BAC Information

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BAC

Clone NameB6Ng01-244G22
Chromosome9 (Build37)
Map Location 95,016,588 - 95,017,699
singlet/doubletsinglet
Overlap geneSlc9a9
Upstream geneLOC384967, EG384968, 1190002N15Rik, EG667601
Downstream geneChst2, LOC667088, 2610101N10Rik, LOC100040097, Paqr9, Pcolce2, Trpc1, AI427122, 1700065D16Rik, Xrn1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-244G22.bB6Ng01-244G22.g
ACCGA053569GA053570
length1,1621,102
definitionB6Ng01-244G22.b B6Ng01-244G22.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcactagaggatttactgctagcgctcctttctcttttgcccagaa
gcttctcccctccctggtgaggtgagagagaagcttggagcaattaactt
ttattgaaccaggaaaagaaagtcacactcatgagagaaaaacttttaca
caagcaaatatgcacagacacacacattcttacacacattcagacacaca
ttcacatttttgttgggcccaaccatctgtctcatcaacttaaatactta
gaactcttatacttaaaatgcatatgtagttttgatggatagagcagaag
cccctgtaagcaggtttcattgtgcaaacaccagagcagaaagaactcac
tcattctggatgaaaaataagctacaaccttcattgcttacagaaagaaa
aaaaaaaacttctatctttttattgagtataaaaatcaaaatcaaaaagc
aaaccaaaccaaacaaaaatctgtctttgtctgttgcaggaaatgttaaa
aaagacgattggcacgttcctgcactagtgcttgcccaccaactctctgc
ggctagcccctgtgccaggtgatctcagcccacaaactcctggccctgca
aggccacaaggctcctgctgggccatctcaaaaatgcccctctcccccga
cccccgccacccgaccccctcagtgagttccacttgcttccatgtaacgc
cccacgcacccctggttatccatctcaacacctaattacatgatagaaat
aagactcttaaacttatagttaaccaattagatttatatatcaatttaaa
cacaatttacaagatgccaatataataatttcaaagccaattgataatga
taaagctttaacccaattattctaaccttttaataacaccacaacagtct
ccattctggttctctctctcctcctgagacctctctgtctcttcaactcc
tcactctgcctcccttctctgtctatcacagccttcccactgccctatat
gatggacaggaaattctgtatactgtcagtagagaactggctgtagaaaa
caaacaaacacaacaaccaacaaaactctgttcaccgttaggtatagagc
ggtctgcgcctctgcctgaccgtccgacctgctctgctctgacctgcctc
gtctggtctcgt
gaattccagtcgtcttaggaactcttttgattcttttgagcccactactg
atgggctgcgaagtgaaggaggagaaaccattccctctcagacctgcagt
tgatggtacagtattaaaaaggagtctcagtaagagaagggtgactggat
attgaacacataaatatagcttgacaatggagcggtgtgagaggcatcgg
ctaatgcctgggtactcttatgtgggcttgagggtactaaatggggacta
cagtttggcactgtacctcaccgctccccacatccattgattaaatatca
ttggagtctatggatgattaaaattagtccaatttaataattaaaatatt
ttaacttgactttgggagacaagaaagtaaatcaaagttaagtagcagaa
gcaattatatatctctatctatatatctatctatccatctatctatctat
atgtgtgcatacacacacatatatatacatacatttcagttttattttca
gtatgactctgtagtaaagagtttgggccatggggtttcaaatctgatag
ctctcattgattgcatgtgcaatgtggaaagttttatttattagtatggt
gtacatgtgtttgtgtacatgttaaggtggtgatgaatgtgccacaacat
gcatgtagaggtcacaggacaattgtggaattgtcctcgatttgcaactt
aacatgggttcctagagtcagactcaggccaccaggcctgtgtgacaagt
atcttcatctgcacgctccctggtccctcaaacacttgttgtagcctctt
taaaccttaattttctcaactgtaaatggcagtaagcaggatccatttta
tgggccattacacatatttcccggttgtttttctgctgctttggtaagca
ctatggctaaaagcaatttggggaggaagggttagttgagtaacacttcc
aggttatcccttactgaagaaagcagagtgcactcagagcaggaatctag
aggaacactgcgtactggcctggattccatgacttgcttcagtcttctgt
aatcaaacacaggacctcttcccggttggcactccagatggggccaactc
tt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_95016588_95017699
seq2: B6Ng01-244G22.g_66_1167 (reverse)

seq1  AAGAGTTGGCCCACTCTGGGAAGTGCCAACCCGGGGAAGGAGGTCCTGTG  50
      ||||||||||||  |||||  ||||||||||  ||||| |||||||||||
seq2  AAGAGTTGGCCCCATCTGG--AGTGCCAACC--GGGAA-GAGGTCCTGTG  45

seq1  TTGTATAAAAAGGAAGACTG-AGCAAGCCATGGAGACCAAGCCAGTACGC  99
      ||  || | |  |||||||| |||||| ||||||  ||| ||||||||||
seq2  TTTGATTACA--GAAGACTGAAGCAAGTCATGGAATCCAGGCCAGTACGC  93

seq1  AGTGTTCCTCTAGGTTCCTGCTCTGAGTTGCAACTCTGGCTTTCCTCAGT  149
      ||||||||||||| ||||||||||||| ||| ||||| |||||| |||||
seq2  AGTGTTCCTCTAGATTCCTGCTCTGAG-TGC-ACTCT-GCTTTCTTCAGT  140

seq1  AAGGGATTAACCTGGAAGTGTAACTCAACTAAACCCTTTCCTCCCCAAAT  199
      |||||| |||||||||||||| ||||||||||  || |||||||||||||
seq2  AAGGGA-TAACCTGGAAGTGTTACTCAACTAA--CCCTTCCTCCCCAAAT  187

seq1  TGCTTTTAGCCATAGTGCTTACCAAAGCAGCAG-AAAACAACC-GGAAAT  247
      ||||||||||||||||||||||||||||||||| ||||||||| ||||||
seq2  TGCTTTTAGCCATAGTGCTTACCAAAGCAGCAGAAAAACAACCGGGAAAT  237

seq1  ATGTGTAATGGCCCATAAAATGGATCCTGCTTACTGCCATTTACAGTTGA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTAATGGCCCATAAAATGGATCCTGCTTACTGCCATTTACAGTTGA  287

seq1  GAAAATTAAGGTTTAAAGAGGCTACAACAAGTGTTTGAGGGACCAGGGAG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATTAAGGTTTAAAGAGGCTACAACAAGTGTTTGAGGGACCAGGGAG  337

seq1  CGTGCAGATGAAGATACTTGTCACACAGGCCTGGTGGCCTGAGTCTGACT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGCAGATGAAGATACTTGTCACACAGGCCTGGTGGCCTGAGTCTGACT  387

seq1  CTAGGAACCCATGTTAAGTTGCAAATCGAGGACAATTCCACAATTGTCCT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGAACCCATGTTAAGTTGCAAATCGAGGACAATTCCACAATTGTCCT  437

seq1  GTGACCTCTACATGCATGTTGTGGCACATTCATCACCACCTTAACATGTA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACCTCTACATGCATGTTGTGGCACATTCATCACCACCTTAACATGTA  487

seq1  CACAAACACATGTACACCATACTAATAAATAAAACTTTCCACATTGCACA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAACACATGTACACCATACTAATAAATAAAACTTTCCACATTGCACA  537

seq1  TGCAATCAATGAGAGCTATCAGATTTGAAACCCCATGGCCCAAACTCTTT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAATCAATGAGAGCTATCAGATTTGAAACCCCATGGCCCAAACTCTTT  587

seq1  ACTACAGAGTCATACTGAAAATAAAACTGAAATGTATGTATATATATGTG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACAGAGTCATACTGAAAATAAAACTGAAATGTATGTATATATATGTG  637

seq1  TGTGTATGCACACATATAGATAGATAGATGGATAGATAGATATATAGATA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTATGCACACATATAGATAGATAGATGGATAGATAGATATATAGATA  687

seq1  GAGATATATAATTGCTTCTGCTACTTAACTTTGATTTACTTTCTTGTCTC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATATATAATTGCTTCTGCTACTTAACTTTGATTTACTTTCTTGTCTC  737

seq1  CCAAAGTCAAGTTAAAATATTTTAATTATTAAATTGGACTAATTTTAATC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAGTCAAGTTAAAATATTTTAATTATTAAATTGGACTAATTTTAATC  787

seq1  ATCCATAGACTCCAATGATATTTAATCAATGGATGTGGGGAGCGGTGAGG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCATAGACTCCAATGATATTTAATCAATGGATGTGGGGAGCGGTGAGG  837

seq1  TACAGTGCCAAACTGTAGTCCCCATTTAGTACCCTCAAGCCCACATAAGA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGTGCCAAACTGTAGTCCCCATTTAGTACCCTCAAGCCCACATAAGA  887

seq1  GTACCCAGGCATTAGCCGATGCCTCTCACACCGCTCCATTGTCAAGCTAT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCCAGGCATTAGCCGATGCCTCTCACACCGCTCCATTGTCAAGCTAT  937

seq1  ATTTATGTGTTCAATATCCAGTCACCCTTCTCTTACTGAGACTCCTTTTT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATGTGTTCAATATCCAGTCACCCTTCTCTTACTGAGACTCCTTTTT  987

seq1  AATACTGTACCATCAACTGCAGGTCTGAGAGGGAATGGTTTCTCCTCCTT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACTGTACCATCAACTGCAGGTCTGAGAGGGAATGGTTTCTCCTCCTT  1037

seq1  CACTTCGCAGCCCATCAGTAGTGGGCTCAAAAGAATCAAAAGAGTTCCTA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTCGCAGCCCATCAGTAGTGGGCTCAAAAGAATCAAAAGAGTTCCTA  1087

seq1  AGACGACTGGAATTC  1112
      |||||||||||||||
seq2  AGACGACTGGAATTC  1102