BAC Information

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BAC

Clone NameB6Ng01-242D19
Chromosome9 (Build37)
Map Location 50,505,608 - 50,506,715
singlet/doubletsinglet
Overlap geneDixdc1
Upstream geneNcam1, EG667975, LOC100042806, LOC100043346, LOC672372, 1600029D21Rik, Pts, Bcdo2, Tex12, Il18, Sdhd, Timm8b, AU019823, Pih1d2, Dlat
Downstream gene2310030G06Rik, Hspb2, Cryab, 1110032A03Rik, D630004A14Rik, Alg9, Ppp2r1b, Snf1lk2, Layn, 4833427G06Rik, Btg4, LOC100042825, Pou2af1, Gm684, 1810046K07Rik, LOC100042854, LOC640374, LOC668070
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-242D19.bB6Ng01-242D19.g
ACCGA051936GA051937
length1,1841,113
definitionB6Ng01-242D19.b B6Ng01-242D19.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaagaactagatgagaaagtcagcagagaaacagagagaagaggg
accacaatacataaaagggaaaaatccaaaggaaagcagctctgtcgact
gagtttgaggcctgtagtgagaaattttgtttcttcaaaaacccagttac
gtttctgttttaatcccaggtgtggggtacagggctgcttcaggttgtcc
acagcagctgactatgattgtctcgtgctttaggaggggcgtgattgtgc
cagctgcagagagcttatgtttggaattctggggactcctgagagggtat
gagagagagagccaggagagggtcttgcagaggctgctgccccgctgctg
ctggtccctgctattgctggtccctgctgttgtgttttctgcttttgcta
ttgctggttttctggattgctagatgtatctcctgatgatgagactggac
ttgcccctagtaacttgacacctctagtcagcaggaagtagtctaaagag
atctatgccccctttcccctctaacattcattttctctctcgcttaccta
atgttggggggttagaagggttcccggtggaaacagtagtagatataaga
acccaacaaattattctgaaaagtccagttacataggccagcctggtcta
ctgaacaagttccaggacatctactgctgaaagaaaaaaaaaaaaaaacc
ctccaataaaggttgaaaggtatctgggtattgggtgtaagccatcatta
gagtcagtttaacactatgctcacacagacaataatagcagtaggctctc
ccctaggtcccatgaccagccccaggtataagctctgtctggtgaatggg
ctgtgaatcaatagaaagtggttggttaccactataacatctgtgccata
ttgggcccctggggcctatcttaccaggccactcactatgggagtcctca
gctttcacatctggataagaatactgactgctccaccagcagcatgcaca
gcacgataaagggaatgtttaattctaaatcaattggaacaaagcacact
acaggaatggtgaagatacagccaaggtccattctagagattgacgctac
gggcacttaattagaaccaaacgaggaatccgattaatgctcatcactgt
aatggtttcgaaaggtatagggccacaattctca
gaattcacagccaaaaagctgtaaaggggctgtgtccttgataaagagag
atttatgagtgcctaggccccagcatttaccacttacaaaactgggaatc
caggcgcacaaagcctttgtcagctgctcctcttcctcagctgacaaggt
gctaggctaacaagccccactgcctgcacctggctggaccgcaggaggga
tatgcgagacaaaccggagggagggcgtagtggggatctaggatgctgag
aaacggttttcctaaaagcacagacgcatgctcagttccacctctcctct
ccaagagcgttgcctcccatataagggcagaaggaggcgggcgtctggat
acccaaccccaccgggggagtggcggagcagccaaaggaaaacaacattt
ctttttcttgaaatgagactgccagggtaaggccacggaggtaagactag
gaaactagatggccaagatcaaggacctcggagggaggaaaaccctgagg
tgtgtgtcagagcagaagcaccatcctagaaaaggaaggagcttttaatc
ttctgcctcaggtctggggaaggaatcttcatgctaattaattgtaagac
ctggactcctccctaactcgtttaaaagtcctacttgacaaacaagtaat
ttctatttaccatcataatcctccctgagaactataatatatactatata
tacatttcttgatctactatctcaccaatattaatttgttaaaccagcaa
accccaacaaagatattgctaaattagacttacataaattttttaaatgg
gtaatagacgaaatcaaagggtccagtcgcccctctaagtgcttccatta
gcagacacacagactgaatctgtgtgtggagtcggctcaaattcctaaaa
tcactctattttgtagcgctaatcccacaccagcagcctgttctcacaaa
aatagcgcccccaatcatctcttgtcggggaccaaccacgaccctctgtc
ctggcccagctttccccctcattttccccacttcagagcaaagtggcttc
agctcaccatttgacttgtgtccctccaatggttcccctcttggctctgg
ccttcagccaagc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_50505608_50506715
seq2: B6Ng01-242D19.g_66_1178

seq1  GAATTCACAGCCAAAAAGCTGTAAAGGGGCTGTGTCCTTGATAAAGAGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAGCCAAAAAGCTGTAAAGGGGCTGTGTCCTTGATAAAGAGAG  50

seq1  ATTTATGAGTGCCTAGGCCCCAGCATTTACCACTTACAAAACTGGGAATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATGAGTGCCTAGGCCCCAGCATTTACCACTTACAAAACTGGGAATC  100

seq1  CAGGCGCACAAAGCCTTTGTCAGCTGCTCCTCTTCCTCAGCTGACAAGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCGCACAAAGCCTTTGTCAGCTGCTCCTCTTCCTCAGCTGACAAGGT  150

seq1  GCTAGGCTAACAAGCCCCACTGCCTGCACCTGGCTGGACCGCAGGAGGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGGCTAACAAGCCCCACTGCCTGCACCTGGCTGGACCGCAGGAGGGA  200

seq1  TATGCGAGACAAACCGGAGGGAGGGCGTAGTGGGGATCTAGGATGCTGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCGAGACAAACCGGAGGGAGGGCGTAGTGGGGATCTAGGATGCTGAG  250

seq1  AAACGGTTTTCCTAAAAGCACAGACGCATGCTCAGTTCCACCTCTCCTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACGGTTTTCCTAAAAGCACAGACGCATGCTCAGTTCCACCTCTCCTCT  300

seq1  CCAAGAGCGTTGCCTCCCATATAAGGGCAGAAGGAGGCGGGCGTCTGGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGAGCGTTGCCTCCCATATAAGGGCAGAAGGAGGCGGGCGTCTGGAT  350

seq1  ACCCAACCCCACCGGGGGAGTGGCGGAGCAGCCAAAGGAAAACAACATTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAACCCCACCGGGGGAGTGGCGGAGCAGCCAAAGGAAAACAACATTT  400

seq1  CTTTTTCTTGAAATGAGACTGCCAGGGTAAGGCCACGGAGGTAAGACTAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTCTTGAAATGAGACTGCCAGGGTAAGGCCACGGAGGTAAGACTAG  450

seq1  GAAACTAGATGGCCAAGATCAAGGACCTCGGAGGGAGGAAAACCCTGAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACTAGATGGCCAAGATCAAGGACCTCGGAGGGAGGAAAACCCTGAGG  500

seq1  TGTGTGTCAGAGCAGAAGCACCATCCTAGAAAAGGAAGGAGCTTTTAATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTCAGAGCAGAAGCACCATCCTAGAAAAGGAAGGAGCTTTTAATC  550

seq1  TTCTGCCTCAGGTCTGGGGAAGGAATCTTCATGCTAATTAATTGTAAGAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGCCTCAGGTCTGGGGAAGGAATCTTCATGCTAATTAATTGTAAGAC  600

seq1  CTGGACTCCTCCCTAACTCGTTTAAAAGTCCTACTTGACAAACAAGTAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGACTCCTCCCTAACTCGTTTAAAAGTCCTACTTGACAAACAAGTAAT  650

seq1  TTCTATTTACCATCATAATCCTCCCTGAGAACTATAATATATACTATATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATTTACCATCATAATCCTCCCTGAGAACTATAATATATACTATATA  700

seq1  TACATTTCTTGATCTACTATCTCACCAATATTAATTTGTTAAACCAGCAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTTCTTGATCTACTATCTCACCAATATTAATTTGTTAAACCAGCAA  750

seq1  ACCCCAACAAAGATATTGCTAAATTAGACTTACATAAATTTTTTAAATGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCAACAAAGATATTGCTAAATTAGACTTACATAAATTTTTTAAATGG  800

seq1  GTAATAGACGAAATCAAAGGGTCCAGTCGCCCCTCTAAGTGCTTCCATTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATAGACGAAATCAAAGGGTCCAGTCGCCCCTCTAAGTGCTTCCATTA  850

seq1  GCAGACACACAGACTGAATCTGTGTGTGGAGTCGGCTCAAATTCCTAAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGACACACAGACTGAATCTGTGTGTGGAGTCGGCTCAAATTCCTAAAA  900

seq1  TCACTCTATTTTGTAGCGCTAATCCCACACCAGCAGCCTGTTCTCAC-AA  949
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TCACTCTATTTTGTAGCGCTAATCCCACACCAGCAGCCTGTTCTCACAAA  950

seq1  AATAGCGCCCCCAATCATCTCTTGTCGGGGACCAACCACGACCCTCTGTC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGCGCCCCCAATCATCTCTTGTCGGGGACCAACCACGACCCTCTGTC  1000

seq1  CTGGCCCAGCTT--CCCCTCA-TTTCCCCACCTCAAGAGCCAAAGTGGCT  1046
      ||||||||||||  ||||||| ||||||||| || |||| ||||||||||
seq2  CTGGCCCAGCTTTCCCCCTCATTTTCCCCACTTC-AGAG-CAAAGTGGCT  1048

seq1  TCAGCTCACCATTTGACTTGTGTCCCTCCCATGG-TCCCCTCCTGGCTCT  1095
      ||||||||||||||||||||||||||||| |||| ||||||| |||||||
seq2  TCAGCTCACCATTTGACTTGTGTCCCTCCAATGGTTCCCCTCTTGGCTCT  1098

seq1  GG-CTTCAG-CAAGC  1108
      || |||||| |||||
seq2  GGCCTTCAGCCAAGC  1113