BAC Information

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BAC

Clone NameB6Ng01-241A13
Chromosome9 (Build37)
Map Location 79,405,216 - 79,406,350
singlet/doubletsinglet
Overlap genenone
Upstream geneSlc17a5, Cd109, LOC384957, EG666456, LOC436085, LOC235509
Downstream geneLOC666479, Col12a1, Cox7a2, Tmem30a, Filip1, LOC100041218, LOC666490, Senp6, LOC100041249, Myo6, Impg1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-241A13.bB6Ng01-241A13.g
ACCGA051051GA051052
length5491,138
definitionB6Ng01-241A13.b B6Ng01-241A13.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
tgagcttctgggctaacatcctcttatcagtgagtgcatatcatatatgt
tcttttgtggttgagttacctcacttaggatgatatcctccagatccacc
cacttgtttaagaatttcatgaattcattgtttttaaaaactgagtagta
ctccattgtgtaaatgtaccacattttctgtatccattcctctgtcgagg
cacatctgggttctttccagcttctgagattgggaaaggatctttaccta
tcctaaatcagataggggactaatatccaatatatataaagaactcaaga
agttggactccagaaaatcaaataaccccattaaaaaatgagactcagag
ctaaacaaagaattctcacctgaggaatactgaatggctgagaagcacct
gaaaaaatgttcaacatccttaatcatcagggaaatgcaaatcaaaacaa
ccctgagattccacctcacaccagtcagaattgctaaggtcaaaaattca
ggtgaccgtagatgctagcaagaatgtgtagaaagaggaacactccatt
gaattccatagatggatgatactggttcttgaaaattaatataaatatgt
ctagacattgattgcttactctccacaccttttaaggttattataaagaa
agatgtaactagttaaatgagaacatagaaaaagatccaacatttctttc
tccctctttgcctttgctcactacttctccgagtgatatttgtaattata
gaatggggaggaaatggaactctgtaaaaaacaactgaatttgtggttct
tttttggaattttaattacaagtccaagaatgttccttcaattgaatttt
gttgtaatttaaaaaagatctacttactaaatcttaaatgaaaattatat
aatatagatagattctcattttataataagctaaggaagaattacaatta
ctgaaagaagagattcctgtataaaggatctttgtggtgaaactggcata
tagtggaagaatctgtttcttagacatcactcagatactctcttccagca
gcagttgggttgtttatttagatgaaaacttcaggcatctttgatatcca
aatctggggcctatgaacagaggaaagtagaattcactcagtaatctcaa
aaccacatttctccatctgttgagttgctggttctgtttgtaaagaagcc
agtgttgtggtgactgagacaaacaacacactcttctctttctactgctg
tcctgtagtgcagtttggcttgaccatcttcactgtgtcatgtgctcatc
tggtccctgatacacgagggaaggtggtgttgtgtcatgtgggtcgtatg
ctgtgggtttggcagagcatatgcatgggttaccaagccgttcaaaccta
cgtgagtaatggaaaccaaactccttttccattttcccacccatacacac
atctgtagcagaaaagactaaacaaaaatgttcttttttttttatcttac
ataaaaaccaaatagaaaggatgagtagaagctatgggtcaaatttactg
taaggtgtcttcaggaaagaggcctcacctcagcaactgagaaacttctt
gtctgggctctacaagccagcaacattcatctatactctcgaaaggatat
tcttcctcagtagcagtggtttctctttgtgacaaaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_79405216_79406350
seq2: B6Ng01-241A13.g_64_1201 (reverse)

seq1  TCTTTGTCAACAAGAGACAC--CTGCTACTTGAGAGAGAATTATCCTTCT  48
      |||||||||  |||||| ||  ||||||| ||||  |||| |||||||  
seq2  TCTTTGTCACAAAGAGAAACCACTGCTAC-TGAGGAAGAA-TATCCTTTC  48

seq1  GAGAGTTTATAGGATGAATGTTGCTGGCTTGTAGAAGCCCCAGACAGAGA  98
      |||||| ||   |||||||||||||||||||||||   ||||||||   |
seq2  GAGAGTATA---GATGAATGTTGCTGGCTTGTAGA--GCCCAGACAAGAA  93

seq1  GTTTCTCAGTTGCTGAGGTGAGGCCTCTTT-CTGAAGACA-CTTACAGTA  146
      |||||||||||||||||||||||||||||| ||||||||| |||||||||
seq2  GTTTCTCAGTTGCTGAGGTGAGGCCTCTTTCCTGAAGACACCTTACAGTA  143

seq1  AATTTGA-CCATAGCCTTCTACTCATCC-TTCTATTT-GTTTTTATGTAA  193
      ||||||| |||||| ||||||||||||| |||||||| ||||||||||||
seq2  AATTTGACCCATAG-CTTCTACTCATCCTTTCTATTTGGTTTTTATGTAA  192

seq1  GAT--AAAAAAAAGAACA-TTTTGTTTAGTCTTTTTCTGCTACAGATGTG  240
      |||  ||||||||||||| |||||||||||| ||||||||||||||||||
seq2  GATAAAAAAAAAAGAACATTTTTGTTTAGTC-TTTTCTGCTACAGATGTG  241

seq1  TGTATGGGTGGG-AAATGGAAAAGGAGTTTGGTTTCCATTACTCACGTAG  289
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  TGTATGGGTGGGAAAATGGAAAAGGAGTTTGGTTTCCATTACTCACGTAG  291

seq1  GTTTGAACGGCTTGGTAACCCATGCATATGCTCTGCCAAACCCACAGCAT  339
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGAACGGCTTGGTAACCCATGCATATGCTCTGCCAAACCCACAGCAT  341

seq1  ACGACCCACATGACACAACACCACCTTCCCTCGTGTATCAGGGACCAGAT  389
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGACCCACATGACACAACACCACCTTCCCTCGTGTATCAGGGACCAGAT  391

seq1  GAGCACATGACACAGTGAAGATGGTCAAGCC-AACTGCACTACAGGACAG  438
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  GAGCACATGACACAGTGAAGATGGTCAAGCCAAACTGCACTACAGGACAG  441

seq1  CAGTAGAAAGAGAAGAGTGTGTTGTTTGTCTCAGTCACCACAACACTGGC  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAGAAAGAGAAGAGTGTGTTGTTTGTCTCAGTCACCACAACACTGGC  491

seq1  TTCTTTACAAACAGAACCAGCAACTCAACAGATGGAGAAATGTGGTTTTG  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTACAAACAGAACCAGCAACTCAACAGATGGAGAAATGTGGTTTTG  541

seq1  AGATTACTGAGTGAATTCTACTTTCCTCTGTTCATAGGCCCCAGATTTGG  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTACTGAGTGAATTCTACTTTCCTCTGTTCATAGGCCCCAGATTTGG  591

seq1  ATATCAAAGATGCCTGAAGTTTTCATCTAAATAAACAACCCAACTGCTGC  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCAAAGATGCCTGAAGTTTTCATCTAAATAAACAACCCAACTGCTGC  641

seq1  TGGAAGAGAGTATCTGAGTGATGTCTAAGAAACAGATTCTTCCACTATAT  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGAGAGTATCTGAGTGATGTCTAAGAAACAGATTCTTCCACTATAT  691

seq1  GCCAGTTTCACCACAAAGATCCTTTATACAGGAATCTCTTCTTTCAGTAA  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGTTTCACCACAAAGATCCTTTATACAGGAATCTCTTCTTTCAGTAA  741

seq1  TTGTAATTCTTCCTTAGCTTATTATAAAATGAGAATCTATCTATATTATA  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAATTCTTCCTTAGCTTATTATAAAATGAGAATCTATCTATATTATA  791

seq1  TAATTTTCATTTAAGATTTAGTAAGTAGATCTTTTTTAAATTACAACAAA  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTTCATTTAAGATTTAGTAAGTAGATCTTTTTTAAATTACAACAAA  841

seq1  ATTCAATTGAAGGAACATTCTTGGACTTGTAATTAAAATTCCAAAAAAGA  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAATTGAAGGAACATTCTTGGACTTGTAATTAAAATTCCAAAAAAGA  891

seq1  ACCACAAATTCAGTTGTTTTTTACAGAGTTCCATTTCCTCCCCATTCTAT  938
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACAAATTCAGTTGTTTTTTACAGAGTTCCATTTCCTCCCCATTCTAT  941

seq1  AATTACAAATATCACTCGGAGAAGTAGTGAGCAAAGGCAAAGAGGGAGAA  988
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTACAAATATCACTCGGAGAAGTAGTGAGCAAAGGCAAAGAGGGAGAA  991

seq1  AGAAATGTTGGATCTTTTTCTATGTTCTCATTTAACTAGTTACATCTTTC  1038
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATGTTGGATCTTTTTCTATGTTCTCATTTAACTAGTTACATCTTTC  1041

seq1  TTTATAATAACCTTAAAAGGTGTGGAGAGTAAGCAATCAATGTCTAGACA  1088
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATAATAACCTTAAAAGGTGTGGAGAGTAAGCAATCAATGTCTAGACA  1091

seq1  TATTTATATTAATTTTCAAGAACCAGTATCATCCATCTATGGAATTC  1135
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTATATTAATTTTCAAGAACCAGTATCATCCATCTATGGAATTC  1138