BAC Information

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BAC

Clone NameB6Ng01-245G24
Chromosome9 (Build37)
Map Location 51,521,522 - 51,711,732
singlet/doubletdoublet
Overlap geneArhgap20
Upstream geneDixdc1, 2310030G06Rik, Hspb2, Cryab, 1110032A03Rik, D630004A14Rik, Alg9, Ppp2r1b, Snf1lk2, Layn, 4833427G06Rik, Btg4, LOC100042825, Pou2af1, Gm684, 1810046K07Rik, LOC100042854, LOC640374, LOC668070
Downstream geneLOC629554, LOC100043409, Fdx1, EG629557, Rdx, 9830163H01Rik, Zc3h12c, LOC100042876, AI593442, Gm1715
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-245G24.bB6Ng01-245G24.g
ACCGA054321GA054322
length1,1781,149
definitionB6Ng01-245G24.b B6Ng01-245G24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(51,521,522 - 51,522,692)(51,710,598 - 51,711,732)
sequence
gaattccaaggcacacagcagaagatccaggttggatgggtcggtattaa
ctgttgagaagacctgtggggctttcttttttccagcacttgacactgaa
gactcctctgtccactccagtctactggaagggaagcttatgtctaccca
gagcctgggactcctatcctagactgtgcctcagctatttggaagctgga
attcctttatagataacctcaatcctatttctaggaccaaagcagctcac
ttgtgtccacccttctctcagaagattagattatatctccaagatagcca
agaagtagtccctagtgaggtgtggacaggtgaacaggcttgcacatgaa
gatgtcaactgaccgcctctgaagatgctttcctgacatgaggcacaagg
gggcacagtacaggctgatggtatctccaagttgccatgttccacagctc
ccccctccccctgcactccaagatgtacactaaaatcccaagttattttt
gaacagtttttttttctgaaagggagataggacatattttacttaatgtt
tggttatcctgatttctaactttcaaactgggacagaaataagaaactag
acttcatttatacccctgccttggacaccagtaatgttgagtatgagtca
tgacaataataagtaaatataattgaaggaaaagggagataaaaatttat
aaaagactattaaatgaaaagatcttcccctccaaaaccacataaacatg
tactgtgggatgagacaggatctcggagcccgcccaagagccacggcaca
aaataaatgtttactaaactcttgtcgatgaatttaatgaagaaacaaac
atgctcactgctgttcgtgtccataaatagcactgtgtattatgacaata
gcttgagagatgcaggcagctcagcatggtcagccacatttcccaactct
atccctgcaaggtcttgcctacaggcttgttgtcatcccaaggtcacact
ggttctgtgcatccctccctgcttaatatctcagcagtggttttcttgac
cagtccctttctcgtcctgcttacctattagaagtcaacacaggcacctc
tttccttggccaagccccgtttctgtggcaacaccactacttcaccctgt
cattacaatggtgctgtgtaatccttcc
gaattcaacatcctctttgctgttatggccagaattaaaacagttctttt
taacagtatgaacagctgtgcaaaccctgagttcgtctacaaactgctta
aataagttatgcacgtcagcactcccaagacaagctctatggcagtctat
atatgcctattttatgatgtgagtaaaagagacactgtttaacacgcaca
tgtgcgtgcgtccatgcctgtgtgtctgtgcgcatgcatgcatctgaggg
aggtggcaaggtttgctcaccccttccagcttttctgagaggtgagtgga
agtggaagtcaccattactcaacgcccctgaagaatatagtggatgctag
tgtattctgagagccaggtgtctgagagtcagaggagaagtcttgtcagc
aggcatctcaagagtgaacatgtgtttctgtgtgtgtctatgctgtgaaa
acacaagttgagacacatgcctgggatgtgtgatttcccaagttgccatg
taaattatgaagttaagaaatgtcatctcctggactgataagatggctca
gtggttaaaggtggtgccggcaagaccatgaacttgagtttcatcctgag
actcacagagttgaagaagacaactgaatttttgcaagttgtcttctagc
ttccatagtacacctgcactcccacacacccttggccacccaggtaatta
taaataaacaaaacaaaacgttttaaagaaatgttgccaggccctgtgta
gctcttgtggtacagagtgacatggttcctgctcctgggagagtgcccca
gtatgagcctccatgagtgccgatggctgctgtggacgtaaggcttgttt
gtgtaataacatacatattttctcactccaaggaatgtcctctctattaa
tgttaatgactccatgataaaaagacagcaggtccaggagatgaaaggta
tggctaatgtctcagcaagatggtaaatgctgggacctttaggacagccc
tttgaggctatgggaaagactcttagatgcatgagatcaaattatattac
ttctccagcctagggaaaaattaaagatgccaataatgaataatgaggga
gtttcatgaatctctaaaggaacaacagccaagccttacactatgaggc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_51521522_51522692
seq2: B6Ng01-245G24.b_44_1221

seq1  GAATTCCAAGGCACACAGCAGAAGATCCAGGTTGGATGGGTCGGTATTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAGGCACACAGCAGAAGATCCAGGTTGGATGGGTCGGTATTAA  50

seq1  CTGTTGAGAAGACCTGTGGGGCTTTCTTTTTTCCAGCACTTGACACTGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTGAGAAGACCTGTGGGGCTTTCTTTTTTCCAGCACTTGACACTGAA  100

seq1  GACTCCTCTGTCCACTCCAGTCTACTGGAAGGGAAGCTTATGTCTACCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCCTCTGTCCACTCCAGTCTACTGGAAGGGAAGCTTATGTCTACCCA  150

seq1  GAGCCTGGGACTCCTATCCTAGACTGTGCCTCAGCTATTTGGAAGCTGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCTGGGACTCCTATCCTAGACTGTGCCTCAGCTATTTGGAAGCTGGA  200

seq1  ATTCCTTTATAGATAACCTCAATCCTATTTCTAGGACCAAAGCAGCTCAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCTTTATAGATAACCTCAATCCTATTTCTAGGACCAAAGCAGCTCAC  250

seq1  TTGTGTCCACCCTTCTCTCAGAAGATTAGATTATATCTCCAAGATAGCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTCCACCCTTCTCTCAGAAGATTAGATTATATCTCCAAGATAGCCA  300

seq1  AGAAGTAGTCCCTAGTGAGGTGTGGACAGGTGAACAGGCTTGCACATGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGTAGTCCCTAGTGAGGTGTGGACAGGTGAACAGGCTTGCACATGAA  350

seq1  GATGTCAACTGACCGCCTCTGAAGATGCTTTCCTGACATGAGGCACAAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTCAACTGACCGCCTCTGAAGATGCTTTCCTGACATGAGGCACAAGG  400

seq1  GGGCACAGTACAGGCTGATGGTATCTCCAAGTTGCCATGTTCCACAGCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCACAGTACAGGCTGATGGTATCTCCAAGTTGCCATGTTCCACAGCTC  450

seq1  CCCCCTCCCCCTGCACTCCAAGATGTACACTAAAATCCCAAGTTATTTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCTCCCCCTGCACTCCAAGATGTACACTAAAATCCCAAGTTATTTTT  500

seq1  GAACAGTTTTTTTTTCTGAAAGGGAGATAGGACATATTTTACTTAATGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAGTTTTTTTTTCTGAAAGGGAGATAGGACATATTTTACTTAATGTT  550

seq1  TGGTTATCCTGATTTCTAACTTTCAAACTGGGACAGAAATAAGAAACTAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTATCCTGATTTCTAACTTTCAAACTGGGACAGAAATAAGAAACTAG  600

seq1  ACTTCATTTATACCCCTGCCTTGGACACCAGTAATGTTGAGTATGAGTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCATTTATACCCCTGCCTTGGACACCAGTAATGTTGAGTATGAGTCA  650

seq1  TGACAATAATAAGTAAATATAATTGAAGGAAAAGGGAGATAAAAATTTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAATAATAAGTAAATATAATTGAAGGAAAAGGGAGATAAAAATTTAT  700

seq1  AAAAGACTATTAAATGAAAAGATCTTCCCCTCCAAAACCACATAAACATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGACTATTAAATGAAAAGATCTTCCCCTCCAAAACCACATAAACATG  750

seq1  TACTGTGGGATGAGACAGGATCTCGGAGCCCGCCCAAGAGCCACGGCACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGTGGGATGAGACAGGATCTCGGAGCCCGCCCAAGAGCCACGGCACA  800

seq1  AAATAAATGTTTACTAAACTCTTGTCGATGAA-TTAATGAAG-AACAAAC  848
      |||||||||||||||||||||||||||||||| ||||||||| |||||||
seq2  AAATAAATGTTTACTAAACTCTTGTCGATGAATTTAATGAAGAAACAAAC  850

seq1  ATGCTCACTGCTGTTCGTGTCCATAAATAGCACTGTGTA-TATGAC-ATA  896
      ||||||||||||||||||||||||||||||||||||||| |||||| |||
seq2  ATGCTCACTGCTGTTCGTGTCCATAAATAGCACTGTGTATTATGACAATA  900

seq1  GCTTGAGAGATGCAGGCAGCTCAGCATGGTCAGCCACA-TTCCCAACTCT  945
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  GCTTGAGAGATGCAGGCAGCTCAGCATGGTCAGCCACATTTCCCAACTCT  950

seq1  AT-CCTGC-AGGTC-TGCCTACAGGCTTGTTGTCATCCC-AGGTCACACT  991
      || ||||| ||||| |||||||||||||||||||||||| ||||||||||
seq2  ATCCCTGCAAGGTCTTGCCTACAGGCTTGTTGTCATCCCAAGGTCACACT  1000

seq1  GGTTCTGTGCATCCCTCCCTGCTTAATATCTCAGCAGTG--TTTC-TGAC  1038
      |||||||||||||||||||||||||||||||||||||||  |||| ||||
seq2  GGTTCTGTGCATCCCTCCCTGCTTAATATCTCAGCAGTGGTTTTCTTGAC  1050

seq1  CAGTCCCTTTCTTCCTTCTGCTAACCTAATAGGAGCCAACACCAGGCACT  1088
      ||||||||||| || | ||||| ||||| ||| || ||||| ||||||| 
seq2  CAGTCCCTTTC-TCGTCCTGCTTACCTATTAGAAGTCAACA-CAGGCACC  1098

seq1  CCTTTCCCTTGGCAAGCCCCCGTTCCTGTGGCAACCACCACCTTACCTCA  1138
       |||| ||||||| |  ||||||| ||||||||| ||||||  ||| |||
seq2  TCTTT-CCTTGGCCAAGCCCCGTTTCTGTGGCAA-CACCAC--TACTTCA  1144

seq1  CCCCTGCATTACGATGGTGCTGTG-GATCCTTCC  1171
      |||   |||||| |||||||||||  ||||||||
seq2  CCCTGTCATTACAATGGTGCTGTGTAATCCTTCC  1178

seq1: chr9_51710598_51711732
seq2: B6Ng01-245G24.g_66_1214 (reverse)

seq1  GCCTCATAGTGTA--GCT--GCTGTTGTTCCTTT--AGATTCATGAAACT  44
      |||||||||||||  |||  ||||||||||||||  ||||||||||||||
seq2  GCCTCATAGTGTAAGGCTTGGCTGTTGTTCCTTTAGAGATTCATGAAACT  50

seq1  -CCTCATAATTCA-TATT-GCATCTTT-ATATTTTCCTA-GCT-GAGAAG  88
       |||||| ||||| |||| |||||||| || ||| |||| ||| ||||||
seq2  CCCTCATTATTCATTATTGGCATCTTTAATTTTTCCCTAGGCTGGAGAAG  100

seq1  TTATATATTTTGATCTCATGCATCT-AGAGTTCTTTCCCATAGCCTC-AA  136
      | ||||| ||||||||||||||||| |||| |||||||||||||||| ||
seq2  TAATATAATTTGATCTCATGCATCTAAGAG-TCTTTCCCATAGCCTCAAA  149

seq1  GGGCTGTCCTAAAGGTCCCAGCATTTACCATCTTGCTGAGACATTAGCCA  186
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTGTCCTAAAGGTCCCAGCATTTACCATCTTGCTGAGACATTAGCCA  199

seq1  TACC-TTCATCTCCTGGACCTGCTGTCTTTTTATCATGGAGTCATTAACA  235
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTTTCATCTCCTGGACCTGCTGTCTTTTTATCATGGAGTCATTAACA  249

seq1  TTAATAGAGAGGACATTCCTTGGAGTGAGAAAATATGTATGTTATTACAC  285
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATAGAGAGGACATTCCTTGGAGTGAGAAAATATGTATGTTATTACAC  299

seq1  AAACAAGCCTTACGTCCACAGCAGCCATCGGCACTCATGGAGGCTCATAC  335
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAGCCTTACGTCCACAGCAGCCATCGGCACTCATGGAGGCTCATAC  349

seq1  TGGGGCACTCTCCCAGGAGCAGGAACCATGTCACTCTGTACCACAAGAGC  385
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGCACTCTCCCAGGAGCAGGAACCATGTCACTCTGTACCACAAGAGC  399

seq1  TACACAGGGCCTGGCAACATTTCTTTAAAACGTTTTGTTTTGTTTATTTA  435
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACAGGGCCTGGCAACATTTCTTTAAAACGTTTTGTTTTGTTTATTTA  449

seq1  TAATTACCTGGGTGGCCAAGGGTGTGTGGGAGTGCAGGTGTACTATGGAA  485
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTACCTGGGTGGCCAAGGGTGTGTGGGAGTGCAGGTGTACTATGGAA  499

seq1  GCTAGAAGACAACTTGCAAAAATTCAGTTGTCTTCTTCAACTCTGTGAGT  535
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGAAGACAACTTGCAAAAATTCAGTTGTCTTCTTCAACTCTGTGAGT  549

seq1  CTCAGGATGAAACTCAAGTTCATGGTCTTGCCGGCACCACCTTTAACCAC  585
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGGATGAAACTCAAGTTCATGGTCTTGCCGGCACCACCTTTAACCAC  599

seq1  TGAGCCATCTTATCAGTCCAGGAGATGACATTTCTTAACTTCATAATTTA  635
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCCATCTTATCAGTCCAGGAGATGACATTTCTTAACTTCATAATTTA  649

seq1  CATGGCAACTTGGGAAATCACACATCCCAGGCATGTGTCTCAACTTGTGT  685
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGCAACTTGGGAAATCACACATCCCAGGCATGTGTCTCAACTTGTGT  699

seq1  TTTCACAGCATAGACACACACAGAAACACATGTTCACTCTTGAGATGCCT  735
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCACAGCATAGACACACACAGAAACACATGTTCACTCTTGAGATGCCT  749

seq1  GCTGACAAGACTTCTCCTCTGACTCTCAGACACCTGGCTCTCAGAATACA  785
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGACAAGACTTCTCCTCTGACTCTCAGACACCTGGCTCTCAGAATACA  799

seq1  CTAGCATCCACTATATTCTTCAGGGGCGTTGAGTAATGGTGACTTCCACT  835
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCATCCACTATATTCTTCAGGGGCGTTGAGTAATGGTGACTTCCACT  849

seq1  TCCACTCACCTCTCAGAAAAGCTGGAAGGGGTGAGCAAACCTTGCCACCT  885
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACTCACCTCTCAGAAAAGCTGGAAGGGGTGAGCAAACCTTGCCACCT  899

seq1  CCCTCAGATGCATGCATGCGCACAGACACACAGGCATGGACGCACGCACA  935
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCAGATGCATGCATGCGCACAGACACACAGGCATGGACGCACGCACA  949

seq1  TGTGCGTGTTAAACAGTGTCTCTTTTACTCACATCATAAAATAGGCATAT  985
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCGTGTTAAACAGTGTCTCTTTTACTCACATCATAAAATAGGCATAT  999

seq1  ATAGACTGCCATAGAGCTTGTCTTGGGAGTGCTGACGTGCATAACTTATT  1035
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGACTGCCATAGAGCTTGTCTTGGGAGTGCTGACGTGCATAACTTATT  1049

seq1  TAAGCAGTTTGTAGACGAACTCAGGGTTTGCACAGCTGTTCATACTGTTA  1085
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCAGTTTGTAGACGAACTCAGGGTTTGCACAGCTGTTCATACTGTTA  1099

seq1  AAAAGAACTGTTTTAATTCTGGCCATAACAGCAAAGAGGATGTTGAATTC  1135
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAACTGTTTTAATTCTGGCCATAACAGCAAAGAGGATGTTGAATTC  1149