BAC Information

Click to search

BAC

Clone NameB6Ng01-244J14
Chromosome9 (Build37)
Map Location 89,951,400 - 90,086,659
singlet/doubletdoublet
Overlap geneCtsh, Morf4l1, LOC621414, Adamts7
Upstream geneEG666747, LOC100039714, 4930579C12Rik, Bcl2a1b, Mthfs, AF529169, Tmed3, B230218L05Rik, Rasgrf1
Downstream geneTbc1d2b, LOC100039777, LOC100039925, EG434428
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-244J14.bB6Ng01-244J14.g
ACCGA053692GA053693
length1,1701,101
definitionB6Ng01-244J14.b B6Ng01-244J14.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(89,951,400 - 89,952,562)(90,085,555 - 90,086,659)
sequence
gaattctgtggctttcttcctcttgttggtttggaaaccaccaccaccac
caccacctgcaagaggcacaagttagctataaatcctgcctgctgagaaa
cctggtcctcagctgagatttgtcttctctgaaggcctcagccacacagc
aggcccttaacctgggtttggaatcccctgcacccccctcagaccttgtc
ttaaggaaatatgctcctctccctgcccctcccccttatggtcctgactt
agtttctggagcaagtctggagcttttagatagagatgtagctgtcacat
agcaatgaccttcatattgctgcgttggcacagacccctaggaatcccct
gggccaacatggaaccatcccaaatgatctggacgcagatggtgccagtg
aaaccagactagaccctttacttccaaactagccatctgaccagattaca
gatgcctgcaattcagcactcaaagggctaaagcataaagattgtgaatt
caaggctagcctgggctagttagccagatgctgttctaaacacacattca
gaagatacatttccacccaagttttacttctgtaggtttaacaatgactt
ttcatagagtaaaatgtatttggggaaaaaaatcaaggtcttcataataa
ttttgactattgcttaatctagaataattttataatgattaggaagcaaa
gatgattttaattgaacttttgtgttgcagaaaaggagatagggtaattt
aatataagtattctttcttaggctaaacttgtgtgagacagaaaggcagg
tgttcaaggagaagaaaatatataaaatattcaactctttttttttattt
attttttttattacatattttcctcaattacatttccaatgctatcccaa
aagtcccccataccctcccccccacttccctacccactcattccattttt
tttggccctggcgttcccctgtactggggcatatacagtttgcgtgtcca
atgggcctctctttttcagtgatgcgactaggccattctttttgaataaa
tatgcagctagagtcagagcttccgggttactgattagttcattaattgt
ggttccaccctataagggtggcaggatcgtttaagcctctaggtacgttc
tcttagctcctccaattggg
gaattcagcctgggcccggcaccagaatgccccaagagacatacacacaa
cctctctgcagagacctcacaaaacagggttccactgcctctgtcagggt
gaaggcaggcctccatagcctcctctgtcctcccagccttccctccgtga
caccctatactgtaggtggcccaccttgctgcttcttagtggtggcttag
gcctttcggctctgtaaaatggaaatgaataacaagacccacttcaaagc
cccatggtagccatcacatgtgatatgacatgagcaagctcagcaaaggg
gttccacaagtgtggtctcacctgtgccacaagtgaccgtgcacttgctc
cagggcccataatgccaggagaactcaggtggtcggacttgatcatggct
gtccctctggatggtatactggtagtgtaccccagggttcttctcctgga
acagcagctgggacaggcaaatgggggccagtgagcacaagggctcttct
ctatctgctcagaacctgcccctagggtcatctccagccatctctgtgaa
ctaagctgtactggagacctactctagagaggagaaaactgagaccgaga
ctcagagaccccagcagctgagcatagctcagaatcagatcctacagagc
cctaaggtttcccccttgatatcctaccttggggaccaccccatttattc
ctcccatcctggcccctagaggcaggcacctggatccagacaggctcact
ggtggggcctggggatgtgagattctcccagttgcccttccgtgcatagg
tgaaggtagtgcctgccactcggtagtctccattccactggatggtccag
cctccattgaggaagtacttatctgggtcctcactccgcagggccaggaa
gttggcagcctcagccacctcctcatagatctctctggctcggctgggat
cagccctatatccacataccctggtgggcaggatggtacagtttgtcccc
ggtttatcagtcaggtggcccccccactcctgcactgccttctgcttgct
gagccacggactccacaccaatcagtccattaattctgagtcccctcccc
c
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_89951400_89952562
seq2: B6Ng01-244J14.b_43_1212

seq1  GAATTCTGTGGCTTTCTTCCTCTTGTTGGTTTGGAAACCACCACCACCAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTGGCTTTCTTCCTCTTGTTGGTTTGGAAACCACCACCACCAC  50

seq1  CACCACCTGCAAGAGGCACAAGTTAGCTATAAATCCTGCCTGCTGAGAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCACCTGCAAGAGGCACAAGTTAGCTATAAATCCTGCCTGCTGAGAAA  100

seq1  CCTGGTCCTCAGCTGAGATTTGTCTTCTCTGAAGGCCTCAGCCACACAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGTCCTCAGCTGAGATTTGTCTTCTCTGAAGGCCTCAGCCACACAGC  150

seq1  AGGCCCTTAACCTGGGTTTGGAATCCCCTGCACCCCCCTCAGACCTTGTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCCTTAACCTGGGTTTGGAATCCCCTGCACCCCCCTCAGACCTTGTC  200

seq1  TTAAGGAAATATGCTCCTCTCCCTGCCCCTCCCCCTTATGGTCCTGACTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGGAAATATGCTCCTCTCCCTGCCCCTCCCCCTTATGGTCCTGACTT  250

seq1  AGTTTCTGGAGCAAGTCTGGAGCTTTTAGATAGAGATGTAGCTGTCACAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTCTGGAGCAAGTCTGGAGCTTTTAGATAGAGATGTAGCTGTCACAT  300

seq1  AGCAATGACCTTCATATTGCTGCGTTGGCACAGACCCCTAGGAATCCCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAATGACCTTCATATTGCTGCGTTGGCACAGACCCCTAGGAATCCCCT  350

seq1  GGGCCAACATGGAACCATCCCAAATGATCTGGACGCAGATGGTGCCAGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCAACATGGAACCATCCCAAATGATCTGGACGCAGATGGTGCCAGTG  400

seq1  AAACCAGACTAGACCCTTTACTTCCAAACTAGCCATCTGACCAGATTACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCAGACTAGACCCTTTACTTCCAAACTAGCCATCTGACCAGATTACA  450

seq1  GATGCCTGCAATTCAGCACTCAAAGGGCTAAAGCATAAAGATTGTGAATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCCTGCAATTCAGCACTCAAAGGGCTAAAGCATAAAGATTGTGAATT  500

seq1  CAAGGCTAGCCTGGGCTAGTTAGCCAGATGCTGTTCTAAACACACATTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGCTAGCCTGGGCTAGTTAGCCAGATGCTGTTCTAAACACACATTCA  550

seq1  GAAGATACATTTCCACCCAAGTTTTACTTCTGTAGGTTTAACAATGACTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGATACATTTCCACCCAAGTTTTACTTCTGTAGGTTTAACAATGACTT  600

seq1  TTCATAGAGTAAAATGTATTTGGGGAAAAAAATCAAGGTCTTCATAATAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATAGAGTAAAATGTATTTGGGGAAAAAAATCAAGGTCTTCATAATAA  650

seq1  TTTTGACTATTGCTTAATCTAGAATAATTTTATAATGATTAGGAAGCAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGACTATTGCTTAATCTAGAATAATTTTATAATGATTAGGAAGCAAA  700

seq1  GATGATTTTAATTGAACTTTTGTGTTGCAGAAAAGGAGATAGGGTAATTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGATTTTAATTGAACTTTTGTGTTGCAGAAAAGGAGATAGGGTAATTT  750

seq1  AATATAAGTATTCTTTCTTAGGCTAAACTTGTGTGAGACAGAAAGGCAGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATAAGTATTCTTTCTTAGGCTAAACTTGTGTGAGACAGAAAGGCAGG  800

seq1  TGTTCAAGGAGAAGAAAATATATAAAATATTCAACTCTTTTTTTTAATTT  850
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TGTTCAAGGAGAAGAAAATATATAAAATATTCAACTCTTTTTTTTTATTT  850

seq1  ATTTTTTTTATTACATATTTTCCTCAATTACATTTCCAATGCTATCCCAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTTTTATTACATATTTTCCTCAATTACATTTCCAATGCTATCCCAA  900

seq1  AAGTCCCCCATACCCTCCCCCCCACTTCCCTACCCACTCATTCCCATTTT  950
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  AAGTCCCCCATACCCTCCCCCCCACTTCCCTACCCACTCATT-CCATTTT  949

seq1  TTTTGGCCCTGGCGTTCCCCTGTACTGGGGCATATACAGTTTGCGTGTCC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGGCCCTGGCGTTCCCCTGTACTGGGGCATATACAGTTTGCGTGTCC  999

seq1  AATGGGCCTCTC-TTTCCAGTGATGGCCGACTAGGCCA-TCTTTT--GAT  1046
      |||||||||||| ||| ||||||||  ||||||||||| ||||||   ||
seq2  AATGGGCCTCTCTTTTTCAGTGATG--CGACTAGGCCATTCTTTTTGAAT  1047

seq1  ACATATGCAGCTAGAGTCAAGAGC-TCCGGGGTACTGGTTAGTTCAT--A  1093
      | |||||||||||||||| ||||| |||||| ||||| |||||||||  |
seq2  AAATATGCAGCTAGAGTC-AGAGCTTCCGGGTTACTGATTAGTTCATTAA  1096

seq1  ATGTTGTTCCA-CCTAT-AGGGTTGCA-GATCCCTTTAGCTCCTTGGGTA  1140
       ||| |||||| ||||| ||||| ||| ||||  || ||| |  | ||||
seq2  TTGTGGTTCCACCCTATAAGGGTGGCAGGATCGTTTAAGC-CTCTAGGTA  1145

seq1  CTTTCTC-TAGCTCCTCC-ATTGGG  1163
      | ||||| |||||||||| ||||||
seq2  CGTTCTCTTAGCTCCTCCAATTGGG  1170

seq1: chr9_90085555_90086659
seq2: B6Ng01-244J14.g_66_1166 (reverse)

seq1  GGGGGAGGGGACTCAGAA-TAATGAACTGA-TGGTGTGGAGTCGTTGGCT  48
      |||||||||||||||||| ||||| ||||| ||||||||||||  |||| 
seq2  GGGGGAGGGGACTCAGAATTAATGGACTGATTGGTGTGGAGTCCGTGGC-  49

seq1  TCAGC-AGCAGAAGCAAGTGCAGGAAGGTGGGGGGCAACTGACTGATTAA  97
      ||||| ||||||||  |||||||||  | ||||| || |||||||||  |
seq2  TCAGCAAGCAGAAGGCAGTGCAGGAGTGGGGGGGCCACCTGACTGAT--A  97

seq1  ACCCGGGGACCAAACTGTACCATCCTGCCCA-CAGGGTATGTGGATATAG  146
      | ||||||| ||||||||||||||||||||| ||||||||||||||||||
seq2  AACCGGGGA-CAAACTGTACCATCCTGCCCACCAGGGTATGTGGATATAG  146

seq1  GGCTGATCCCAGCCGGAGCCAGAGAGATTCTTATTGAGGAGGTGGCTGAG  196
      |||||||||||||| |||||||||||| |||   ||||||||||||||||
seq2  GGCTGATCCCAGCC-GAGCCAGAGAGA-TCT--ATGAGGAGGTGGCTGAG  192

seq1  GCTGCCAACTTCCTGGCCCTGCGGAGTGAGGACCCAGATAAGTACTTCCT  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCCAACTTCCTGGCCCTGCGGAGTGAGGACCCAGATAAGTACTTCCT  242

seq1  CAATGGAGGCTGGACCATCCAGTGGAATGGAGACTACCGAGTGGCAGGCA  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGGAGGCTGGACCATCCAGTGGAATGGAGACTACCGAGTGGCAGGCA  292

seq1  CTACCTTCACCTATGCACGGAAGGGCAACTGGGAGAATCTCACATCCCCA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCTTCACCTATGCACGGAAGGGCAACTGGGAGAATCTCACATCCCCA  342

seq1  GGCCCCACCAGTGAGCCTGTCTGGATCCAGGTGCCTGCCTCTAGGGGCCA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCCACCAGTGAGCCTGTCTGGATCCAGGTGCCTGCCTCTAGGGGCCA  392

seq1  GGATGGGAGGAATAAATGGGGTGGTCCCCAAGGTAGGATATCAAGGGGGA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGGGAGGAATAAATGGGGTGGTCCCCAAGGTAGGATATCAAGGGGGA  442

seq1  AACCTTAGGGCTCTGTAGGATCTGATTCTGAGCTATGCTCAGCTGCTGGG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTTAGGGCTCTGTAGGATCTGATTCTGAGCTATGCTCAGCTGCTGGG  492

seq1  GTCTCTGAGTCTCGGTCTCAGTTTTCTCCTCTCTAGAGTAGGTCTCCAGT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCTGAGTCTCGGTCTCAGTTTTCTCCTCTCTAGAGTAGGTCTCCAGT  542

seq1  ACAGCTTAGTTCACAGAGATGGCTGGAGATGACCCTAGGGGCAGGTTCTG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCTTAGTTCACAGAGATGGCTGGAGATGACCCTAGGGGCAGGTTCTG  592

seq1  AGCAGATAGAGAAGAGCCCTTGTGCTCACTGGCCCCCATTTGCCTGTCCC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGATAGAGAAGAGCCCTTGTGCTCACTGGCCCCCATTTGCCTGTCCC  642

seq1  AGCTGCTGTTCCAGGAGAAGAACCCTGGGGTACACTACCAGTATACCATC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGCTGTTCCAGGAGAAGAACCCTGGGGTACACTACCAGTATACCATC  692

seq1  CAGAGGGACAGCCATGATCAAGTCCGACCACCTGAGTTCTCCTGGCATTA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGGACAGCCATGATCAAGTCCGACCACCTGAGTTCTCCTGGCATTA  742

seq1  TGGGCCCTGGAGCAAGTGCACGGTCACTTGTGGCACAGGTGAGACCACAC  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCCCTGGAGCAAGTGCACGGTCACTTGTGGCACAGGTGAGACCACAC  792

seq1  TTGTGGAACCCCTTTGCTGAGCTTGCTCATGTCATATCACATGTGATGGC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGGAACCCCTTTGCTGAGCTTGCTCATGTCATATCACATGTGATGGC  842

seq1  TACCATGGGGCTTTGAAGTGGGTCTTGTTATTCATTTCCATTTTACAGAG  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCATGGGGCTTTGAAGTGGGTCTTGTTATTCATTTCCATTTTACAGAG  892

seq1  CCGAAAGGCCTAAGCCACCACTAAGAAGCAGCAAGGTGGGCCACCTACAG  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGAAAGGCCTAAGCCACCACTAAGAAGCAGCAAGGTGGGCCACCTACAG  942

seq1  TATAGGGTGTCACGGAGGGAAGGCTGGGAGGACAGAGGAGGCTATGGAGG  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGGGTGTCACGGAGGGAAGGCTGGGAGGACAGAGGAGGCTATGGAGG  992

seq1  CCTGCCTTCACCCTGACAGAGGCAGTGGAACCCTGTTTTGTGAGGTCTCT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCCTTCACCCTGACAGAGGCAGTGGAACCCTGTTTTGTGAGGTCTCT  1042

seq1  GCAGAGAGGTTGTGTGTATGTCTCTTGGGGCATTCTGGTGCCGGGCCCAG  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGAGGTTGTGTGTATGTCTCTTGGGGCATTCTGGTGCCGGGCCCAG  1092

seq1  GCTGAATTC  1105
      |||||||||
seq2  GCTGAATTC  1101