BAC Information

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BAC

Clone NameB6Ng01-243L21
Chromosome9 (Build37)
Map Location 115,888,184 - 116,046,650
singlet/doubletdoublet
Overlap geneGadl1, EG668829, Tgfbr2
Upstream geneLOC100043813, Osbpl10, LOC100043812, Stt3b, LOC100039567, LOC670467, EG546164
Downstream geneLOC100043817, LOC100043819, D730003K21Rik, Rbms3
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-243L21.bB6Ng01-243L21.g
ACCGA053046GA053047
length9141,061
definitionB6Ng01-243L21.b B6Ng01-243L21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(115,888,184 - 115,889,079)(116,045,590 - 116,046,650)
sequence
gaattcacagcacatttatgagcaggctagaaggacagaaacagtaagac
agaattgtatcttccatgtagggctcctaatggagcctggtcatgaagct
tctgtttccagactgcggggatacagaaggctcatgtaaaaccaagagta
ctgtatagcagatgtgcctgcctgagaggtgtgtgaggaaccagatgtgg
tggtgacatccttaaccgacacatgtgaggcaagattgtttttgtcaatt
tgaggtcagcctgggcaaccactgagttcaagggtagaataggctagagt
gtgaagttctgtctcaaaaatgaaaaagacacagaaggaaaccacaattt
atagagatttgcaaagtatgaaagtgtagcgtgaaatactttaaaaagca
cccatgctatcgccagcaagacaaaggcagacggcttgttctcatctcgg
cagactttctgacccagagctctgaaatccctccacctggcttgctaagt
tcccatggcggatggctgccatgctcccaaattcccatggccttttgggg
tgcacttcttgtaaacccatgctttgctgccatacctttctctctagaac
ccagctgagttgcccagtgaaaacaccacccaatcttcgcttagaatgaa
aaggcaaaacaatcgtagggcgcagcaatcctgccatcctaatgtataag
ccagtcgaagttgaatcctctgctagaagatcccaatggatctgccaccc
gacctgggggcctccactacctacattttggcctccatgctcctatccgg
caagtccctctcctcttctcctcttctgccatcctgacccagaagtcccg
cctactcacccagtgattggttcctcaaaatctatattttgttttgtttt
gttttttttttttt

gaattcagaggtatatgagtagggctggtgaatcgctcatcagatataag
tcctctttgcacagtcctgaagaacctagttggatccctgagacccaagt
aaagctggaagagaaaaccaactctacaaagttatcccgtgtccatgcta
gggcatgctgtgcccccacctcacatacacgagaataatcaataatcagg
agaacacagttcaatgttacatgaagacactgctggcagaatgttaagca
ttcttgatgaattttcccctaaccttccagccaccagtaaacactgtttc
aaagacatgggccaagaagtcctaatcccaatttaaaaatctgagccctt
cttacccccacaatccttagacaacagtgcttgtctagaaattaacacct
cccttcccagtgagagctcagagccttcggcagtgagtttggggcaatgg
gagagaacgatgcagtaacctttgtgccggggtgaaggttttgctattac
tcaagggcttgtggaagagaagtgaaatgtgttatgtctcatgagtctgt
cacatgctctgacagctgtccctttcataggacagcatgagactttctag
gtgagagagcctcctattactggaacttcttttcagagaacacttcgaat
aattaatttgcctgctactggtataaaattcccaaaggatggccagccgc
taatggaggatctgtagcaattaaaatgtgttgccttcatagcagactgt
ttaagcaaacacacggtgtgtaacaaagctatcaaactgaaaagcgtttt
gaattttgggttgaggttgttgaagagtcagttaggttgtcttggtggtg
ttggagttgttttgtgtcttacataaggggctggtgaagtggaaactcct
ggtttaagcctacagtctggggactgaagtcagattctcttgctgcaagg
caagtgatgcactgatctagctccactccctccgggttaggagagagttc
tgggttggttagattgaatctttgtcctagctgatgatctagacgcacat
cctttgcggtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_115888184_115889079
seq2: B6Ng01-243L21.b_47_960

seq1  GAATTCACAGCACATTTATGAGCAGGCTAGAAGGACAGAAACAGTAAGAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAGCACATTTATGAGCAGGCTAGAAGGACAGAAACAGTAAGAC  50

seq1  AGAATTGTATCTTCCATGTAGGGCTCCTAATGGAGCCTGGTCATGAAGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTGTATCTTCCATGTAGGGCTCCTAATGGAGCCTGGTCATGAAGCT  100

seq1  TCTGTTTCCAGACTGCGGGGATACAGAAGGCTCATGTAAAACCAAGAGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTTCCAGACTGCGGGGATACAGAAGGCTCATGTAAAACCAAGAGTA  150

seq1  CTGTATAGCAGATGTGCCTGCCTGAGAGGTGTGTGAGGAACCAGATGTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTATAGCAGATGTGCCTGCCTGAGAGGTGTGTGAGGAACCAGATGTGG  200

seq1  TGGTGACATCCTTAACCGACACATGTGAGGCAAGATTGTTTTTGTCAATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGACATCCTTAACCGACACATGTGAGGCAAGATTGTTTTTGTCAATT  250

seq1  TGAGGTCAGCCTGGGCAACCACTGAGTTCAAGGGTAGAATAGGCTAGAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGTCAGCCTGGGCAACCACTGAGTTCAAGGGTAGAATAGGCTAGAGT  300

seq1  GTGAAGTTCTGTCTCAAAAATGAAAAAGACACAGAAGGAAACCACAATTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAGTTCTGTCTCAAAAATGAAAAAGACACAGAAGGAAACCACAATTT  350

seq1  ATAGAGATTTGCAAAGTATGAAAGTGTAGCGTGAAATACTTTAAAAAGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAGATTTGCAAAGTATGAAAGTGTAGCGTGAAATACTTTAAAAAGCA  400

seq1  CCCATGCTATCGCCAGCAAGACAAAGGCAGACGGCTTGTTCTCATCTCGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATGCTATCGCCAGCAAGACAAAGGCAGACGGCTTGTTCTCATCTCGG  450

seq1  CAGACTTTCTGACCCAGAGCTCTGAAATCCCTCCACCTGGCTTGCTAAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACTTTCTGACCCAGAGCTCTGAAATCCCTCCACCTGGCTTGCTAAGT  500

seq1  TCCCATGGCGGATGGCTGCCATGCTCCCAAATTCCCATGGCCTTTTGGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCATGGCGGATGGCTGCCATGCTCCCAAATTCCCATGGCCTTTTGGGG  550

seq1  TGCACTTCTTGTAAACCCATGCTTTGCTGCCATACCTTTCTCTCTAGAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACTTCTTGTAAACCCATGCTTTGCTGCCATACCTTTCTCTCTAGAAC  600

seq1  CCAGCTGAGTTGCCCAGTGAAAACACCACCCAATCTTCGCTTAGAATGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCTGAGTTGCCCAGTGAAAACACCACCCAATCTTCGCTTAGAATGAA  650

seq1  AAGGCAAAACAATCGTAGGGCGCAGCAATCCTGCCATCCTAATGTATAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCAAAACAATCGTAGGGCGCAGCAATCCTGCCATCCTAATGTATAAG  700

seq1  CCAGTCGAAGTTGAATCCTCTGCTAGAAGATCCCAATGGATCTGCCACCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTCGAAGTTGAATCCTCTGCTAGAAGATCCCAATGGATCTGCCACCC  750

seq1  GACCTGGGGGCCTCCACTACCTACATTTTGGCCTCCATGCTCCTATCCGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTGGGGGCCTCCACTACCTACATTTTGGCCTCCATGCTCCTATCCGG  800

seq1  CAAGTCCCTCTCCTCTTCTCCTCTTCTGCCATCCTGACCCAGAAGTCCCG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTCCCTCTCCTCTTCTCCTCTTCTGCCATCCTGACCCAGAAGTCCCG  850

seq1  CCTACTCACCCAGTGATTGGTTCCTCAAAATCT-----------------  883
      |||||||||||||||||||||||||||||||||                 
seq2  CCTACTCACCCAGTGATTGGTTCCTCAAAATCTATATTTTGTTTTGTTTT  900

seq1  -TTTTTTTTTTTTT  896
       |||||||||||||
seq2  GTTTTTTTTTTTTT  914


seq1: chr9_116045590_116046650
seq2: B6Ng01-243L21.g_68_1128 (reverse)

seq1  CACCGC-AAGGATGTGCATCTAGATCAACAGCTAGGGACAAAGATACAAT  49
      |||||| |||||||||| ||||||||| |||||| |||||||||| ||| 
seq2  CACCGCAAAGGATGTGCGTCTAGATCATCAGCTA-GGACAAAGATTCAA-  48

seq1  TCTAAACAAACCCAAGAACTCTCTCCT-AGCCGGAGGG-GT-GAGCTAG-  95
      ||||| |||  || ||||||||||||| | |||||||| || ||||||| 
seq2  TCTAACCAA--CCCAGAACTCTCTCCTAACCCGGAGGGAGTGGAGCTAGA  96

seq1  TCAGTGCATCACTTGCCTTGCAAGCAGGAGATCCTGACTTCAGTCCCCAG  145
      ||||||||||||||||||||| |||| ||||  |||||||||||||||||
seq2  TCAGTGCATCACTTGCCTTGC-AGCAAGAGAATCTGACTTCAGTCCCCAG  145

seq1  ACTGTAGGCTTAAACCAGGAGTTTCCACTTCACCAG-CCCTTATGTAAAG  194
      |||||||||||||||||||||||||||||||||||| ||||||||| |||
seq2  ACTGTAGGCTTAAACCAGGAGTTTCCACTTCACCAGCCCCTTATGT-AAG  194

seq1  ACACAAAACAACTCCAACACCACCAAGACAACCTAACTGACTCTTCAACA  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAAAACAACTCCAACACCACCAAGACAACCTAACTGACTCTTCAACA  244

seq1  ACCTCAACCCAAAATTCAAAACGCTTTTCAGTTTGATAGCTTTGTTACAC  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCAACCCAAAATTCAAAACGCTTTTCAGTTTGATAGCTTTGTTACAC  294

seq1  ACCGTGTGTTTGCTTAAACAGTCTGCTATGAAGGCAACACATTTTAATTG  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGTGTGTTTGCTTAAACAGTCTGCTATGAAGGCAACACATTTTAATTG  344

seq1  CTACAGATCCTCCATTAGCGGCTGGCCATCCTTTGGGAATTTTATACCAG  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAGATCCTCCATTAGCGGCTGGCCATCCTTTGGGAATTTTATACCAG  394

seq1  TAGCAGGCAAATTAATTATTCGAAGTGTTCTCTGAAAAGAAGTTCCAGTA  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAGGCAAATTAATTATTCGAAGTGTTCTCTGAAAAGAAGTTCCAGTA  444

seq1  ATAGGAGGCTCTCTCACCTAGAAAGTCTCATGCTGTCCTATGAAAGGGAC  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGAGGCTCTCTCACCTAGAAAGTCTCATGCTGTCCTATGAAAGGGAC  494

seq1  AGCTGTCAGAGCATGTGACAGACTCATGAGACATAACACATTTCACTTCT  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGTCAGAGCATGTGACAGACTCATGAGACATAACACATTTCACTTCT  544

seq1  CTTCCACAAGCCCTTGAGTAATAGCAAAACCTTCACCCCGGCACAAAGGT  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCACAAGCCCTTGAGTAATAGCAAAACCTTCACCCCGGCACAAAGGT  594

seq1  TACTGCATCGTTCTCTCCCATTGCCCCAAACTCACTGCCGAAGGCTCTGA  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGCATCGTTCTCTCCCATTGCCCCAAACTCACTGCCGAAGGCTCTGA  644

seq1  GCTCTCACTGGGAAGGGAGGTGTTAATTTCTAGACAAGCACTGTTGTCTA  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTCACTGGGAAGGGAGGTGTTAATTTCTAGACAAGCACTGTTGTCTA  694

seq1  AGGATTGTGGGGGTAAGAAGGGCTCAGATTTTTAAATTGGGATTAGGACT  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATTGTGGGGGTAAGAAGGGCTCAGATTTTTAAATTGGGATTAGGACT  744

seq1  TCTTGGCCCATGTCTTTGAAACAGTGTTTACTGGTGGCTGGAAGGTTAGG  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGGCCCATGTCTTTGAAACAGTGTTTACTGGTGGCTGGAAGGTTAGG  794

seq1  GGAAAATTCATCAAGAATGCTTAACATTCTGCCAGCAGTGTCTTCATGTA  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAATTCATCAAGAATGCTTAACATTCTGCCAGCAGTGTCTTCATGTA  844

seq1  ACATTGAACTGTGTTCTCCTGATTATTGATTATTCTCGTGTATGTGAGGT  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTGAACTGTGTTCTCCTGATTATTGATTATTCTCGTGTATGTGAGGT  894

seq1  GGGGGCACAGCATGCCCTAGCATGGACACGGGATAACTTTGTAGAGTTGG  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGCACAGCATGCCCTAGCATGGACACGGGATAACTTTGTAGAGTTGG  944

seq1  TTTTCTCTTCCAGCTTTACTTGGGTCTCAGGGATCCAACTAGGTTCTTCA  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTCTTCCAGCTTTACTTGGGTCTCAGGGATCCAACTAGGTTCTTCA  994

seq1  GGACTGTGCAAAGAGGACTTATATCTGATGAGCGATTCACCAGCCCTACT  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTGTGCAAAGAGGACTTATATCTGATGAGCGATTCACCAGCCCTACT  1044

seq1  CATATACCTCTGAATTC  1061
      |||||||||||||||||
seq2  CATATACCTCTGAATTC  1061


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