BAC Information

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BAC

Clone NameB6Ng01-245H20
Chromosome9 (Build37)
Map Location 70,110,286 - 70,268,497
singlet/doubletdoublet
Overlap geneMyo1e, Ccnb2
Upstream geneRora, Narg2, EG665815, EG244913, Anxa2, Foxb1, Bnip2, LOC624164, Gtf2a2, Gcnt3, 6430514L14Rik
Downstream geneRnf111, Sltm, B230380D07Rik, Adam10, Cycs-ps1, Lipc, LOC100041622, LOC100041628, Aqp9, 1700020I22Rik, LOC100041660, Aldh1a2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-245H20.bB6Ng01-245H20.g
ACCGA054357GA054358
length5341,057
definitionB6Ng01-245H20.b B6Ng01-245H20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(70,110,286 - 70,110,825)(70,267,431 - 70,268,497)
sequence
ttttaaaaatgtcaacaatcataaaagacaaaggaaagctgttacaaatg
aaaggagatgaaagaggtctgacaatgaaatgtaacgcattactaatccg
gaactaggggcagaaagaccgctgggagagacaccattagtaccattagt
gtctctggagaggcacaaaagaaattgcatctgtgtttcttcctgacctt
ctgttataagaaagcaccctatttaggagggtatatattgtaggtaagga
tcaggggtcataatgtgtccgtcctctttttatatttttgagctgggagc
ttagcctttaaaggttaagtcatctctttgagccccagtccccttcctaa
atgcttctggaggaatcctggcagagagtgggaagaagaaagcagggttg
caaatggatggagtgtaaggagtttttaatgtatttttttgtaacttttt
gtagctaaaaattgtatcaaaacaaaacccctatatcttctttatcctgc
ctttaaaaaccaacaaggagggaaaaggagggag
gaattcaggggtacccctcattaccaggctttaactcataagaaattgaa
ctttcaaactcattttgaatttagccgtgggaagctagcagtaaagaccg
aacagcttagatttggggatcagaatcctaaacaatgaggaacatacagt
cagggttcatgtcttgtagctctaactgccactaacaagttaatttttgt
ctaatttgttctttcaaattatttaacagttaaagtcttgtgtagggatg
gggtacagtttatctggtctatcctacacaggtcatcttaaaaaaaaaca
aaaaaaccccaacctttggagaggtttttttgtttgttttgtaggattag
ttccccccctcccccaacactcagaaagttaaatatttttttctcatgga
atacttgttattgtaccacactgtaaactttggggtatgaatagcaagcc
ttgtttcttaactgtattcaagatgaaggcaattaatttcaagtaacact
attttttttttttttcgttttcattcaagtctgactctcccaatacttga
gaggtaaaatgacttccccatcctgttgtcattgggaatgtccttaattt
gagtctatgctataggaagctgtttctgaagggctttccttggaagtgct
atttcttattctttggttggcgttataacccaagctggtgtgaagtctga
aacatggagttttaaacagctgggctatcattaactattggtatcaaagc
tctttatcattgcagctatactgtgtgaatggaagtttctaagagaaccg
acagggatctcttaacagcagacgcaggttacttataagaagtaatcatt
taggtgggaggctttgggtgtcgcttgaaaactgcttgaatatgcaaaac
aatttataagatcagtaaaaaagattctttgtttttattggttaaggcag
tgggtgtttgcctaatggagagtgatatttcaaatagcattttagatttc
tttaatgtacttcccataaaaaatataaattaagacaaacaacttactct
gcaagtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_70110286_70110825
seq2: B6Ng01-245H20.b_46_585

seq1  GAATTCTTTTAAAAATGTCAACAATCATAAAAGACAAAGGAAAGCTGTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTAAAAATGTCAACAATCATAAAAGACAAAGGAAAGCTGTTA  50

seq1  CAAATGAAAGGAGATGAAAGAGGTCTGACAATGAAATGTAACGCATTACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGAAAGGAGATGAAAGAGGTCTGACAATGAAATGTAACGCATTACT  100

seq1  AATCCGGAACTAGGGGCAGAAAGACCGCTGGGAGAGACACCATTAGTACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCGGAACTAGGGGCAGAAAGACCGCTGGGAGAGACACCATTAGTACC  150

seq1  ATTAGTGTCTCTGGAGAGGCACAAAAGAAATTGCATCTGTGTTTCTTCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGTGTCTCTGGAGAGGCACAAAAGAAATTGCATCTGTGTTTCTTCCT  200

seq1  GACCTTCTGTTATAAGAAAGCACCCTATTTAGGAGGGTATATATTGTAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTTCTGTTATAAGAAAGCACCCTATTTAGGAGGGTATATATTGTAGG  250

seq1  TAAGGATCAGGGGTCATAATGTGTCCGTCCTCTTTTTATATTTTTGAGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGATCAGGGGTCATAATGTGTCCGTCCTCTTTTTATATTTTTGAGCT  300

seq1  GGGAGCTTAGCCTTTAAAGGTTAAGTCATCTCTTTGAGCCCCAGTCCCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGCTTAGCCTTTAAAGGTTAAGTCATCTCTTTGAGCCCCAGTCCCCT  350

seq1  TCCTAAATGCTTCTGGAGGAATCCTGGCAGAGAGTGGGAAGAAGAAAGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAAATGCTTCTGGAGGAATCCTGGCAGAGAGTGGGAAGAAGAAAGCA  400

seq1  GGGTTGCAAATGGATGGAGTGTAAGGAGTTTTTAATGTATTTTTTTGTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTGCAAATGGATGGAGTGTAAGGAGTTTTTAATGTATTTTTTTGTAA  450

seq1  CTTTTTGTAGCTAAAAATTGTATCAAAACAAAACCCCTATATCTTCTTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTGTAGCTAAAAATTGTATCAAAACAAAACCCCTATATCTTCTTTA  500

seq1  TCCTGCCTTTAAAAACCAACAAGGAGGGAAAAGGAGGGAG  540
      ||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGCCTTTAAAAACCAACAAGGAGGGAAAAGGAGGGAG  540

seq1: chr9_70267431_70268497
seq2: B6Ng01-245H20.g_66_1122 (reverse)

seq1  AACTTGCAGAGTTAGGTTTTGGTTTTTGTCTTTAAATTTAATTATTTTTT  50
      |||||||||||| ||   |||   ||||||||  ||||||  ||||||||
seq2  AACTTGCAGAGTAAG---TTG---TTTGTCTT--AATTTA--TATTTTTT  40

seq1  ATGGGAAAAGGTACATTTAAAGAAATCTAAAAATGCTATTTGAAATATCA  100
      |||||||   ||||| |||||||||||| |||||||||||||||||||||
seq2  ATGGGAA---GTACA-TTAAAGAAATCT-AAAATGCTATTTGAAATATCA  85

seq1  CTCTCCATTAGGCAAACACCCACTGCCTT-ACCAAT-AAAACAAAG-ATC  147
      ||||||||||||||||||||||||||||| |||||| ||||||||| |||
seq2  CTCTCCATTAGGCAAACACCCACTGCCTTAACCAATAAAAACAAAGAATC  135

seq1  -TTTTTACTGATCTTATAAATTGTTTTGCATATTCAAGCAGTTTTCAAGC  196
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTACTGATCTTATAAATTGTTTTGCATATTCAAGCAGTTTTCAAGC  185

seq1  GACA-CCAAAGCCTCCCACCTAAATGATTACTTCTTATAAGTAACCTGCG  245
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACCCAAAGCCTCCCACCTAAATGATTACTTCTTATAAGTAACCTGCG  235

seq1  TCTGCTGTTAAGAGATCCCTGTCGGTTCTCTTAGAAACTTCCATTCACAC  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTGTTAAGAGATCCCTGTCGGTTCTCTTAGAAACTTCCATTCACAC  285

seq1  AGTATAGCTGCAATGATAAAGAGCTTTGATACCAATAGTTAATGATAGCC  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATAGCTGCAATGATAAAGAGCTTTGATACCAATAGTTAATGATAGCC  335

seq1  CAGCTGTTTAAAACTCCATGTTTCAGACTTCACACCAGCTTGGGTTATAA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTGTTTAAAACTCCATGTTTCAGACTTCACACCAGCTTGGGTTATAA  385

seq1  CGCCAACCAAAGAATAAGAAATAGCACTTCCAAGGAAAGCCCTTCAGAAA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCAACCAAAGAATAAGAAATAGCACTTCCAAGGAAAGCCCTTCAGAAA  435

seq1  CAGCTTCCTATAGCATAGACTCAAATTAAGGACATTCCCAATGACAACAG  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTTCCTATAGCATAGACTCAAATTAAGGACATTCCCAATGACAACAG  485

seq1  GATGGGGAAGTCATTTTACCTCTCAAGTATTGGGAGAGTCAGACTTGAAT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGGGAAGTCATTTTACCTCTCAAGTATTGGGAGAGTCAGACTTGAAT  535

seq1  GAAAACGAAAAAAAAAAAAAATAGTGTTACTTGAAATTAATTGCCTTCAT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACGAAAAAAAAAAAAAATAGTGTTACTTGAAATTAATTGCCTTCAT  585

seq1  CTTGAATACAGTTAAGAAACAAGGCTTGCTATTCATACCCCAAAGTTTAC  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAATACAGTTAAGAAACAAGGCTTGCTATTCATACCCCAAAGTTTAC  635

seq1  AGTGTGGTACAATAACAAGTATTCCATGAGAAAAAAATATTTAACTTTCT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTGGTACAATAACAAGTATTCCATGAGAAAAAAATATTTAACTTTCT  685

seq1  GAGTGTTGGGGGAGGGGGGGAACTAATCCTACAAAACAAACAAAAAAACC  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGTTGGGGGAGGGGGGGAACTAATCCTACAAAACAAACAAAAAAACC  735

seq1  TCTCCAAAGGTTGGGGTTTTTTTGTTTTTTTTTAAGATGACCTGTGTAGG  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCAAAGGTTGGGGTTTTTTTGTTTTTTTTTAAGATGACCTGTGTAGG  785

seq1  ATAGACCAGATAAACTGTACCCCATCCCTACACAAGACTTTAACTGTTAA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGACCAGATAAACTGTACCCCATCCCTACACAAGACTTTAACTGTTAA  835

seq1  ATAATTTGAAAGAACAAATTAGACAAAAATTAACTTGTTAGTGGCAGTTA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTTGAAAGAACAAATTAGACAAAAATTAACTTGTTAGTGGCAGTTA  885

seq1  GAGCTACAAGACATGAACCCTGACTGTATGTTCCTCATTGTTTAGGATTC  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTACAAGACATGAACCCTGACTGTATGTTCCTCATTGTTTAGGATTC  935

seq1  TGATCCCCAAATCTAAGCTGTTCGGTCTTTACTGCTAGCTTCCCACGGCT  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCCCCAAATCTAAGCTGTTCGGTCTTTACTGCTAGCTTCCCACGGCT  985

seq1  AAATTCAAAATGAGTTTGAAAGTTCAATTTCTTATGAGTTAAAGCCTGGT  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCAAAATGAGTTTGAAAGTTCAATTTCTTATGAGTTAAAGCCTGGT  1035

seq1  AATGAGGGGTACCCCTGAATTC  1067
      ||||||||||||||||||||||
seq2  AATGAGGGGTACCCCTGAATTC  1057