MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	B6Ng01-242M23
Chromosome	9 (Build37)
Map Location	47,813,755 - 47,943,884
singlet/doublet	doublet
Overlap gene	none
Upstream gene	Cadm1, LOC100043303
Downstream gene	D930028F11Rik, 4432416J03Rik, EG640268, EG434401, LOC667933, Rexo2, Rbm7, EG434402, Nnmt, Zbtb16, Htr3a, Htr3b, Usp28, LOC100042785, Zw10, EG629400, Tmprss5
Link	Open Mouse BAC browser

Click to get alignment info.

name	Cadm1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:54725 MGI:1889272
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 4 mRNAs

name	LOC100043303 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100043303
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 Protein pseudo : _no_value

name	D930028F11Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:244853 MGI:1924792
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	4432416J03Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:78252 MGI:1925502
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	EG640268 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:640268 MGI:3646632
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 Proteins

name	EG434401 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:434401 MGI:3646416
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 10 mRNAs, 449 ESTs, 5 Proteins

name	LOC667933 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:667933
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 Proteins pseudo : _no_value

name	Rexo2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:104444 MGI:1888981
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Rbm7 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:67010 MGI:1914260
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	EG434402 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:434402 MGI:3643566
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 106 ESTs, 2 Proteins

name	Nnmt (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:18113 MGI:1099443
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Zbtb16 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:235320 MGI:103222
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Htr3a (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:15561 MGI:96282
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Htr3b (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:57014 MGI:1861899
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Usp28 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:235323 MGI:2442293
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100042785 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100042785
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 Protein

name	Zw10 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:26951 MGI:1349478
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	EG629400 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:629400 MGI:3644838
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 Proteins pseudo : _no_value

name	Tmprss5 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:80893 MGI:1933407
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Cadm1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:71040101 GeneID:54725 MGI:1889272
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : cell adhesion molecule 1 transcript_id : NM_207675.2

name	Cadm1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:71040103 GeneID:54725 MGI:1889272
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : cell adhesion molecule 1 transcript_id : NM_018770.3

name	Cadm1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:71040105 GeneID:54725 MGI:1889272
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : cell adhesion molecule 1 transcript_id : NM_207676.2

name	Cadm1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:71040106 GeneID:54725 MGI:1889272
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : cell adhesion molecule 1 transcript_id : NM_001025600.1

name	D930028F11Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:70778977 GeneID:244853 MGI:1924792
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA D930028F11 gene transcript_id : NM_172921.2

name	4432416J03Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142357233 GeneID:78252 MGI:1925502
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 4432416J03 gene transcript_id : NM_030069.2

name	EG640268 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149259925 GeneID:640268 MGI:3646632
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 Proteins product : predicted gene, EG640268 transcript_id : XM_001478763.1

name	EG434401 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149259955 GeneID:434401 MGI:3646416
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 10 mRNAs, 449 ESTs, 5 Proteins product : predicted gene, EG434401 transcript_id : XM_486217.5

name	Rexo2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141802136 GeneID:104444 MGI:1888981
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : REX2, RNA exonuclease 2 homolog (S. cerevisiae) transcript_id : NM_024233.3

name	Rbm7 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141801547 GeneID:67010 MGI:1914260
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RNA binding motif protein 7 transcript_id : NM_144948.3

name	EG434402 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149259956 GeneID:434402 MGI:3643566
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 106 ESTs, 2 Proteins product : predicted gene, EG434402 transcript_id : XM_001479948.1

name	Nnmt (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:144922620 GeneID:18113 MGI:1099443
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : nicotinamide N-methyltransferase transcript_id : NM_010924.2

name	Zbtb16 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142382613 GeneID:235320 MGI:103222
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : zinc finger and BTB domain containing 16 transcript_id : NM_001033324.2

name	Htr3a (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:7305174 GeneID:15561 MGI:96282
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : 5-hydroxytryptamine (serotonin) receptor 3A transcript_id : NM_013561.1

name	Htr3b (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142384615 GeneID:57014 MGI:1861899
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : 5-hydroxytryptamine (serotonin) receptor 3B transcript_id : NM_020274.3

name	Usp28 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:46852150 GeneID:235323 MGI:2442293
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ubiquitin specific peptidase 28 transcript_id : NM_175482.3

name	LOC100042785 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149259927 GeneID:100042785
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 Protein product : similar to hCG1646420 transcript_id : XM_001478811.1

name	Zw10 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:22165348 GeneID:26951 MGI:1349478
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ZW10 homolog (Drosophila), centromere/kinetochore protein transcript_id : NM_012039.1

name	Tmprss5 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:13507651 GeneID:80893 MGI:1933407
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : transmembrane protease, serine 5 (spinesin) transcript_id : NM_030709.1

name	Cadm1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:71040102 CCDS:CCDS23149.1 GeneID:54725 MGI:1889272
definition	GO_component : GO:0030424 - axon [Evidence IDA]; GO:0016323 - basolateral plasma membrane [Evidence IDA]; GO:0030425 - dendrite [Evidence IDA]; GO:0005911 - intercellular junction [Evidence IDA]; GO:0016020 - membrane [Evidence IEA]; GO:0005886 - plasma membrane [Evidence IDA]; GO:0045202 - synapse [Evidence IDA]; GO:0008021 - synaptic vesicle [Evidence IDA] GO_function : GO:0030165 - PDZ domain binding [Evidence IPI]; GO:0005515 - protein binding [Evidence IPI]; GO:0008022 - protein C-terminus binding [Evidence IPI]; GO:0042803 - protein homodimerization activity [Evidence IDA]; GO:0005102 - receptor binding [Evidence IPI] GO_process : GO:0016338 - calcium-independent cell-cell adhesion [Evidence IDA]; GO:0007155 - cell adhesion [Evidence IDA]; GO:0008037 - cell recognition [Evidence IDA]; GO:0051606 - detection of stimulus [Evidence IDA]; GO:0007157 - heterophilic cell adhesion [Evidence IDA]; GO:0007156 - homophilic cell adhesion [Evidence IDA]; GO:0050715 - positive regulation of cytokine secretion [Evidence ISS]; GO:0042271 - susceptibility to natural killer cell mediated cytotoxicity [Evidence IDA]; GO:0007416 - synaptogenesis [Evidence IDA] codon_start : 1 note : isoform a is encoded by transcript variant 1; immunosuperfamily protein Bl2; immunoglobulin superfamily, member 4A product : immunoglobulin superfamily, member 4A isoform a protein_id : NP_997558.2

name	Cadm1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:71040104 CCDS:CCDS23148.1 GeneID:54725 MGI:1889272
definition	GO_component : GO:0030424 - axon [Evidence IDA]; GO:0016323 - basolateral plasma membrane [Evidence IDA]; GO:0030425 - dendrite [Evidence IDA]; GO:0005911 - intercellular junction [Evidence IDA]; GO:0016020 - membrane [Evidence IEA]; GO:0005886 - plasma membrane [Evidence IDA]; GO:0045202 - synapse [Evidence IDA]; GO:0008021 - synaptic vesicle [Evidence IDA] GO_function : GO:0030165 - PDZ domain binding [Evidence IPI]; GO:0005515 - protein binding [Evidence IPI]; GO:0008022 - protein C-terminus binding [Evidence IPI]; GO:0042803 - protein homodimerization activity [Evidence IDA]; GO:0005102 - receptor binding [Evidence IPI] GO_process : GO:0016338 - calcium-independent cell-cell adhesion [Evidence IDA]; GO:0007155 - cell adhesion [Evidence IDA]; GO:0008037 - cell recognition [Evidence IDA]; GO:0051606 - detection of stimulus [Evidence IDA]; GO:0007157 - heterophilic cell adhesion [Evidence IDA]; GO:0007156 - homophilic cell adhesion [Evidence IDA]; GO:0050715 - positive regulation of cytokine secretion [Evidence ISS]; GO:0042271 - susceptibility to natural killer cell mediated cytotoxicity [Evidence IDA]; GO:0007416 - synaptogenesis [Evidence IDA] codon_start : 1 note : isoform c is encoded by transcript variant 3; immunosuperfamily protein Bl2; immunoglobulin superfamily, member 4A product : immunoglobulin superfamily, member 4A isoform c protein_id : NP_061240.3

name	Cadm1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:46575940 CCDS:CCDS23150.1 GeneID:54725 MGI:1889272
definition	GO_component : GO:0030424 - axon [Evidence IDA]; GO:0016323 - basolateral plasma membrane [Evidence IDA]; GO:0030425 - dendrite [Evidence IDA]; GO:0005911 - intercellular junction [Evidence IDA]; GO:0016020 - membrane [Evidence IEA]; GO:0005886 - plasma membrane [Evidence IDA]; GO:0045202 - synapse [Evidence IDA]; GO:0008021 - synaptic vesicle [Evidence IDA] GO_function : GO:0030165 - PDZ domain binding [Evidence IPI]; GO:0005515 - protein binding [Evidence IPI]; GO:0008022 - protein C-terminus binding [Evidence IPI]; GO:0042803 - protein homodimerization activity [Evidence IDA]; GO:0005102 - receptor binding [Evidence IPI] GO_process : GO:0016338 - calcium-independent cell-cell adhesion [Evidence IDA]; GO:0007155 - cell adhesion [Evidence IDA]; GO:0008037 - cell recognition [Evidence IDA]; GO:0051606 - detection of stimulus [Evidence IDA]; GO:0007157 - heterophilic cell adhesion [Evidence IDA]; GO:0007156 - homophilic cell adhesion [Evidence IDA]; GO:0050715 - positive regulation of cytokine secretion [Evidence ISS]; GO:0042271 - susceptibility to natural killer cell mediated cytotoxicity [Evidence IDA]; GO:0007416 - synaptogenesis [Evidence IDA] codon_start : 1 note : isoform b is encoded by transcript variant 2; immunosuperfamily protein Bl2; immunoglobulin superfamily, member 4A product : immunoglobulin superfamily, member 4A isoform b protein_id : NP_997559.1

name	Cadm1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:71040107 CCDS:CCDS23147.1 GeneID:54725 MGI:1889272
definition	GO_component : GO:0030424 - axon [Evidence IDA]; GO:0016323 - basolateral plasma membrane [Evidence IDA]; GO:0030425 - dendrite [Evidence IDA]; GO:0005911 - intercellular junction [Evidence IDA]; GO:0016020 - membrane [Evidence IEA]; GO:0005886 - plasma membrane [Evidence IDA]; GO:0045202 - synapse [Evidence IDA]; GO:0008021 - synaptic vesicle [Evidence IDA] GO_function : GO:0030165 - PDZ domain binding [Evidence IPI]; GO:0005515 - protein binding [Evidence IPI]; GO:0008022 - protein C-terminus binding [Evidence IPI]; GO:0042803 - protein homodimerization activity [Evidence IDA]; GO:0005102 - receptor binding [Evidence IPI] GO_process : GO:0016338 - calcium-independent cell-cell adhesion [Evidence IDA]; GO:0007155 - cell adhesion [Evidence IDA]; GO:0008037 - cell recognition [Evidence IDA]; GO:0051606 - detection of stimulus [Evidence IDA]; GO:0007157 - heterophilic cell adhesion [Evidence IDA]; GO:0007156 - homophilic cell adhesion [Evidence IDA]; GO:0050715 - positive regulation of cytokine secretion [Evidence ISS]; GO:0042271 - susceptibility to natural killer cell mediated cytotoxicity [Evidence IDA]; GO:0007416 - synaptogenesis [Evidence IDA] codon_start : 1 note : isoform d is encoded by transcript variant 4; immunosuperfamily protein Bl2; immunoglobulin superfamily, member 4A product : immunoglobulin superfamily, member 4A isoform d protein_id : NP_001020771.1

name	4432416J03Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21313426 CCDS:CCDS23151.1 GeneID:78252 MGI:1925502
definition	codon_start : 1 exception : mismatches in translation product : hypothetical protein LOC78252 protein_id : NP_084345.1

name	D930028F11Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:70778978 CCDS:CCDS23152.1 GeneID:244853 MGI:1924792
definition	codon_start : 1 product : hypothetical protein LOC244853 protein_id : NP_766509.2

name	EG640268 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149259926 GeneID:640268 MGI:3646632
definition	codon_start : 1 product : similar to protein of unknown function protein_id : XP_001478813.1

name	EG434401 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:82930015 GeneID:434401 MGI:3646416
definition	codon_start : 1 product : similar to nuclear protein-NHP2-like protein protein_id : XP_486217.2

name	Rexo2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:27229283 CCDS:CCDS23154.1 GeneID:104444 MGI:1888981
definition	GO_component : GO:0005622 - intracellular [Evidence IEA]; GO:0005739 - mitochondrion [Evidence IDA] GO_function : GO:0008408 - 3'-5' exonuclease activity [Evidence ISS]; GO:0004527 - exonuclease activity [Evidence IEA] GO_process : GO:0006139 - nucleobase, nucleoside, nucleotide and nucleic acid metabolism [Evidence ISS] codon_start : 1 product : small fragment nuclease protein_id : NP_077195.2

name	Rbm7 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:27753952 CCDS:CCDS23155.1 GeneID:67010 MGI:1914260
definition	GO_function : GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0003723 - RNA binding [Evidence IEA] GO_process : GO:0007126 - meiosis [Evidence IEA] codon_start : 1 product : RNA binding motif protein 7 protein_id : NP_659197.2

name	EG434402 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149259957 GeneID:434402 MGI:3643566
definition	codon_start : 1 product : hypothetical protein LOC434402 protein_id : XP_001479998.1

name	Nnmt (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6754866 CCDS:CCDS23157.1 GeneID:18113 MGI:1099443
definition	GO_function : GO:0008168 - methyltransferase activity [Evidence IEA]; GO:0008112 - nicotinamide N-methyltransferase activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA] codon_start : 1 product : nicotinamide N-methyltransferase protein_id : NP_035054.1

name	Zbtb16 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:84794629 CCDS:CCDS23158.1 GeneID:235320 MGI:103222
definition	GO_component : GO:0005622 - intracellular [Evidence IEA]; GO:0016607 - nuclear speck [Evidence ISS]; GO:0005634 - nucleus [Evidence IDA] [Evidence ISS]; GO:0017053 - transcriptional repressor complex [Evidence ISS] GO_function : GO:0003677 - DNA binding [Evidence ISS]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0005515 - protein binding [Evidence ISS] [Evidence IPI]; GO:0042803 - protein homodimerization activity [Evidence ISS]; GO:0016566 - specific transcriptional repressor activity [Evidence ISS]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0009952 - anterior/posterior pattern formation [Evidence IMP]; GO:0007417 - central nervous system development [Evidence IDA]; GO:0035116 - embryonic hindlimb morphogenesis [Evidence IMP]; GO:0030326 - embryonic limb morphogenesis [Evidence IMP]; GO:0009880 - embryonic pattern specification [Evidence IMP]; GO:0035136 - forelimb morphogenesis [Evidence IMP]; GO:0035110 - leg morphogenesis [Evidence IMP]; GO:0048133 - male germ-line stem cell division [Evidence IMP]; GO:0001823 - mesonephros development [Evidence IDA]; GO:0030099 - myeloid cell differentiation [Evidence ISS]; GO:0008285 - negative regulation of cell proliferation [Evidence IMP]; GO:0045638 - negative regulation of myeloid cell differentiation [Evidence IDA]; GO:0045892 - negative regulation of transcription, DNA-dependent [Evidence ISS]; GO:0043065 - positive regulation of apoptosis [Evidence IMP]; GO:0045449 - regulation of transcription [Evidence IMP]; GO:0001501 - skeletal development [Evidence IMP] codon_start : 1 note : luxoid; Green's luxoid; zinc finger protein 145 product : zinc finger and BTB domain containing 16 protein_id : NP_001028496.1

name	Htr3a (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:7305175 GeneID:15561 MGI:96282
definition	GO_component : GO:0016020 - membrane [Evidence IEA]; GO:0045211 - postsynaptic membrane [Evidence IEA] GO_function : GO:0005230 - extracellular ligand-gated ion channel activity [Evidence IEA]; GO:0005216 - ion channel activity [Evidence IEA]; GO:0030594 - neurotransmitter receptor activity [Evidence IEA]; GO:0004872 - receptor activity [Evidence IEA] GO_process : GO:0006811 - ion transport [Evidence IEA]; GO:0006810 - transport [Evidence IEA] codon_start : 1 exception : unclassified translation discrepancy note : 5HT3 serotonin receptor product : 5-hydroxytryptamine (serotonin) receptor 3A protein_id : NP_038589.1

name	Htr3b (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:9938026 CCDS:CCDS23160.1 GeneID:57014 MGI:1861899
definition	GO_component : GO:0005887 - integral to plasma membrane [Evidence IDA]; GO:0045211 - postsynaptic membrane [Evidence IEA] GO_function : GO:0030594 - neurotransmitter receptor activity [Evidence IEA]; GO:0004872 - receptor activity [Evidence IEA]; GO:0004993 - serotonin receptor activity [Evidence ISS] [Evidence IDA]; GO:0005232 - serotonin-activated cation-selective channel activity [Evidence ISS] [Evidence IDA] GO_process : GO:0006811 - ion transport [Evidence IEA]; GO:0007210 - serotonin receptor signaling pathway [Evidence ISS] [Evidence IDA] codon_start : 1 note : 5-HT3 receptor subunit B product : 5-hydroxytryptamine (serotonin) receptor 3B precursor protein_id : NP_064670.1

name	Usp28 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:46852151 GeneID:235323 MGI:2442293
definition	GO_function : GO:0005488 - binding [Evidence IEA]; GO:0008234 - cysteine-type peptidase activity [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]; GO:0008233 - peptidase activity [Evidence IEA] GO_process : GO:0006512 - ubiquitin cycle [Evidence IEA] codon_start : 1 product : ubiquitin specific protease 28 protein_id : NP_780691.2

name	LOC100042785 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149259928 GeneID:100042785
definition	codon_start : 1 product : similar to hCG1646420 protein_id : XP_001478861.1

name	Zw10 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:22165349 CCDS:CCDS23161.1 GeneID:26951 MGI:1349478
definition	GO_component : GO:0000775 - chromosome, pericentric region [Evidence IEA]; GO:0005783 - endoplasmic reticulum [Evidence ISS] [Evidence IEA]; GO:0000776 - kinetochore [Evidence ISS]; GO:0005828 - kinetochore microtubule [Evidence ISS]; GO:0005634 - nucleus [Evidence ISS] [Evidence IEA]; GO:0000922 - spindle pole [Evidence ISS] GO_function : GO:0019237 - centromeric DNA binding [Evidence ISS] GO_process : GO:0007049 - cell cycle [Evidence IEA]; GO:0051301 - cell division [Evidence IEA]; GO:0006888 - ER to Golgi vesicle-mediated transport [Evidence ISS] [Evidence IEA]; GO:0007126 - meiosis [Evidence ISS]; GO:0007067 - mitosis [Evidence IEA]; GO:0007093 - mitotic checkpoint [Evidence ISS]; GO:0000070 - mitotic sister chromatid segregation [Evidence ISS]; GO:0006461 - protein complex assembly [Evidence ISS]; GO:0007096 - regulation of exit from mitosis [Evidence ISS]; GO:0006810 - transport [Evidence IEA] codon_start : 1 product : centromere/kinetochore protein zw10 protein_id : NP_036169.1

name	Tmprss5 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:13507652 GeneID:80893 MGI:1933407
definition	GO_component : GO:0016020 - membrane [Evidence IEA] GO_function : GO:0016787 - hydrolase activity [Evidence IEA]; GO:0008233 - peptidase activity [Evidence IEA]; GO:0005044 - scavenger receptor activity [Evidence IEA]; GO:0004252 - serine-type endopeptidase activity [Evidence IEA] GO_process : GO:0006508 - proteolysis [Evidence IEA] codon_start : 1 exception : mismatches in translation product : transmembrane protease, serine 5 (spinesin) protein_id : NP_109634.1

name	LOC100043303 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100043303
definition	number : 1 pseudo : _no_value

name	LOC667933 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:667933
definition	number : 1 pseudo : _no_value

name	EG629400 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:629400
definition	number : 1 pseudo : _no_value

clone name	MSMg01-079O16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-120L05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-053K13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-079N20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-053E11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-050K08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-404D22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-515F16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-373A02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-456C13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-172M09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-081B14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-265K19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-111I06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-489J12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-263A18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-322I10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-141M07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-421M02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-345N05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-328D07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-145N16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-209D13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-056M17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-145F08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-231H07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-301F09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-186E14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-134L10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-521E14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-422L11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-364K20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-444B06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-181K16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-502F21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-416J19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-393C24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-488O13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-167B11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-427A23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-360N01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-438A09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-453N24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-114E19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-542I10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-092P18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-430C08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-429M16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-422P16
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-455B24
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-213P05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-140N21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-430N06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-460I02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-472M01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-460K02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-501O16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-170N21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-416D11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-438P06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-438P07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-355E06
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-523B24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-535M19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-357B20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-357B22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-398J16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-477H10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-073E07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-534L11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-235G15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-513D19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-488M20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-173H17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-325B05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-413I14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-101N24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-330H19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-413K01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-426N07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-115P03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-134A16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-356D13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-278B21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-269I03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-141O23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-458O12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-359G12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-418E06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-059G12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-266M23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-030K21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-114F16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-326P01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-224F15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-031E03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-177E22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-267E03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-119L19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-225G19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-009E16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-275E12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-101H19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-157F21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-018F24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-036L02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-056N14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-128H01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-306L07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-150O13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-169M14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-128M05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-067C21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-076P16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-261O02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-178A08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-113A14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-333O03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-257P13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-292B02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-320P10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-024K06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-200D19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-149E21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-050F12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-153B22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-285I08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-242M23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-248E23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-298M03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-136D12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-102N01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-087F03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-317L21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-194G19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-239D24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-151C03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-079P06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-050O24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-105C23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-115E13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-115G01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-271O23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-174E22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-138N02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-257L01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-152C10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-142H21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-116J23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-004G08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-131B22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-002C24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-106G15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-289C21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-203O07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-179H19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-052P02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-234N12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-162G07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-080N12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-008F11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-332G10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-334D11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-309P15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-329G07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-325C21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-336J03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-211K09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-316D03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-343K10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-234N10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-262A17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-219B04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-223F04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-096P17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-291O22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-247A16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-118B13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-075F04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-189M09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-269H17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-241G08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-178M10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-024F08
singlet/doublet	doublet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	B6Ng01-242M23.b	B6Ng01-242M23.g
ACC	GA052355	GA052356
length	246	1,132
definition	B6Ng01-242M23.b	B6Ng01-242M23.g
singlet/doublet	doublet	doublet
BLAST hit	unique	unique
Map location.	(47,813,755 - 47,814,000)	(47,942,746 - 47,943,884)
sequence	ttactaatatattgttctgggttttttttttcttgttgttgggttttttt gttttttgtttttttttgcttttatgttggaaatttcattcttaatttta aacacttttaactgaagtttatatataaaacttcatatgtctgtgtatgt atgtttgtgtatttattgtatacatatatgtatatattgtatatatatat taaagtaatatattcagtatatattgaagtattttatgtgtgtatg	gaattccaccttccccaccaggtagaagaaagattgtccttaaaaatacc ttcaacttgggtctggggtgccagagagacaagggtccaaggaagatgga ggcattctaggcccatttggaaaggctatgaaaagctaaaaggttttcaa tacagagagaggccgaatgagagatatccaaaaagaagctgggaattaga aataatgccactacaagtatctacattttcctaacagccaagaagtttca gatgccaaaactgcctacacaggtgatggatcgctccagccccagaaatg tggctctgtgacacaattaacctcttgatgagagattcctctcagttaaa tttttgttgacaggtgtccgaacctagacaactttgaagcttgactgaca gctggagaaggggaggtctcagtcccatctccccctctcaccccatcttc ccacctcttctccaatcccttctgggcactgagccctcttctccagtgaa cattgctttgtccctcacttctgtttgaatggagacctctcctatctcca tctgtgccctcagaggtcacagtacatattttaaaaccagcgtgtagaag tcctctaggtggagagctccagcttgtgtgtatcatttgccttggtttgc ccattaggttgtagaggcgcaacaaatacttctgaaagaatggtgacatc agtaatcacagaacaatgaatcaggtccagtagttatccacctttggcat gctaatgtgggggcttgggatataaaggcacatttaaagaaattaaatta cttgagataacactaacgcggtcaccccaaagctactttgcaaccaccac tgtagtacacaaaacatcttgctgtctctataaaagcgtgcaaagccatt gcactgctcactgggtggaattattatatgccattaagactgctctccca cagggctggggatagagttccatggcacagccctgtcttgtatttgcaag accctgagttcaccctcagtgccacaaacaaacaaacaaactacaaaaac agggcagaacgacttctgcatctatgaacctggcatcttggggaagtcac atcacctggtcttgtacaagttagtcaaaggg
quality values	Open. Hide. 46 58 62 52 52 52 62 62 42 47 47 47 62 41 47 62 54 47 62 62 62 62 62 59 56 56 56 38 38 46 46 38 43 56 33 56 59 54 59 62 62 62 59 62 62 62 62 62 62 62 59 62 54 54 62 62 62 59 62 62 62 62 62 62 62 62 62 54 59 62 54 62 59 62 59 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 54 62 62 62 62 62 62 59 62 62 49 62 62 62 49 49 62 59 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 54 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 54 62 62 62 62 62 62 62 54 49 54 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 54 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 46 56 56 56 56 59 59 62 62 62 62 62 56 62 59 62 62 59 46 46 45 45 27 34 28 34 39 14 24 34	Open. Hide. 62 59 51 59 62 62 59 39 62 62 62 49 62 59 59 54 28 38 46 49 62 54 54 62 62 62 62 62 62 62 62 62 59 59 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 54 62 62 62 62 62 62 62 62 62 62 62 42 62 62 42 33 33 54 59 62 62 62 62 62 62 62 62 62 62 62 62 62 54 62 62 59 59 62 62 59 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 59 62 62 62 59 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 59 62 59 62 49 54 62 62 62 62 62 62 62 59 62 62 59 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 54 54 62 56 62 62 54 62 62 62 62 62 62 62 62 49 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 54 54 62 62 62 59 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 59 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 49 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 49 54 62 62 62 62 62 62 62 62 62 62 49 54 62 62 62 62 62 62 54 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 38 62 62 62 62 62 62 62 62 62 62 62 62 62 62 52 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 58 58 58 58 58 58 58 58 58 58 58 58 54 53 58 58 58 58 58 58 58 54 58 54 58 47 58 54 58 58 58 54 54 58 58 58 58 58 58 58 58 58 58 58 58 58 58 54 58 58 58 58 58 58 41 58 58 58 58 52 58 58 58 58 53 45 41 47 58 58 58 58 58 58 58 58 54 58 50 58 41 58 53 58 58 58 58 58 41 49 58 53 51 48 58 53 58 58 58 50 54 58 58 58 49 58 49 58 51 58 58 58 48 50 58 58 49 48 58 40 54 58 58 58 58 49 53 46 58 54 46 54 50 54 58 53 58 49 33 58 53 58 58 58 32 51 50 51 54 47 44 27 52 58 58 50 58 52 58 49 58 50 52 53 51 50 50 58 58 52 51 58 49 50 58 53 52 54 54 38 34 49 40 37 54 49 53 32 54 38 54 54 45 53 45 44 22 34 37 42 51 39 49 49 31 54 50 50 40 47 42 54 52 52 49 50 54 47 45 54 36 35 52 47 27 51 30 27 31 53 52 37 40 40 42 51 52 45 40 42 35 34 48 54 34 40 47 47 52 51 41 39 40 26 5 13 33 31 33 24 40 40 45 33 51 46 31 34 28 40 31 51 41 32 53 32 47 45 33 32 32 45 31 35 29 35 31 52 31 34 47 51 49 36 32 31 31 30 51 41 30 29 31 39 35 51 30 29 42 24 23 31 30 31 51 30 24 51 35 34 32 51 28 30 31 36 51 31 31 45 27 31 15 29 32 42 30 30 31 37 32 32 31 34 31 31 31 32 31 43 27 25 11 30 25 40 41 46 26 19 46 42 24 34 32 31 31 31 47 43 30 30 35 42 32 36 23 30 18 19 29 26 24 22 37 24 24 32 31 25 30 26 36 41 39 26 21 36 30 31 28 38 33 31 30 31 31 30 26 31 30 33 31 48 44 32 29 31 33 34 32 29 32 44 26 31 32 29 13 31 26 22 28 19 25 31 31 25 29 31 27 31 21 21 47 31 14 17 22 17 22 18 26 24 21 19 21 16 16 30 22 19 25 23 23 23 11 29 14 30 27 32 37 32 32 21 22 25 43 13 19 16 24 22 43 25 11 30 31 39 34 28 33 19 17 24 34 22 18 16 16 18 14 25 17 25 10 15 8 14 8 21 29 17 11 8 8 12 27 7 10 10 24 28 38 28 19 26 15 10 3 3 6 28 23 19 14 21 9 23 21 16 13 3 22 11 27 20 10 6 8 15 18 26 8 18 21 38 25 9 7 26 10 12 6 21 10 5 3 26 5 20 6 20 22 12 25 26 24 18 17 5 5 20 24 10 17 5 9 18 13 5 16 8 16 5 6 9 23 10 16 15 19 9 20 6 10 11 13 8 9 9 9 19 4 7 10 9 6 18 8 22 29 13 6 5 15 4 5 6 7 4 7 4 12 8 12 3 6 4 1 3 7 8 4 3 4 13 10 25 4 14 9 7 4 6 5 8 28 9 4 25 5

Alignment Information

BAC End 1

BAC End 2

seq1: chr9_47813755_47814000
seq2: B6Ng01-242M23.b_47_292

seq1  TTACTAATATATTGTTCTGGGTTTTTTTTTTCTTGTTGTTGGGTTTTTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTAATATATTGTTCTGGGTTTTTTTTTTCTTGTTGTTGGGTTTTTTT  50

seq1  GTTTTTTGTTTTTTTTTGCTTTTATGTTGGAAATTTCATTCTTAATTTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTTGTTTTTTTTTGCTTTTATGTTGGAAATTTCATTCTTAATTTTA  100

seq1  AACACTTTTAACTGAAGTTTATATATAAAACTTCATATGTCTGTGTATGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACTTTTAACTGAAGTTTATATATAAAACTTCATATGTCTGTGTATGT  150

seq1  ATGTTTGTGTATTTATTGTATACATATATGTATATATTGTATATATATAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTGTGTATTTATTGTATACATATATGTATATATTGTATATATATAT  200

seq1  TAAAGTAATATATTCAGTATATATTGAAGTATTTTATGTGTGTATG  246
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGTAATATATTCAGTATATATTGAAGTATTTTATGTGTGTATG  246

seq1: chr9_47942746_47943884
seq2: B6Ng01-242M23.g_66_1197 (reverse)

seq1  CCCTTTGACTAACTTGTACAAGACCAGGGTGATGTGACCT-CCCAAGATG  49
      |||||||||||||||||||||||||| ||||||||||| | |||||||||
seq2  CCCTTTGACTAACTTGTACAAGACCA-GGTGATGTGACTTCCCCAAGATG  49

seq1  CCCAGGTTCATTAGGATGCCAGAGTCG-TCTGCCCCTTGTTTTTGTTGTT  98
       ||||||||||   |||||   ||||| |||||||  ||||||||| |||
seq2  -CCAGGTTCAT--AGATGCAGAAGTCGTTCTGCCC--TGTTTTTGTAGTT  94

seq1  TGTTTGTTTGTTTTGTGGCACTGAGGGTTGAACTCAGGGGCCTTGCAAAT  148
      |||||||||| |||||||||||||||| |||||||| ||| |||||||||
seq2  TGTTTGTTTG-TTTGTGGCACTGAGGG-TGAACTCA-GGGTCTTGCAAAT  141

seq1  ACAAGACAGGGCTGTGCCATGGAACTCTATCCCCAGCCCTGTGGGAGAGC  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGACAGGGCTGTGCCATGGAACTCTATCCCCAGCCCTGTGGGAGAGC  191

seq1  AGTCTTAATGGCATATAATAATTCCACCCAGTGAGCAGTGCAATGGCTTT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTTAATGGCATATAATAATTCCACCCAGTGAGCAGTGCAATGGCTTT  241

seq1  GCACGCTTTTATAGAGACAGCAAGATGTTTTGTGTACTACAGTGGTGGTT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACGCTTTTATAGAGACAGCAAGATGTTTTGTGTACTACAGTGGTGGTT  291

seq1  GCAAAGTAGCTTTGGGGTGACCGCGTTAGTGTTATCTCAAGTAATTTAAT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAGTAGCTTTGGGGTGACCGCGTTAGTGTTATCTCAAGTAATTTAAT  341

seq1  TTCTTTAAATGTGCCTTTATATCCCAAGCCCCCACATTAGCATGCCAAAG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTAAATGTGCCTTTATATCCCAAGCCCCCACATTAGCATGCCAAAG  391

seq1  GTGGATAACTACTGGACCTGATTCATTGTTCTGTGATTACTGATGTCACC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGATAACTACTGGACCTGATTCATTGTTCTGTGATTACTGATGTCACC  441

seq1  ATTCTTTCAGAAGTATTTGTTGCGCCTCTACAACCTAATGGGCAAACCAA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTTCAGAAGTATTTGTTGCGCCTCTACAACCTAATGGGCAAACCAA  491

seq1  GGCAAATGATACACACAAGCTGGAGCTCTCCACCTAGAGGACTTCTACAC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAATGATACACACAAGCTGGAGCTCTCCACCTAGAGGACTTCTACAC  541

seq1  GCTGGTTTTAAAATATGTACTGTGACCTCTGAGGGCACAGATGGAGATAG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGTTTTAAAATATGTACTGTGACCTCTGAGGGCACAGATGGAGATAG  591

seq1  GAGAGGTCTCCATTCAAACAGAAGTGAGGGACAAAGCAATGTTCACTGGA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGGTCTCCATTCAAACAGAAGTGAGGGACAAAGCAATGTTCACTGGA  641

seq1  GAAGAGGGCTCAGTGCCCAGAAGGGATTGGAGAAGAGGTGGGAAGATGGG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGGGCTCAGTGCCCAGAAGGGATTGGAGAAGAGGTGGGAAGATGGG  691

seq1  GTGAGAGGGGGAGATGGGACTGAGACCTCCCCTTCTCCAGCTGTCAGTCA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGAGGGGGAGATGGGACTGAGACCTCCCCTTCTCCAGCTGTCAGTCA  741

seq1  AGCTTCAAAGTTGTCTAGGTTCGGACACCTGTCAACAAAAATTTAACTGA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTCAAAGTTGTCTAGGTTCGGACACCTGTCAACAAAAATTTAACTGA  791

seq1  GAGGAATCTCTCATCAAGAGGTTAATTGTGTCACAGAGCCACATTTCTGG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAATCTCTCATCAAGAGGTTAATTGTGTCACAGAGCCACATTTCTGG  841

seq1  GGCTGGAGCGATCCATCACCTGTGTAGGCAGTTTTGGCATCTGAAACTTC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGGAGCGATCCATCACCTGTGTAGGCAGTTTTGGCATCTGAAACTTC  891

seq1  TTGGCTGTTAGGAAAATGTAGATACTTGTAGTGGCATTATTTCTAATTCC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCTGTTAGGAAAATGTAGATACTTGTAGTGGCATTATTTCTAATTCC  941

seq1  CAGCTTCTTTTTGGATATCTCTCATTCGGCCTCTCTCTGTATTGAAAACC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTTCTTTTTGGATATCTCTCATTCGGCCTCTCTCTGTATTGAAAACC  991

seq1  TTTTAGCTTTTCATAGCCTTTCCAAATGGGCCTAGAATGCCTCCATCTTC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGCTTTTCATAGCCTTTCCAAATGGGCCTAGAATGCCTCCATCTTC  1041

seq1  CTTGGACCCTTGTCTCTCTGGCACCCCAGACCCAAGTTGAAGGTATTTTT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGACCCTTGTCTCTCTGGCACCCCAGACCCAAGTTGAAGGTATTTTT  1091

seq1  AAGGACAATCTTTCTTCTACCTGGTGGGGAAGGTGGAATTC  1139
      |||||||||||||||||||||||||||||||||||||||||
seq2  AAGGACAATCTTTCTTCTACCTGGTGGGGAAGGTGGAATTC  1132

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Alignment Information