BAC Information

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BAC

Clone NameB6Ng01-241I18
Chromosome9 (Build37)
Map Location 59,937,584 - 60,072,221
singlet/doubletdoublet
Overlap geneThsd4
Upstream geneEG665330, Adpgk, Bbs4, Arih1, LOC621119, 4930425N13Rik, Hexa, Brunol6, Parp6, Pkm2, 4933407I18Rik, Gramd2, Senp8, Myo9a, EG665385, LOC100040361, Nr2e3, EG665389
Downstream geneLOC100039792, EG384942, Lrrc49, Larp6, LOC100040447, Uaca, ENSMUSG00000052143, A430102L10
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-241I18.bB6Ng01-241I18.g
ACCGA051433GA051434
length1,183979
definitionB6Ng01-241I18.b B6Ng01-241I18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(59,937,584 - 59,938,768)(60,071,621 - 60,072,221)
sequence
gaattccttcagactaaaatctgtgggacatgtgataaagtgcgatttct
accatcaattaggaagactccgaaatcaaacccagctttccggataaccg
atcccagattctggaagtgggaaggacttcgaagcagcctctccaaggtc
aaccacgtcacacctccgacccttactcttgagatggtcagcttcatttc
cagccatgctaataatagccaagggagaatctgaccataacatatcaagg
tcattacggacgcttgagaaatcaagcagcctggtgatgggaggtggcac
aacttcttgtcctgcctgaatgctcaaccacaaagagaaagcatcagcag
tcacagcgaggcaggagctaacacgggagtacgagccacaaagagcacag
gacatatttgtttgctatgtggtactttgttcaccgtaaatgcctcttga
gcttccatcagaatctaaagcatgttttcgtgtgtatttgctgcgtgtgt
gcatgaaaatacaggtttgcacactgcctggctcctggctgctacttaga
agagaaccttggatgttgatctttgcttcccacctcgttggagacaaggt
cttttgtttacagctgcatataccaggctagctggcctgtgagttttggg
ggacgctcctacctctgcctcctacctcaccataggtatgctgggtgatt
ataccacatctagctttgcccagcctctgggggtttgaattcttgtcctc
atgcttgtatatcaagcactttatctatggagtcgtctcctccatcctaa
aggaccttccaagccatcaacagatgtacgactatttttgtaccagtcgt
agtatataaagacaatccctgtatcacagcttacatagcactgaactaac
cagaatgtcagttaacagcacacggacagtgcatgtgtataaaattactg
ggatattggaaattttctggttttgtacctccatatgctttgcaacaaac
aaacagacaaacaaacaaaccactagtacctaaaataaagtttgcatgac
atagctcttctggtctagaaaaaaaaaaaatacatcctgacagtggattc
ttacagttattttttacttaatgatgttattgaatgcttccaagttcaca
gttaagcatttaaggttcgaacatttgggtttg
gaattcaagtcctttctgcattagagagctagctgggagatttacatctt
attttctccctagctgcccctgttggcttcatagttaatgagtccagatg
aaagaggactcattatttcaaatctgggtgacacgcatttcaattcaaga
cctgtgtttgcccagactgtgacccgagtcacccccacagaactgaaacc
tccacagtggttttgtctgctgtctgccctgtgagggaggttcagcccca
ggttgtttgcctgagcttggttcttatttccaaaccttcccagcatcagt
tagagaggagagagacctgaactggcctaggtcaattcatatgagtttta
aagatatcttctttttatgtgtatttgtgttttgcctgcatgtatatctg
tatactatgcgcgtttctgctgtcagctctcctggaactggggcctaaga
acttaagttcagtactctgcaagggcagccagtactcttaaccactgagt
catctcttcaattcccttacatgggtttttaaataagagcaaagagtggg
acaggaagatacctcaatgggtaaagatacttgctgtgcaagcatgaaga
cccaaatgttttttaaaaaaactcaagctataacggcatgcttgtggaga
cagatgaatgcctggggctgcctcgccagccaggccactgatccctgaga
tacaggtaaatatgaaaggccctgtcacaacaaaataagattcagggggc
tggggagatggcttggcctgtaaagtgcctgctccatacgttctgagttc
tgttctttagcactcctgtcaacagccaggcctggtggcacttgcctctc
ctttcagtgctgggaggcagaggcaagaggctccctagagcttgttggca
agctcacttaatccaactggtgagccccaggctccgtgagagactctgtc
tcagaaacctaaagtggaccagcagtata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_59937584_59938768
seq2: B6Ng01-241I18.b_44_1226

seq1  GAATTCCTTCAGACTAAAATCTGTGGGACATGTGATAAAGTGCGATTTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTCAGACTAAAATCTGTGGGACATGTGATAAAGTGCGATTTCT  50

seq1  ACCATCAATTAGGAAGACTCCGAAATCAAACCCAGCTTTCCGGATAACCG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATCAATTAGGAAGACTCCGAAATCAAACCCAGCTTTCCGGATAACCG  100

seq1  ATCCCAGATTCTGGAAGTGGGAAGGACTTCGAAGCAGCCTCTCCAAGGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCAGATTCTGGAAGTGGGAAGGACTTCGAAGCAGCCTCTCCAAGGTC  150

seq1  AACCACGTCACACCTCCGACCCTTACTCTTGAGATGGTCAGCTTCATTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCACGTCACACCTCCGACCCTTACTCTTGAGATGGTCAGCTTCATTTC  200

seq1  CAGCCATGCTAATAATAGCCAAGGGAGAATCTGACCATAACATATCAAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCATGCTAATAATAGCCAAGGGAGAATCTGACCATAACATATCAAGG  250

seq1  TCATTACGGACGCTTGAGAAATCAAGCAGCCTGGTGATGGGAGGTGGCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTACGGACGCTTGAGAAATCAAGCAGCCTGGTGATGGGAGGTGGCAC  300

seq1  AACTTCTTGTCCTGCCTGAATGCTCAACCACAAAGAGAAAGCATCAGCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTCTTGTCCTGCCTGAATGCTCAACCACAAAGAGAAAGCATCAGCAG  350

seq1  TCACAGCGAGGCAGGAGCTAACACGGGAGTACGAGCCACAAAGAGCACAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAGCGAGGCAGGAGCTAACACGGGAGTACGAGCCACAAAGAGCACAG  400

seq1  GACATATTTGTTTGCTATGTGGTACTTTGTTCACCGTAAATGCCTCTTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATATTTGTTTGCTATGTGGTACTTTGTTCACCGTAAATGCCTCTTGA  450

seq1  GCTTCCATCAGAATCTAAAGCATGTTTTCGTGTGTATTTGCTGCGTGTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCCATCAGAATCTAAAGCATGTTTTCGTGTGTATTTGCTGCGTGTGT  500

seq1  GCATGAAAATACAGGTTTGCACACTGCCTGGCTCCTGGCTGCTACTTAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGAAAATACAGGTTTGCACACTGCCTGGCTCCTGGCTGCTACTTAGA  550

seq1  AGAGAACCTTGGATGTTGATCTTTGCTTCCCACCTCGTTGGAGACAAGGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAACCTTGGATGTTGATCTTTGCTTCCCACCTCGTTGGAGACAAGGT  600

seq1  CTTTTGTTTACAGCTGCATATACCAGGCTAGCTGGCCTGTGAGTTTTGGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGTTTACAGCTGCATATACCAGGCTAGCTGGCCTGTGAGTTTTGGG  650

seq1  GGACGCTCCTACCTCTGCCTCCTACCTCACCATAGGTATGCTGGGTGATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACGCTCCTACCTCTGCCTCCTACCTCACCATAGGTATGCTGGGTGATT  700

seq1  ATACCACATCTAGCTTTGCCCAGCCTCTGGGGGTTTGAATTCTTGTCCTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCACATCTAGCTTTGCCCAGCCTCTGGGGGTTTGAATTCTTGTCCTC  750

seq1  ATGCTTGTATATCAAGCACTTTATCTATGGAGTCGTCTCCTCCATCCTAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTTGTATATCAAGCACTTTATCTATGGAGTCGTCTCCTCCATCCTAA  800

seq1  AGGACCTTCCAAGCCATCAACAGATGTACGACTATTTTTGTACCAGTCGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACCTTCCAAGCCATCAACAGATGTACGACTATTTTTGTACCAGTCGT  850

seq1  AGTATATAAAGACAATCCCTGTATCACAGCTTACATAGCACTGAACTAAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATATAAAGACAATCCCTGTATCACAGCTTACATAGCACTGAACTAAC  900

seq1  CAGAATGTCAGTTAACAGCACACGGACAGTGCATGTGTATAAAATTACTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATGTCAGTTAACAGCACACGGACAGTGCATGTGTATAAAATTACTG  950

seq1  GGATATTGG-AATTTTCTGGTTTTGTACCTCCATATGCTTTGCAAACAAA  999
      ||||||||| ||||||||||||||||||||||||||||||||| ||||||
seq2  GGATATTGGAAATTTTCTGGTTTTGTACCTCCATATGCTTTGC-AACAAA  999

seq1  CAAACAGACAAACAAACAAACCACTAAGTACCTAAAATAAAGTTTGCATG  1049
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  CAAACAGACAAACAAACAAACCACT-AGTACCTAAAATAAAGTTTGCATG  1048

seq1  ACATAGCTCTTCTGGTCTA-AGAAAAAAAAAATACATCCTGACAGT-GAT  1097
      ||||||||||||||||||| | |||||||||||||||||||||||| |||
seq2  ACATAGCTCTTCTGGTCTAGAAAAAAAAAAAATACATCCTGACAGTGGAT  1098

seq1  TTCTACAG-TATTTTTTACTT-ATGATGTTTTATTG-ATGCTTCAAATGT  1144
      |  ||||| |||||||||||| ||||||  |||||| ||||||| || ||
seq2  TCTTACAGTTATTTTTTACTTAATGATG--TTATTGAATGCTTCCAA-GT  1145

seq1  TCACAGTTTAGAGCATTAAGGGTTTCGAACATTTGGGTTTG  1185
      ||||||||   |||||| | || ||||||||||||||||||
seq2  TCACAGTT--AAGCATTTAAGG-TTCGAACATTTGGGTTTG  1183

seq1: chr9_60071621_60072221
seq2: B6Ng01-241I18.g_65_665 (reverse)

seq1  GTCTTCATGCTTGCACAGCAAGTATCTTTACCCATTGAGGTATCTTCCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTCATGCTTGCACAGCAAGTATCTTTACCCATTGAGGTATCTTCCTG  50

seq1  TCCCACTCTTTGCTCTTATTTAAAAACCCATGTAAGGGAATTGAAGAGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCACTCTTTGCTCTTATTTAAAAACCCATGTAAGGGAATTGAAGAGAT  100

seq1  GACTCAGTGGTTAAGAGTACTGGCTGCCCTTGCAGAGTACTGAACTTAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCAGTGGTTAAGAGTACTGGCTGCCCTTGCAGAGTACTGAACTTAAG  150

seq1  TTCTTAGGCCCCAGTTCCAGGAGAGCTGACAGCAGAAACGCGCATAGTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTAGGCCCCAGTTCCAGGAGAGCTGACAGCAGAAACGCGCATAGTAT  200

seq1  ACAGATATACATGCAGGCAAAACACAAATACACATAAAAAGAAGATATCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGATATACATGCAGGCAAAACACAAATACACATAAAAAGAAGATATCT  250

seq1  TTAAAACTCATATGAATTGACCTAGGCCAGTTCAGGTCTCTCTCCTCTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAACTCATATGAATTGACCTAGGCCAGTTCAGGTCTCTCTCCTCTCT  300

seq1  AACTGATGCTGGGAAGGTTTGGAAATAAGAACCAAGCTCAGGCAAACAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGATGCTGGGAAGGTTTGGAAATAAGAACCAAGCTCAGGCAAACAAC  350

seq1  CTGGGGCTGAACCTCCCTCACAGGGCAGACAGCAGACAAAACCACTGTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGGCTGAACCTCCCTCACAGGGCAGACAGCAGACAAAACCACTGTGG  400

seq1  AGGTTTCAGTTCTGTGGGGGTGACTCGGGTCACAGTCTGGGCAAACACAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTTCAGTTCTGTGGGGGTGACTCGGGTCACAGTCTGGGCAAACACAG  450

seq1  GTCTTGAATTGAAATGCGTGTCACCCAGATTTGAAATAATGAGTCCTCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTGAATTGAAATGCGTGTCACCCAGATTTGAAATAATGAGTCCTCTT  500

seq1  TCATCTGGACTCATTAACTATGAAGCCAACAGGGGCAGCTAGGGAGAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCTGGACTCATTAACTATGAAGCCAACAGGGGCAGCTAGGGAGAAAA  550

seq1  TAAGATGTAAATCTCCCAGCTAGCTCTCTAATGCAGAAAGGACTTGAATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGATGTAAATCTCCCAGCTAGCTCTCTAATGCAGAAAGGACTTGAATT  600

seq1  C  601
      |
seq2  C  601