAGCAAGGGACTTTATCAGCTTTAAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATCACCTCCAAAGACTAGGAGAGCAAGGGACTTTATCAGCTTTAAAT  600

seq1  GGTCCAGACCTGAGGCTATACATTCTGAGCTTAATAGAGAGAAGCAAGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCAGACCTGAGGCTATACATTCTGAGCTTAATAGAGAGAAGCAAGAA  650

seq1  GTAACGGTGTGAGATGGATCTCCAAGACCTGCTCTCTGTCCTCCAGCCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACGGTGTGAGATGGATCTCCAAGACCTGCTCTCTGTCCTCCAGCCTT  700

seq1  CTTATGTGCACAGTAGCAAAGCACTTCCTGGTGCAGGTGGTTTGCATACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATGTGCACAGTAGCAAAGCACTTCCTGGTGCAGGTGGTTTGCATACT  750

seq1  AGAGAAATACTGATGTAGGGCCAGCAAGATGACCAGCAGGAAAGACACTT  800
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  AGAGAAATACTGATGTAGGGCCAGCAAGATGACCAGCATGAAAGACACTT  800

seq1  GGCTTCAAGCCTGATGACCAATAAAGAAAGACATGTGGGCATTGTAAGGA  850
      |||||| |||||||||||||||||||||||||||||||||||||| ||||
seq2  GGCTTCGAGCCTGATGACCAATAAAGAAAGACATGTGGGCATTGT-AGGA  849

seq1  CTCAAGAAATGTTGCTGATTGTATTTGCTTTGACTTATATAAAACCACAA  900
      |||||||||||||||||||||||||||||||||||||||| ||||||| |
seq2  CTCAAGAAATGTTGCTGATTGTATTTGCTTTGACTTATAT-AAACCAC-A  897

seq1  TAATTTGGGGGTGACAACTGCATCTAGTTTTGGAAGTATCCACATCCAGC  950
      ||||||||||||||||||||||||||||||  | ||||||||||||||||
seq2  TAATTTGGGGGTGACAACTGCATCTAGTTT--GGAGTATCCACATCCAGC  945

seq1  TGTTTACTAAGCAATTCTGGAATTTTGATGGGGGATTTGTC-TTTTCCTA  999
      || ||||||||||| |||||||||||||||||||||||||| ||||| ||
seq2  TG-TTACTAAGCAACTCTGGAATTTTGATGGGGGATTTGTCTTTTTCTTA  994

seq1  TTTTCAGTCACTATAACAAAATAC-TTGAGACTGTAATTTGTAAAGAATT  1048
      |||||||||||||| ||||||||| ||||||||||| ||||  |||||||
seq2  TTTTCAGTCACTAT-ACAAAATACTTTGAGACTGTAGTTTGCTAAGAATT  1043

seq1  GAGATTTATG-TGGC-TCCAATTT-CTAGGAAACCCAAGAGTGTGCTG-C  1094
      |||||||||| |||| ||| |||| ||||| | ||| ||||||||||| |
seq2  GAGATTTATGATGGCTTCCGATTTACTAGGTATCCC-AGAGTGTGCTGAC  1092

seq1  TGTTATCTGCTTGTTGCCTGTCAAGGGCCTACTTGCCACATCATAATGTG  1144
      |||| |||   || || ||||||  || |||||||||   ||  | ||||
seq2  TGTTTTCTTGCTGCTG-CTGTCA--GGACTACTTGCCCACTCTGACTGTG  1139

seq1  ACTGAAAGTATCACATG  1161
      |||| ||||||||||||
seq2  ACTG-AAGTATCACATG  1155

seq1: chr9_42136552_42137410
seq2: B6Ng01-240K23.g_64_926 (reverse)

seq1  CAATTCA-TTTTATGTTCTGTATGTATGATGACACGCATGTATCTA-TGT  48
      ||||||| |||||||||| | ||||||||||||||||||||||||| | |
seq2  CAATTCATTTTTATGTTCCGGATGTATGATGACACGCATGTATCTATTTT  50

seq1  GT-GGTCACATACATATGATCACATATGTGTGTGCACCTTTGTGTGCAGG  97
      || |||||||||||||  |||||||||||||||||||| ||||||||| |
seq2  GTGGGTCACATACATAAAATCACATATGTGTGTGCACCGTTGTGTGCATG  100

seq1  CACTGGAGGCCCGGAGT-TGATGTCACGTGTCCTTGTATCACTCTCCTAA  146
      ||||||||||| ||||| ||||||||||||||||||||||||||||||||
seq2  CACTGGAGGCCTGGAGTATGATGTCACGTGTCCTTGTATCACTCTCCTAA  150

seq1  T-GACATTGTTATGAGAATGAATAAAGATAGATTGCTAAGTAATATTTAC  195
      |  |||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TCCACATTGTTATGAGAATGAATAAAGATAGATTGCTAAGTAATATTCAC  200

seq1  TGGGTGTTTTTGTTCAAGCTTTATCTAAGAAACTCAATGAGGCATTACTG  245
      |||||||||||||||||||||||| ||||| |||||||||||||||||||
seq2  TGGGTGTTTTTGTTCAAGCTTTATATAAGACACTCAATGAGGCATTACTG  250

seq1  TGCTTGACCCATCTGATTGGGAAGCCCCAGGCTTCTCTGGGGTGAATGAA  295
      |||||| ||||||||||||||||||||||||||||| |||||||||||||
seq2  TGCTTGTCCCATCTGATTGGGAAGCCCCAGGCTTCTGTGGGGTGAATGAA  300

seq1  GGAGACACAACAGCTTGTCTGAGTCCTCTGCTCTCAAGGAGCCAGGAGTA  345
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  GGAGACACAACAGCTTGTCTGAGTCCTCTGCTGTCAAGGAGCCAGGAGTA  350

seq1  AACAGAATACACAGCCACCATTGGTTTCTGTCCCAGCAAGGATGAGTGTT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGAATACACAGCCACCATTGGTTTCTGTCCCAGCAAGGATGAGTGTT  400

seq1  GAGAATTAGCCCCTATTGGTAATTTTGAAGTTTTCATCCACATTCAATAT  445
      |||||||||||||||||||||| || ||||||||||||||||||||||||
seq2  GAGAATTAGCCCCTATTGGTAA-TTCGAAGTTTTCATCCACATTCAATAT  449

seq1  TGTCCCCAGTGACCCTAAGGTGTCCAAGCTGAAGCACACATTTCCTACCT  495
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TGTCCCCAGTGACCTTAAGGTGTCCAAGCTGAAGCACACATTTCCTACCT  499

seq1  TCATCTGTCCCCAGCCCTCTTTTAGCTCCTAGGCACATGCAAATGCTCTA  545
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TCATCTGTCCCCAGCCCTCTTTTAGCTCCTAGGCACAGGCAAATGCTCTA  549

seq1  AGCTGCTAGGACTTTCTGGTTCTCCCAACAGGGTCAGTTCAGGGGCAGCC  595
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGTTAGGACTTTCTGGTTCTCCCAACAGGGTCAGTTCAGGGGCAGCC  599

seq1  TCTGCCTCTACCTCACTTCCTCAGCTCAGTGGCAGAGAGATGTGGGTGCT  645
      ||||||| |||||| |||||||||||||||||||||||||||||||||||
seq2  TCTGCCTGTACCTCTCTTCCTCAGCTCAGTGGCAGAGAGATGTGGGTGCT  649

seq1  TTCACAGGTAAAATGGCAGCCGTTGTTGGGGGCCCAGGTAAAAAGAAGCT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACAGGTAAAATGGCAGCCGTTGTTGGGGGCCCAGGTAAAAAGAAGCT  699

seq1  GTGGGTTTCTGTTTAGTTTTTCCAGAGTTCCTAGACCAAAATATATATAT  745
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  GTGGGTTTCTGTTTAGTTTTTCCAGAGTTCTTAGACCAAAATATATATAT  749

seq1  ATATATATATATATATATATATTCTAAACTGCCACCTATTTGAATCCAAT  795
      ||||||||||||||||||||||| ||||||||||| |||| |||||||||
seq2  ATATATATATATATATATATATTTTAAACTGCCACGTATTCGAATCCAAT  799

seq1  GTAACTTCAAAACAAACTTGAAGGATGGTCTACTGTGTTTCTAACCTTAG  845
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  GTAACTTCAAAACAAACCTGAAGGATGGTCTACTGTGTTTCTAACCTTAG  849

seq1  AAAGGAAGGAATTC  859
      ||||||||||||||
seq2  AAAGGAAGGAATTC  863