BAC Information

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BAC

Clone NameB6Ng01-241K20
Chromosome15 (Build37)9 (Build37)
Map Location 40,402,501 - 40,402,75493,724,723 - 93,725,900
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneRims2, Tm7sf4, Dpys, Lrp12, LOC100039130, LOC670013, LOC664872
Downstream geneZfpm2, Ppia-ps25
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-241K20.bB6Ng01-241K20.g
ACCGA051530GA051531
length3051,162
definitionB6Ng01-241K20.b B6Ng01-241K20.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(40,402,501 - 40,402,754)(93,724,723 - 93,725,900)
sequence
tttgtttagctctgtaccccatttttaaaatagggttatttggttttctg
gagtccatcttcttgagttctttatatatattgtcctggatttcctgtat
gttttgggttaggatctttttgtttttttttggttgttgtgtccatgttc
tctatagaatcttctgcacctgagattctctcttccatctcttgtactct
gttgctgatttctttcctagggtttctatctccagagttgtctccctttt
tgttttcttcattgtttctacttccctttttagatcttggatggttttgt
tcaat

gaattcaaatgaacaattagaagtatcttcagaaagtgcaaagaagaccc
caatgtcttctaagagaacaaaaataagtagaatgactgaggaagtgaat
ataacacatggaaatagagatgaaagtgctgaagcaaacccaaatggaaa
tgatgatggaaatgaaaaagctaaagccaaaaaatcacacatcaatgtgg
attatgtagaaaaatgagattcagggatggaggataaagtatagaaattt
tagtctgtaaaggtcaatgatggatttgtcatcattctgggacatcataa
aaagacctcagtataactaactatcatattttcagaatagaataaggaga
aaatactgacagtcaacacatagagaatattattgttaaaattatagaag
aaaatttcccaaactaaatacctgtacaggaacaaggggtaaacagaact
tcaaatagatagaaccagaaaagggactctcaaatgaaattttataatca
aaacagtaaaagcagagaataaaggaagctgaaggagagaaacatcaagt
tgcttataaaggcaaacccaacagaataatatcttatgatttaacctttt
aaagtgagaagggtctggggagacatattacaagttctaaaaataacagg
gcaaatccagaatattatgaacaacaaaactatcaactgaaattaaaggg
ggataaaaatattatatgataaaagcagattaactaaactcatgatcatc
tagccagctctacagagtatactcaaaggagagttaattttgaagatagt
agacacacataagagatgatagggaaaaatccaaaaaacttcagaacagt
taggcaaaagaaatcaacgaaatcacaaaaaaacaacaccagtaacaaaa
cagaaattatttaatgatatttcagtatcattttcataattttaaagttt
cttattaatttttaaaaaaatcttaaacaattttcttctccacagctctc
tcagatccttcatctctctacccacttaactcaatgtctctccctcaata
taaaaaatcatttctgctcagtgaaattaaacaaacaaccaccaattagg
aactaactacattacaaaattacgacggactaggttcattctggtagtca
gctatttctaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_40402501_40402754
seq2: B6Ng01-241K20.b_132_355 (reverse)

seq1  ATTGAACAAAACCATCCAAGATCTAAAAATGTAATTAGAAACAATAAAGA  50
      ||||||||||||||||||||||||||||| | || |||||||||| ||||
seq2  ATTGAACAAAACCATCCAAGATCTAAAAAGGGAAGTAGAAACAATGAAGA  50

seq1  AAACCCAAAGGGAGACAACTCTGGAGAGAGAAACCCTAGGAAAGACACCA  100
      ||||  ||||||||||||||||||||| |||||||||||||||||     
seq2  AAACAAAAAGGGAGACAACTCTGGAGATAGAAACCCTAGGAAAGA-----  95

seq1  GGAACCATAGATGCGAGCATCAGCAACAGAATACAAGAGATGGAAGAGAG  150
                        |||||||||||| |||||||||||||||||||
seq2  -----------------AATCAGCAACAGAGTACAAGAGATGGAAGAGAG  128

seq1  AATCTCAGGTGCAGAAGAGTCCATAGAAAACATAGACACAACAATCAAAG  200
      |||||||||||||||||| || ||||| ||||| |||||||||| |||  
seq2  AATCTCAGGTGCAGAAGATTCTATAGAGAACATGGACACAACAACCAA--  176

seq1  AAAATGAAAAATGCAAAAAGATCCTAACTCAAAACATTCAGGAAATCCAG  250
            |||||  ||||||||||||||| |||||||| ||||||||||||
seq2  ------AAAAAAACAAAAAGATCCTAACCCAAAACATACAGGAAATCCAG  220

seq1  GACA  254
      ||||
seq2  GACA  224


seq1: chr9_93724723_93725900
seq2: B6Ng01-241K20.g_64_1225 (reverse)

seq1  TCTAGAAATAGCTGACTAACCCAGAAGGAACACTATGTCCTGTCTGTAAA  50
      ||||||||||||||||||  |||||| |||| ||| |||| ||| |||| 
seq2  TCTAGAAATAGCTGACTA--CCAGAATGAAC-CTA-GTCC-GTC-GTAA-  43

seq1  ATTTTTGTTATGTAGTTTTAGGTCTTATTGTTTGTTTGTTTGTTTTAATT  100
        |||||| ||||||  |||| || || |   || ||||||| |||||||
seq2  --TTTTGTAATGTAG--TTAGTTCCTAATTGGTGGTTGTTTG-TTTAATT  88

seq1  TCACTTGAGCAGAAATGA-TTTTTATA-TGAGGGAGAGAACATTGAGTTA  148
      |||| ||||||||||||| |||||||| |||||||||| |||||||||||
seq2  TCAC-TGAGCAGAAATGATTTTTTATATTGAGGGAGAG-ACATTGAGTTA  136

seq1  AGTGGGTAGAGAGATGGAAAGGATCTGAGAGGAGCTGTGGGAGAAGAAAA  198
      ||||||||||||||||  |||||||||||| ||||||| |||||||||||
seq2  AGTGGGTAGAGAGATG--AAGGATCTGAGA-GAGCTGT-GGAGAAGAAAA  182

seq1  TTGTTTAAGATTTTTTTAAAAATTAATAAGAAACTTTAAAATTATGAAAA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTAAGATTTTTTTAAAAATTAATAAGAAACTTTAAAATTATGAAAA  232

seq1  TGATACTGAAATATCATTAAATAATTTCTGTTTTGTTACTGGTGTTGTTT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATACTGAAATATCATTAAATAATTTCTGTTTTGTTACTGGTGTTGTTT  282

seq1  TTTTGTGATTTCGTTGATTTCTTTTGCCTAACTGTTCTGAAGTTTTTTGG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTGATTTCGTTGATTTCTTTTGCCTAACTGTTCTGAAGTTTTTTGG  332

seq1  ATTTTTCCCTATCATCTCTTATGTGTGTCTACTATCTTCAAAATTAACTC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTCCCTATCATCTCTTATGTGTGTCTACTATCTTCAAAATTAACTC  382

seq1  TCCTTTGAGTATACTCTGTAGAGCTGGCTAGATGATCATGAGTTTAGTTA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTGAGTATACTCTGTAGAGCTGGCTAGATGATCATGAGTTTAGTTA  432

seq1  ATCTGCTTTTATCATATAATATTTTTATCCCCCTTTAATTTCAGTTGATA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGCTTTTATCATATAATATTTTTATCCCCCTTTAATTTCAGTTGATA  482

seq1  GTTTTGTTGTTCATAATATTCTGGATTTGCCCTGTTATTTTTAGAACTTG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGTTGTTCATAATATTCTGGATTTGCCCTGTTATTTTTAGAACTTG  532

seq1  TAATATGTCTCCCCAGACCCTTCTCACTTTAAAAGGTTAAATCATAAGAT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATGTCTCCCCAGACCCTTCTCACTTTAAAAGGTTAAATCATAAGAT  582

seq1  ATTATTCTGTTGGGTTTGCCTTTATAAGCAACTTGATGTTTCTCTCCTTC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTCTGTTGGGTTTGCCTTTATAAGCAACTTGATGTTTCTCTCCTTC  632

seq1  AGCTTCCTTTATTCTCTGCTTTTACTGTTTTGATTATAAAATTTCATTTG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTCCTTTATTCTCTGCTTTTACTGTTTTGATTATAAAATTTCATTTG  682

seq1  AGAGTCCCTTTTCTGGTTCTATCTATTTGAAGTTCTGTTTACCCCTTGTT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTCCCTTTTCTGGTTCTATCTATTTGAAGTTCTGTTTACCCCTTGTT  732

seq1  CCTGTACAGGTATTTAGTTTGGGAAATTTTCTTCTATAATTTTAACAATA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTACAGGTATTTAGTTTGGGAAATTTTCTTCTATAATTTTAACAATA  782

seq1  ATATTCTCTATGTGTTGACTGTCAGTATTTTCTCCTTATTCTATTCTGAA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTCTCTATGTGTTGACTGTCAGTATTTTCTCCTTATTCTATTCTGAA  832

seq1  AATATGATAGTTAGTTATACTGAGGTCTTTTTATGATGTCCCAGAATGAT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATGATAGTTAGTTATACTGAGGTCTTTTTATGATGTCCCAGAATGAT  882

seq1  GACAAATCCATCATTGACCTTTACAGACTAAAATTTCTATACTTTATCCT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAATCCATCATTGACCTTTACAGACTAAAATTTCTATACTTTATCCT  932

seq1  CCATCCCTGAATCTCATTTTTCTACATAATCCACATTGATGTGTGATTTT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCCCTGAATCTCATTTTTCTACATAATCCACATTGATGTGTGATTTT  982

seq1  TTGGCTTTAGCTTTTTCATTTCCATCATCATTTCCATTTGGGTTTGCTTC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCTTTAGCTTTTTCATTTCCATCATCATTTCCATTTGGGTTTGCTTC  1032

seq1  AGCACTTTCATCTCTATTTCCATGTGTTATATTCACTTCCTCAGTCATTC  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACTTTCATCTCTATTTCCATGTGTTATATTCACTTCCTCAGTCATTC  1082

seq1  TACTTATTTTTGTTCTCTTAGAAGACATTGGGGTCTTCTTTGCACTTTCT  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTATTTTTGTTCTCTTAGAAGACATTGGGGTCTTCTTTGCACTTTCT  1132

seq1  GAAGATACTTCTAATTGTTCATTTGAATTC  1178
      ||||||||||||||||||||||||||||||
seq2  GAAGATACTTCTAATTGTTCATTTGAATTC  1162


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