BAC Information

Click to search

BAC

Clone NameB6Ng01-246L07
Chromosome9 (Build37)
Map Location 87,775,063 - 87,776,143
singlet/doubletsinglet
Overlap genenone
Upstream geneSnap91, C030002E08Rik, Cyb5r4, LOC666777, LOC244958, LOC100039510, 4922501C03Rik, LOC671706, Tbx18, LOC671731
Downstream geneLOC100039580, LOC384962, EG272633, Nt5e, Snx14, LOC100039601, Syncrip, 2810026P18Rik, 4930422I07Rik, EG547109, LOC100039707, LOC100039721, Bcl2a1d, LOC100039674, EG666731
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-246L07.bB6Ng01-246L07.g
ACCGA055247GA055248
length1,1871,083
definitionB6Ng01-246L07.b B6Ng01-246L07.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtgagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaattggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagaagccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaaactggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagagcatcatcctgagtgaggtaacacaatcacaaa
ggaactcacacaatatgtactcactgataagtggatactagcccaaaacc
taggatacccacgatataagatacaatttcctaaacacatgaaactcaag
aaaaatgaagactgaagtgtggacactatgcccctccttagaagtgggaa
caaaacacccatggaaggagttacagaaacaaagtatggagctgagatga
aaggatggaccatgtagagactgccatatccagggatccaccccataatc
agcttccaaatgctgacaccattgcatacactagcaagattttaccgaaa
ggacccagatgtagctgtctcttgtgagactatgccggggcctagcaaac
acagaagtggatgctcacagtcagctaatgggatggatcacagggctttc
caatgggaggagctagagaaagtaccaaggagctaaagggatcttcaacc
ctataggtggaacaacattatgactaaccagtacccctgagcttctttga
ctctagctgcatatgtatcaaagatggcctagtcgtcatcactggaagaa
gagcccattgaccgcagacttgtgtgcccggtaatggacgcaggccaatg
ggggaattggattgttaggcgttatcagtctacctct
gaattcactggcagctgttccagtatttacaaccaatggcatattcaata
aatgacactgactttttttatttacttttaacagggattcatttagtacc
agctgacttcaaacctgctctgtagctaaggatgactttgaactcctgag
cctccttcccctttccccagtgctgagattaaaatggttctaccaccaca
cctaatatgtgaagattttaaaagctaattctagtgatgcctccaggtaa
agaaagtagaaagtgaaagcaaagaggcagaaaagcttttcctttcatgg
gaggatcctgggctgttctagtggagccctgtgtctggtactgactcatt
ttaggttgaaaaataatggtgaggttatcatgatattatatatctccttt
gagtagatttttttcaaattaaatacagccaatatagcgatatatctgta
gttatgagaggatctacaggccattcagtttttactttattaaccaaaaa
ctctatgacccagatttggcatcagggagtccccagtcaagttgtggaag
caaaaatttagcttcagatacaatgaaagaaacattaaaactcaggtaga
attgaatccaacgagaactagtagtgttaagttttattgtgtgcaatttc
tcttagtattcttatataaaaaataaaaacctcctcaacatttactttta
gattataatttatattcccagaaatagtctttcaattgaaatgactttca
atatgtgtccttctttaccccatattgaaatgatgtagatttatgttgga
tgtactccaagatagaagaatgttccatatgctgtattgtagactgtctg
tactagcagtttgctgttaacgtttattgggggatgtactatactctact
gaaaatgaacaattctaatcttatgttgtatgtaccaggatcacttccac
tttgtggataaaaatctgaaggtagtatgtagtcagtttgcagccagttc
acaaagcaggcaaggcggtgaacgatagatcactgttcttccaaatccca
caacctgattcaacaacactgattgtgatcatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_87775063_87776143
seq2: B6Ng01-246L07.g_69_1151

seq1  GAATTCACTGGCAGCTGTTCCAGTATTTACAACCAATGGCATATTCAATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTGGCAGCTGTTCCAGTATTTACAACCAATGGCATATTCAATA  50

seq1  AATGACACTGACTTTTTTTATTTACTTTTAACAGGGATTCATTTAGTACC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGACACTGACTTTTTTTATTTACTTTTAACAGGGATTCATTTAGTACC  100

seq1  AGCTGACTTCAAACCTGCTCTGTAGCTAAGGATGACTTTGAACTCCTGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGACTTCAAACCTGCTCTGTAGCTAAGGATGACTTTGAACTCCTGAG  150

seq1  CCTCCTTCCCCTTTCCCCAGTGCTGAGATTAAAATGGTTCTACCACCACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTTCCCCTTTCCCCAGTGCTGAGATTAAAATGGTTCTACCACCACA  200

seq1  CCTAATATGTGAAGATTTTAAAAGCTAATTCTAGTGATGCCTCCAGGTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAATATGTGAAGATTTTAAAAGCTAATTCTAGTGATGCCTCCAGGTAA  250

seq1  AGAAAGTAGAAAGTGAAAGCAAAGAGGCAGAAAAGCTTTTCCTTTCATGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGTAGAAAGTGAAAGCAAAGAGGCAGAAAAGCTTTTCCTTTCATGG  300

seq1  GAGGATCCTGGGCTGTTCTAGTGGAGCCCTGTGTCTGGTACTGACTCATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGATCCTGGGCTGTTCTAGTGGAGCCCTGTGTCTGGTACTGACTCATT  350

seq1  TTAGGTTGAAAAATAATGGTGAGGTTATCATGATATTATATATCTCCTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGTTGAAAAATAATGGTGAGGTTATCATGATATTATATATCTCCTTT  400

seq1  GAGTAGATTTTTTTCAAATTAAATACAGCCAATATAGCGATATATCTGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTAGATTTTTTTCAAATTAAATACAGCCAATATAGCGATATATCTGTA  450

seq1  GTTATGAGAGGATCTACAGGCCATTCAGTTTTTACTTTATTAACCAAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATGAGAGGATCTACAGGCCATTCAGTTTTTACTTTATTAACCAAAAA  500

seq1  CTCTATGACCCAGATTTGGCATCAGGGAGTCCCCAGTCAAGTTGTGGAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTATGACCCAGATTTGGCATCAGGGAGTCCCCAGTCAAGTTGTGGAAG  550

seq1  CAAAAATTTAGCTTCAGATACAATGAAAGAAACATTAAAACTCAGGTAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAATTTAGCTTCAGATACAATGAAAGAAACATTAAAACTCAGGTAGA  600

seq1  ATTGAATCCAACGAGAACTAGTAGTGTTAAGTTTTATTGTGTGCAATTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAATCCAACGAGAACTAGTAGTGTTAAGTTTTATTGTGTGCAATTTC  650

seq1  TCTTAGTATTCTTATATAAAAAATAAAAACCTCCTCAACATTTACTTTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAGTATTCTTATATAAAAAATAAAAACCTCCTCAACATTTACTTTTA  700

seq1  GATTATAATTTATATTCCCAGAAATAGTCTTTCAATTGAAATGACTTTCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTATAATTTATATTCCCAGAAATAGTCTTTCAATTGAAATGACTTTCA  750

seq1  ATATGTGTCCTTCTTTACCCCATATTGAAATGATGTAGATTTATGTTGGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTGTCCTTCTTTACCCCATATTGAAATGATGTAGATTTATGTTGGA  800

seq1  TGTACTCCAAGATAGAAGAATGTTCCATATGCTGTATTGTAGACTGTCTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACTCCAAGATAGAAGAATGTTCCATATGCTGTATTGTAGACTGTCTG  850

seq1  TACTAGCAG-TTGCTGTTAACGTTTATT-GGGGATGTACTATACTCTACT  898
      ||||||||| |||||||||||||||||| |||||||||||||||||||||
seq2  TACTAGCAGTTTGCTGTTAACGTTTATTGGGGGATGTACTATACTCTACT  900

seq1  GAAAATGAACAATTCTAATCTTATGTTGTATGTACCAGGATCACTTCCAC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATGAACAATTCTAATCTTATGTTGTATGTACCAGGATCACTTCCAC  950

seq1  TTTGTGGATAAAAATCTGAAGGTAGTATGTAGTCAGTTTGCAGCCAGTTT  998
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TTTGTGGATAAAAATCTGAAGGTAGTATGTAGTCAGTTTGCAGCCAG-TT  999

seq1  CACAAAGCAGGCAA-GCGGTGAACGATAGATCAACTG-TCTCCCAAAT-C  1045
      |||||||||||||| ||||||||||||||||| |||| ||| |||||| |
seq2  CACAAAGCAGGCAAGGCGGTGAACGATAGATC-ACTGTTCTTCCAAATCC  1048

seq1  CACAACCTTGATC-ACAACACTGGATTGTTGATCATT  1081
      ||||||||   || |||||||| ||||| ||||||||
seq2  CACAACCTGATTCAACAACACT-GATTG-TGATCATT  1083