BAC Information

Click to search

BAC

Clone NameB6Ng01-241O01
Chromosome9 (Build37)
Map Location 108,181,746 - 108,355,709
singlet/doubletdoublet
Overlap geneNicn1, EG434437, Tcta, Rhoa, Gpx1, Usp4, LOC623859, 1700102P08Rik, Ccdc36, BC048562, Klhdc8b
Upstream geneMapkapk3, Cish, Hemk1, 6430571L13Rik, Cacna2d2, Tmem115, Cyb561d2, Tusc4, Zmynd10, Rassf1, Tusc2, Hyal2, Hyal1, Nat6, Hyal3, Ifrd2, BY080835, Sema3b, Gnai2, Slc38a3, Gnat1, Sema3f, Rbm5, Rbm6, Mon1a, Mst1r, 4921517D21Rik, Camkv, Traip, Ube1l, D330022A01Rik, 6230427J02Rik, 1700021K14Rik, Ihpk1, Gmppb, Rnf123, Amigo3, Mst1, Apeh, Bsn, LOC100042108, Dag1
Downstream geneLOC100042228, Ccdc71, Lamb2, Usp19, Qars, Qrich1, Impdh2, 4733401H18Rik, Dalrd3, Wdr6, 4933406E20Rik, Arih2, ENSMUSG00000074075, Slc25a20, Prkar2a, Ihpk2, Nckipsd, Celsr3, Slc26a6, LOC100038959, Tmem89, Uqcrc1, Col7a1, Pfkfb4, Scotin, Trex1, 6620401K05Rik, Ccdc72, Ccdc51, EG665413, Plxnb1, E330009P21Rik, Fbxw13, Fbxw12, Fbxw14, LOC668758, EG382156, Fbxw16
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-241O01.bB6Ng01-241O01.g
ACCGA051681GA051682
length1,009329
definitionB6Ng01-241O01.b B6Ng01-241O01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(108,354,696 - 108,355,709)(108,181,746 - 108,182,074)
sequence
gaattccaaacataacacaatcacagaaactatgtgcagctggcaaaacc
ctgcttttgctagaacacaggcaaatcgtagtcagctgctgggaagcagc
cccgtatctccacacctggcattaaaacaaaaacatattcctatacgatt
tctctgatgttaaaagaaatcaaaatttcagaattctcactccaggggag
tctttgtcacaccagtttgctatcacatgaccacggagttggctagagat
gagctctgtaccctgaagatgaacagtcacccaacctctgagtagtagcc
ccagagtagcattaggcagagagactcctggcatctggctgattgtgcac
atccactgctcggatcgaagcaaaaataacctacttttctataaagaagg
tctagataggccccaaggctagtacagtctgcccctccaccctacaagct
gctagtctccatatacactaagggatcttttctgtgtcctgctttgtgtc
atggttaggacagctcggctgggctccccaaccagaggcccaggctacag
ccctagtggcctctagggggcgccgctgggaagcttgtggtttggcacct
ccaagctcagttgtgatgggcggactccgacccctaaaggccccaggttc
cactggctagcccctggctgattgtacccagagtggatccgactcacaac
gacacccgcctccgatcccaccataccggtgttgtgttgctcgccgctgc
ctcatttctatcatcgccccaggtagagccctaaatcctggccggccgga
tgtccatatgcctgtctgttcattttgggtgaccgtgggtcggtgcgccc
tactcctgccgtggcatgtgcagagttaaggcgggaggaggtttcccgaa
tctggggagggggagcgaggggctgactctgtccagcccgccccacgccg
agcggtgcgggaagccctacgaatcccagcttcgccctagccgcagccag
cggaagcgg
actctgtagaccaggctggcctcgaactcagaaatccacctgcatctgcc
tcccaagtgctaggattaaagacgtgcaccaccacgcccagctgaaataa
atctttaaaaacaacaacaaaaactaattttgacggaaagcccagagatc
caggcatggtagcacataactttaattccagaactctgcagactgtaaca
agggatctctgtgactttgaggccagtctggactacataacaagttgcag
gacgccaggcagtgctggcctactcctttaatcccagcacttgggaggta
gatgcaggtggatttctgagttggaggcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_108354696_108355709
seq2: B6Ng01-241O01.b_44_1052 (reverse)

seq1  CCGCCTCCGCTGGCTCCGGCTAGGGCTGAAGCTGGGCTCTGGTGGGGC-T  49
      |||| |||||||||| |||||||||| ||||||||| | | || |||| |
seq2  CCGCTTCCGCTGGCTGCGGCTAGGGC-GAAGCTGGGAT-TCGTAGGGCTT  48

seq1  CCCGCACCGCTCCGGCGTGGGGCGGGGCTGGACCGGGTCCGCCCCTCGCT  99
      ||||||||||| ||||||||||| ||||||||| | ||| ||||||||||
seq2  CCCGCACCGCT-CGGCGTGGGGC-GGGCTGGACAGAGTCAGCCCCTCGCT  96

seq1  CCCCCCTCCCCAGATTCGGGGAAACCTCCTCCCGCCTTAACTCTGCACAT  149
       |||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  -CCCCCTCCCCAGATTC-GGGAAACCTCCTCCCGCCTTAACTCTGCACAT  144

seq1  GCCACGGCAGGAGTAGGGCGCACCGACCCACGGTCACCCAAAATGAACAG  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACGGCAGGAGTAGGGCGCACCGACCCACGGTCACCCAAAATGAACAG  194

seq1  ACAGGCATATGGACATCCGGCCGGCCAGGATTTAGGGCTCTACCTGGGGC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGCATATGGACATCCGGCCGGCCAGGATTTAGGGCTCTACCTGGGGC  244

seq1  GATGATAGAAATGAGGCAGCGGCGAGCAACACAACACCGGTATGGTGGGA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGATAGAAATGAGGCAGCGGCGAGCAACACAACACCGGTATGGTGGGA  294

seq1  TCGGAGGCGGGTGTCGTTGTGAGTCGGATCCACTCTGGGTACAATCAGCC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGAGGCGGGTGTCGTTGTGAGTCGGATCCACTCTGGGTACAATCAGCC  344

seq1  AGGGGCTAGCCAGTGGAACCTGGGGCCTTTAGGGGTCGGAGTCCGCCCAT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGCTAGCCAGTGGAACCTGGGGCCTTTAGGGGTCGGAGTCCGCCCAT  394

seq1  CACAACTGAGCTTGGAGGTGCCAAACCACAAGCTTCCCAGCGGCGCCCCC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAACTGAGCTTGGAGGTGCCAAACCACAAGCTTCCCAGCGGCGCCCCC  444

seq1  TAGAGGCCACTAGGGCTGTAGCCTGGGCCTCTGGTTGGGGAGCCCAGCCG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGGCCACTAGGGCTGTAGCCTGGGCCTCTGGTTGGGGAGCCCAGCCG  494

seq1  AGCTGTCCTAACCATGACACAAAGCAGGACACAGAAAAGATCCCTTAGTG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGTCCTAACCATGACACAAAGCAGGACACAGAAAAGATCCCTTAGTG  544

seq1  TATATGGAGACTAGCAGCTTGTAGGGTGGAGGGGCAGACTGTACTAGCCT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATGGAGACTAGCAGCTTGTAGGGTGGAGGGGCAGACTGTACTAGCCT  594

seq1  TGGGGCCTATCTAGACCTTCTTTATAGAAAAGTAGGTTATTTTTGCTTCG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGCCTATCTAGACCTTCTTTATAGAAAAGTAGGTTATTTTTGCTTCG  644

seq1  ATCCGAGCAGTGGATGTGCACAATCAGCCAGATGCCAGGAGTCTCTCTGC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCGAGCAGTGGATGTGCACAATCAGCCAGATGCCAGGAGTCTCTCTGC  694

seq1  CTAATGCTACTCTGGGGCTACTACTCAGAGGTTGGGTGACTGTTCATCTT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATGCTACTCTGGGGCTACTACTCAGAGGTTGGGTGACTGTTCATCTT  744

seq1  CAGGGTACAGAGCTCATCTCTAGCCAACTCCGTGGTCATGTGATAGCAAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGTACAGAGCTCATCTCTAGCCAACTCCGTGGTCATGTGATAGCAAA  794

seq1  CTGGTGTGACAAAGACTCCCCTGGAGTGAGAATTCTGAAATTTTGATTTC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTGTGACAAAGACTCCCCTGGAGTGAGAATTCTGAAATTTTGATTTC  844

seq1  TTTTAACATCAGAGAAATCGTATAGGAATATGTTTTTGTTTTAATGCCAG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAACATCAGAGAAATCGTATAGGAATATGTTTTTGTTTTAATGCCAG  894

seq1  GTGTGGAGATACGGGGCTGCTTCCCAGCAGCTGACTACGATTTGCCTGTG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGGAGATACGGGGCTGCTTCCCAGCAGCTGACTACGATTTGCCTGTG  944

seq1  TTCTAGCAAAAGCAGGGTTTTGCCAGCTGCACATAGTTTCTGTGATTGTG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAGCAAAAGCAGGGTTTTGCCAGCTGCACATAGTTTCTGTGATTGTG  994

seq1  TTATGTTTGGAATTC  1014
      |||||||||||||||
seq2  TTATGTTTGGAATTC  1009

seq1: chr9_108181746_108182074
seq2: B6Ng01-241O01.g_75_403

seq1  ACTCTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCACCTGCATCTGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCACCTGCATCTGCC  50

seq1  TCCCAAGTGCTAGGATTAAAGACGTGCACCACCACGCCCAGCTGAAATAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAAGTGCTAGGATTAAAGACGTGCACCACCACGCCCAGCTGAAATAA  100

seq1  ATCTTTAAAAACAACAACAAAAACTAATTTTGACGGAAAGCCCAGAGATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTAAAAACAACAACAAAAACTAATTTTGACGGAAAGCCCAGAGATC  150

seq1  CAGGCATGGTAGCACATAACTTTAATTCCAGAACTCTGCAGACTGTAACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCATGGTAGCACATAACTTTAATTCCAGAACTCTGCAGACTGTAACA  200

seq1  AGGGATCTCTGTGACTTTGAGGCCAGTCTGGACTACATAACAAGTTGCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGATCTCTGTGACTTTGAGGCCAGTCTGGACTACATAACAAGTTGCAG  250

seq1  GACGCCAGGCAGTGCTGGCCCACGCCTTTAATCCCAGCACTTGGGAGGCA  300
      |||||||||||||||||||| || |||||||||||||||||||||||| |
seq2  GACGCCAGGCAGTGCTGGCCTACTCCTTTAATCCCAGCACTTGGGAGGTA  300

seq1  GAGGCAGGTGGATTTCTGAGTTGGAGGCC  329
      || ||||||||||||||||||||||||||
seq2  GATGCAGGTGGATTTCTGAGTTGGAGGCC  329