gaattcaacatccgactctcatcaagggacataacttggaaaaagaaaca
taacagagacacattgaaactaacagaagttatgaaagacatggatttaa
gagatatctacataacattttatcctaaaacaaaaggatattccttcttc
tcattacctcatggcaccttctccaaaattgatcatactggtcacaaaac
aggcctcaacaaatacaaaaatagtgaaattatcccatgcatcctatcag
atcaccatggactaaggttgattttcaaaaccagcataaataatagaaag
tcaacattcccgtggaaactgaagaatactctactcaatgataacttggt
caaggaagaaataaagatagaatataaagactttttagagtttaatgaaa
atgaagccacaacatgtccaaacttatgggacacaatgaaagcattccta
agaggaaaactcatagctctgagggcttccaaaaggaaactagagagagc
atacactagcatcttgacaacacacctaaaagccctagaacaaaaggaag
caaattcacccaagaggagtagacattaggaaataatcaaactcattgct
gaaatcaaccatgtagaaacatgaactattcaaagaatcaaccaaaggag
gagttggttctttgagaaaatcaacaagatagataaacacttagccagac
tcactagagggcacaggaaaagcatcctaattaacaaaatcagaaatgca
aagggagacatcacaacagatactgaagaaatccaaaacaccatcagatc
ttctacaaaaggctctgctcaactggaaacctggatgaaataaacaagtt
tctagacagataccaggtaccaaagttaaatcaagatcaggttaatgatc
taaacagtcctacatcccctaaagaaattgaagcagtcattagtggccct
cccaaacaaaaaaagcccaggaccagatggggtttagtgcagagttctat
cagacctttcaaagaagctctaatcccagttctttctcaaactatcccat
atatagcacagagttacccactcattctatgagcacattactctgaatac
ctaacctaccaaagaccaacaaggattgaagaacttcgaaccaactttca
ttatggaatatcgatgcaaaaatccttcaaataaaggtctcttgc

gaattcagtagtatctgagaatggacttggcaattgccaaatcagccagg
aagtgctgtttctattcgggctgagcaatgtttgtttcctactgttttca
aataacacctgtgctactcatgactatttccttctggatttttaaattag
ttttgtgggttagttgtttaattttgattttaggaaactatttttggaga
taggatggaacatacttatccactagtgggtgtctgatgaggatataaga
gttcattttaaccctgagattaataaacaaaaaaaaatgggagggcttaa
ttttggctcatagttttggaaagtacagtttgtggtttcttggcccccat
ctccttgggtagaaacattctgacatggaaccagaatcatcagaagtgaa
agcagcagtagttctagcttttatcaaccaggcagcaccagatattaaaa
ccaaactccaaagcattgagagtgcagaggagaagcagatgagggcagaa
aaagttagagtaaagagaaattaaagagaagaagcacacaggaaccaagg
agcagcctgagacaggatttttctggattctatccgtgcccagagatgag
cctgtacttcagctctctatacccaaattccaccagaaagagctggtcct
ctaagagtgctgacatacttgtgagcacaggtgagaccagcaattctacg
caatttctaggcccaagagggacccgcccagagccatcaggacacagcaa
ccaaggaacagccaggtataggatccttctggtttacatctgcatccaga
gctgaaccagtgtcaagtcctaattggaaagagctggtctccaaggagag
ctacaactctgagcacaggtaagaccacctcttctgctccgaaggactct
ttccggagtcctcaagacacaggaactaacgagcagcctgggacagaatt
cctttctggcttccaactaccccagaagatggaaaatgtgcc

seq1: chr9_3310305_3311486
seq2: B6Ng01-247F05.g_70_1050

seq1  GAATTCAGTAGTATCTGAGAATGTACTTGGCAATTGCCAAGTCAGCCAGG  50
      ||||||||||||||||||||||| |||||||||||||||| |||||||||
seq2  GAATTCAGTAGTATCTGAGAATGGACTTGGCAATTGCCAAATCAGCCAGG  50

seq1  AGGTGCTGTTTCTATTCAGGCTGAGTAATGTTTGTTTTCTACTGTTTTCA  100
      | ||||||||||||||| ||||||| ||||||||||| ||||||||||||
seq2  AAGTGCTGTTTCTATTCGGGCTGAGCAATGTTTGTTTCCTACTGTTTTCA  100

seq1  AATAACACCTTTGCTATTCATGACTATTTCCTTCTGGATTTTTTTAATTA  150
      |||||||||| ||||| ||||||||||||||||||||| ||||| |||||
seq2  AATAACACCTGTGCTACTCATGACTATTTCCTTCTGGA-TTTTTAAATTA  149

seq1  GTTTTGTGGATTAGTTGTTTAATTTTGATTTTAGGAAACTATTTTTGGAG  200
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGTGGGTTAGTTGTTTAATTTTGATTTTAGGAAACTATTTTTGGAG  199

seq1  ATAGGATGGACCAAACTTATACACTAGTGGGTGTCTGATGAGGGTATAAG  250
      |||||||||| || |||||| |||||||||||||||||||||| |     
seq2  ATAGGATGGAACATACTTATCCACTAGTGGGTGTCTGATGAGGAT-----  244

seq1  AGCTCATTTTTTTTAAAGATTTATTTATTAATTGTAAGTACACTGTAGCT  300
                                                        
seq2  --------------------------------------------------  244

seq1  GTCTTCAGACACTCCAGAAGAGGCCATCAGATCTCGTTACGGATGGTTGT  350
                                                        
seq2  --------------------------------------------------  244

seq1  GAGCCACCATGTGGTTGCTGGGATTTGAACTCCGGACCTTCGGAAGAGCA  400
                                                        
seq2  --------------------------------------------------  244

seq1  GTCGGGTGCTCTTACCCACTGAGCCATCTTACCAGCCCATAAGAGCTCAT  450
                                            ||||||| ||||
seq2  --------------------------------------ATAAGAGTTCAT  256

seq1  TTTAACCCTGAGATTATTTAACAAAAAAATCTTGGGAGGGCTTAATTTTG  500
      |||||||||||||||| | ||||||||||   ||||||||||||||||||
seq2  TTTAACCCTGAGATTAATAAACAAAAAAA-AATGGGAGGGCTTAATTTTG  305

seq1  GCTCATAGTTTTGGAAAGTACAGCTTGTGGTTTCTTGGCCCCCATCTGCT  550
      ||||||||||||||||||||||| ||||||||||||||||||||||| ||
seq2  GCTCATAGTTTTGGAAAGTACAGTTTGTGGTTTCTTGGCCCCCATCTCCT  355

seq1  TTGGTAGCAACATTCTGACATGGAACAAGAATCACCAGAAGTGAAAACAA  600
      | ||||| |||||||||||||||||| ||||||| ||||||||||| || 
seq2  TGGGTAGAAACATTCTGACATGGAACCAGAATCATCAGAAGTGAAAGCAG  405

seq1  CAGTAGCTCTAGCTTTTATCAACCAGGCAGCACCAGATATTAAAAGCAAA  650
      |||||| |||||||||||||||||||||||||||||||||||||| ||||
seq2  CAGTAGTTCTAGCTTTTATCAACCAGGCAGCACCAGATATTAAAACCAAA  455

seq1  CTCCAAAGCGTTGAGAGTGCA---GAGAAGCAGATGAGGGCAGAGAAAGG  697
      ||||||||| |||||||||||   |||||||||||||||||||| |||| 
seq2  CTCCAAAGCATTGAGAGTGCAGAGGAGAAGCAGATGAGGGCAGAAAAAGT  505

seq1  TAGAGTAAATAGAAATGAAAGAGAAGAAGCACACAGGAACCAAAGAGCAG  747
      ||||||||| |||||| |||||||||||||||||||||||||| ||||||
seq2  TAGAGTAAAGAGAAATTAAAGAGAAGAAGCACACAGGAACCAAGGAGCAG  555

seq1  CCTGAGACAGGATTCTTCTGGATTCTATCCACGCCCAGAGTTGAACCTGT  797
      |||||||||||||| |||||||||||||||  |||||||| ||| |||||
seq2  CCTGAGACAGGATTTTTCTGGATTCTATCCGTGCCCAGAGATGAGCCTGT  605

seq1  ACTTCAGCTCTTTATACCCAAATTCCACCAGAGAGAGATGGTCCTCTAAG  847
      ||||||||||| |||||||||||||||||||| |||| ||||||||||||
seq2  ACTTCAGCTCTCTATACCCAAATTCCACCAGAAAGAGCTGGTCCTCTAAG  655

seq1  AGTGCTGACATACCTGTGAGCACAGGTGAGGCCACCACTGCTACTCAAAT  897
      ||||||||||||| |||||||||||||||| ||| || | |||| ||| |
seq2  AGTGCTGACATACTTGTGAGCACAGGTGAGACCAGCAATTCTACGCAATT  705

seq1  TCCTGGTCCAAGAGGGACTTGCCCAGAGCCATCAGGACACATCAACCAAG  947
      ||  || |||||||||||  ||||||||||||||||||||| ||||||||
seq2  TCTAGGCCCAAGAGGGACCCGCCCAGAGCCATCAGGACACAGCAACCAAG  755

seq1  GAACAG---GGGACAGGATCCTTCTGGTTTACATTTGCACCCAGAGCTGA  994
      ||||||   || | |||||||||||||||||||| |||| ||||||||||
seq2  GAACAGCCAGGTATAGGATCCTTCTGGTTTACATCTGCATCCAGAGCTGA  805

seq1  ACCAGTGCCACAGCATTCTATACTCAAATCCTAATGGGGGAGAGGTGGTC  1044
      |||||||                |||| ||||||| ||  |||| |||||
seq2  ACCAGTG----------------TCAAGTCCTAATTGGAAAGAGCTGGTC  839

seq1  TCCTGGGAGTGCTACACCTGTGAGCACAGGTATGACCACCAAATCTACT-  1093
      |||  |||| |||||| || |||||||||||| |||||||   ||| || 
seq2  TCCAAGGAGAGCTACAACTCTGAGCACAGGTAAGACCACCTCTTCTGCTC  889

seq1  CAAAGGAC-CCACCTGGAGCCCTCAAGACACAGGAACTGAGGAGCAGCCT  1142
      | |||||| |   | |||| |||||||||||||||||| | |||||||||
seq2  CGAAGGACTCTTTCCGGAGTCCTCAAGACACAGGAACTAACGAGCAGCCT  939

seq1  GGGACAGGAT--CCTTCTGGCTTCCATCTCCACCAGAAGATG  1182
      ||||||| ||  | |||||||||||| || | ||||||||||
seq2  GGGACAGAATTCCTTTCTGGCTTCCAACTACCCCAGAAGATG  981