BAC Information

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BAC

Clone NameB6Ng01-246I12
Chromosome9 (Build37)
Map Location 44,865,155 - 45,005,182
singlet/doubletdoublet
Overlap geneA530065I17Rik, Amica1, Scn2b, Scn4b, Tmprss4
Upstream geneUsp2, Mfrp, Rnf26, LOC100042569, Mcam, Cbl, BC038167, Pdzd3, Nlrx1, Abcg4, Mizf, Tmem24, Dpagt1, H2afx, Hmbs, Vps11, LOC100043172, Hyou1, LOC100043178, Slc37a4, Trappc4, Rps25, Ccdc84, Foxr1, Upk2, Bcl9l, Blr1, Ddx6, LOC667406, LOC100042660, Treh, Phldb1, Arcn1, 1500035H01Rik, Tmem25, BC021608, Mll1, Atp5l, Ube4a, Cd3g, Cd3d, Cd3e, Eva1
Downstream geneIl10ra, Tmprss13, Fxyd6, Fxyd2, Dscaml1, Cep164, LOC640094, Bace1, Rnf214, Pcsk7, Tagln, Sidt2, Pafah1b2, 2610005M20Rik, BC033915
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-246I12.bB6Ng01-246I12.g
ACCGA055124GA055125
length6361,042
definitionB6Ng01-246I12.b B6Ng01-246I12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(45,004,547 - 45,005,182)(44,865,155 - 44,866,185)
sequence
gaattctcttataaacatcagactgcattgtgggtggcagctacctggtt
tgggtaaacgttatttagagaacttatctaagctctagcatccatgagcc
ctcccaacaagcaggtgcccaagaatccatggaaggctggaagtctaacc
tgtgcagcctcataaacacacacacacacacacacacacacacacacaca
cacacacacacacacaaatgcatgcacacacacacacacactaccattgg
gtctcttcgggaagctaccttttcatctgaccgttctggaaagagaaagt
gggcacaggttgttagggcagggggtggggtgggggagctgagcaaaata
gaacaaccaagaattcagaaatagaggggcggggactgccttccctgggt
ttgttggctgtgcaagagtgagctcacaacagagccacctgtaacaaaag
gcctcaggaggaagccaggtgtctacagtcagctcctccgaagacattgg
cccacagtgtagctagagggcagagatcttgcaaaccctgtaccacacct
ccatcatgaaacagggattcttgcctctctaccctggtcttccctctcca
ggctctacccgaagttaagggcctggcagaaacaca
gaattcccagacacataaaataaaaaaacaaaggtgggtagttcacaggc
ctattcattcactaaaatacagttcagtaatttttagtgtgcatggtgtg
caatcatcattacaaccacttcgggaacatttttatcacccaaaagagaa
accctgtatccattctgaccttcccacaggctctggaaaccaccaatctg
cctctttaaacttttgtctactctgggcacttaatacaaagtgaaccagc
cacgcgcccctttgtgagtagctctcttcacgtggtgtgtttgcagtgct
ccatctggttggttgtctgttggttcgttttgtctcttttgaatcgcagg
tggtgggctttgctttcccactagtgtttactcgccatccctcttcagag
actgaaaacccttacattgttgtcatgtttgaattggccttcagttttaa
gtctgattctgcttgtttcagttggctaagtatatataaatgataggctg
ggggtctggggatgtagctctgggtgtaatgatgcatgcatgtaatccta
gcactggggatgtggagggaggagcaccacaagttcagagtcatcctcag
ctgcatagtgaatatgaatcaaacctgagaagcaggagaccctgtctgaa
aaaaacaagagaaggaggaaagggaagaagggaagcaataatggtggaga
gcccagtattacaccttttcatgtaatgccagtatgtaaatttaagatag
gaagatttgcaatttggatgtacaaagtcagtgcctttgattttgtcata
tttaatttctttcagttctaaaattattttattagaatgtgatttgtatt
tttcattaaatggttttgttaatttttcatattttttatggttgtgggct
ggttttacttggccagaataaattatcaaagccagaacacgggttgatcc
catcacttggaaatcctgaggcaggaggatgggagttgttggagctggac
tagcattgggctacataagcatgatccttgtctccaagaaac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_45004547_45005182
seq2: B6Ng01-246I12.b_47_682 (reverse)

seq1  TGTGTTTCTGCCAGGCCCTTAACTTCGGGTAGAGCCTGGAGAGGGAAGAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTTCTGCCAGGCCCTTAACTTCGGGTAGAGCCTGGAGAGGGAAGAC  50

seq1  CAGGGTAGAGAGGCAAGAATCCCTGTTTCATGATGGAGGTGTGGTACAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGTAGAGAGGCAAGAATCCCTGTTTCATGATGGAGGTGTGGTACAGG  100

seq1  GTTTGCAAGATCTCTGCCCTCTAGCTACACTGTGGGCCAATGTCTTCGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGCAAGATCTCTGCCCTCTAGCTACACTGTGGGCCAATGTCTTCGGA  150

seq1  GGAGCTGACTGTAGACACCTGGCTTCCTCCTGAGGCCTTTTGTTCCAGGT  200
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  GGAGCTGACTGTAGACACCTGGCTTCCTCCTGAGGCCTTTTGTTACAGGT  200

seq1  GGCTCTGTTGTGAGCTCACTCTTGCACAGCCAACAAACCCAGGGAAGGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCTGTTGTGAGCTCACTCTTGCACAGCCAACAAACCCAGGGAAGGCA  250

seq1  GTCCCCGCCCCTCTATTTCTGAATTCTTGGTTGTTCTATTTTGCTCAGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCCGCCCCTCTATTTCTGAATTCTTGGTTGTTCTATTTTGCTCAGCT  300

seq1  CCCCCACCCCACCCCCTGCCCTAACAACCTGTGCCCACTTTCTCTTTCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCACCCCACCCCCTGCCCTAACAACCTGTGCCCACTTTCTCTTTCCA  350

seq1  GAACGGTCAGATGAAAAGGTAGCTTCCCGAAGAGACCCAATGGTAGTGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACGGTCAGATGAAAAGGTAGCTTCCCGAAGAGACCCAATGGTAGTGTG  400

seq1  TGTGTGTGTGTGCATGCATTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGCATGCATTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  450

seq1  TGTGTGTGTGTGTGTGTGTGTTTATGAGGCTGCACAGGTTAGACTTCCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTGTGTGTGTTTATGAGGCTGCACAGGTTAGACTTCCAG  500

seq1  CCTTCCATGGATTCTTGGGCACCTGCTTGTTGGGAGGGCTCATGGATGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCATGGATTCTTGGGCACCTGCTTGTTGGGAGGGCTCATGGATGCT  550

seq1  AGAGCTTAGATAAGTTCTCTAAATAACGTTTACCCAAACCAGGTAGCTGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCTTAGATAAGTTCTCTAAATAACGTTTACCCAAACCAGGTAGCTGC  600

seq1  CACCCACAATGCAGTCTGATGTTTATAAGAGAATTC  636
      ||||||||||||||||||||||||||||||||||||
seq2  CACCCACAATGCAGTCTGATGTTTATAAGAGAATTC  636

seq1: chr9_44865155_44866185
seq2: B6Ng01-246I12.g_68_1109

seq1  GAATTCCCAGACACATAAAATAAAAAAACAAAGGTGGGTAGTTCACAGGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCAGACACATAAAATAAAAAAACAAAGGTGGGTAGTTCACAGGC  50

seq1  CTATTCATTCACTAAAATACAGTTCAGTAATTTTTAGTGTGCATGGTGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTCATTCACTAAAATACAGTTCAGTAATTTTTAGTGTGCATGGTGTG  100

seq1  CAATCATCATTACAACCACTTCGGGAACATTTTTATCACCCAAAAGAGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCATCATTACAACCACTTCGGGAACATTTTTATCACCCAAAAGAGAA  150

seq1  ACCCTGTATCCATTCTGACCTTCCCACAGGCTCTGGAAACCACCAATCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTGTATCCATTCTGACCTTCCCACAGGCTCTGGAAACCACCAATCTG  200

seq1  CCTCTTTAAACTTTTGTCTACTCTGGGCACTTAATACAAAGTGAACCAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTTAAACTTTTGTCTACTCTGGGCACTTAATACAAAGTGAACCAGC  250

seq1  CACGCGCCCCTTTGTGAGTAGCTCTCTTCACGTGGTGTGTTTGCAGTGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGCGCCCCTTTGTGAGTAGCTCTCTTCACGTGGTGTGTTTGCAGTGCT  300

seq1  CCATCTGGTTGGTTGTCTGTTGGTTCGTTTTGTCTCTTTTGAATCGCAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCTGGTTGGTTGTCTGTTGGTTCGTTTTGTCTCTTTTGAATCGCAGG  350

seq1  TGGTGGGCTTTGCTTTCCCACTAGTGTTTACTCGCCATCCCTCTTCAGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGGGCTTTGCTTTCCCACTAGTGTTTACTCGCCATCCCTCTTCAGAG  400

seq1  ACTGAAAACCCTTACATTGTTGTCATGTTTGAATTGGCCTTCAGTTTTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAAAACCCTTACATTGTTGTCATGTTTGAATTGGCCTTCAGTTTTAA  450

seq1  GTCTGATTCTGCTTGTTTCAGTTGGCTAAGTATATATAAATGATAGGCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGATTCTGCTTGTTTCAGTTGGCTAAGTATATATAAATGATAGGCTG  500

seq1  GGGGTCTGGGGATGTAGCTCTGGGTGTAATGATGCATGCATGTAATCCTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTCTGGGGATGTAGCTCTGGGTGTAATGATGCATGCATGTAATCCTA  550

seq1  GCACTGGGGATGTGGAGGGAGGAGCACCACAAGTTCAGAGTCATCCTCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTGGGGATGTGGAGGGAGGAGCACCACAAGTTCAGAGTCATCCTCAG  600

seq1  CTGCATAGTGAATATGAATCAAACCTGAGAAGCAGGAGACCCTGTCTGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCATAGTGAATATGAATCAAACCTGAGAAGCAGGAGACCCTGTCTGAA  650

seq1  AAAAACAAGAGAAGGAGGAAAGGGAAGAAGGGAAGCAATAATGGTGGAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACAAGAGAAGGAGGAAAGGGAAGAAGGGAAGCAATAATGGTGGAGA  700

seq1  GCCCAGTATTACACCTTTTCATGTAATGCCAGTATGTAAATTTAAGATAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAGTATTACACCTTTTCATGTAATGCCAGTATGTAAATTTAAGATAG  750

seq1  GAAGATTTGCAATTTGGATGTACAAAGTCAGTGCCTTTGATTTTGTCATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGATTTGCAATTTGGATGTACAAAGTCAGTGCCTTTGATTTTGTCATA  800

seq1  TTTAATTTCTTTCAGTTCTAAAATTATTTTATTAGAATGTGATTTGTATT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATTTCTTTCAGTTCTAAAATTATTTTATTAGAATGTGATTTGTATT  850

seq1  TTTCATTAAATGGTTTTGTTAA-TTTTCATATTTTTTATGGTTGT-GGCT  898
      |||||||||||||||||||||| |||||||||||||||||||||| ||||
seq2  TTTCATTAAATGGTTTTGTTAATTTTTCATATTTTTTATGGTTGTGGGCT  900

seq1  GGTTTTACTTGGCCAGAATAAA-TATC-AAGCCAGAACACGGG-TGATCC  945
      |||||||||||||||||||||| |||| ||||||||||||||| ||||||
seq2  GGTTTTACTTGGCCAGAATAAATTATCAAAGCCAGAACACGGGTTGATCC  950

seq1  CATCACTTGG-AATCCTGAGGCAGGAGGAT-GGAG-TGTTGGAGGCTGGA  992
      |||||||||| ||||||||||||||||||| |||| ||||||| ||||||
seq2  CATCACTTGGAAATCCTGAGGCAGGAGGATGGGAGTTGTTGGA-GCTGGA  999

seq1  CTAGC-TTTGGCTACAT-AGCATGATCC-TGTCT-CAAGAAAC  1031
      ||||| || |||||||| |||||||||| ||||| ||||||||
seq2  CTAGCATTGGGCTACATAAGCATGATCCTTGTCTCCAAGAAAC  1042