BAC Information

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BAC

Clone NameB6Ng01-247O08
Chromosome2 (Build37)9 (Build37)
Map Location 40,664,769 - 40,665,95235,676,706 - 35,677,030
singlet/doubletsingletsinglet
Overlap geneLrp1b
Upstream geneLOC100042604, Magmas-ps, LOC666531
Downstream geneLOC100042629
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-247O08.bB6Ng01-247O08.g
ACCGA056114GA056115
length1,172212
definitionB6Ng01-247O08.b B6Ng01-247O08.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(40,664,769 - 40,665,952)(35,676,706 - 35,677,030)
sequence
gaattctttatttagctctgaaccccagttttaaatgtggttacctggtt
ttctggcattctgaccatgttaccatgttaattgtgaatttacagaagag
catgagcatgtgggaactttccatcctctgaggtcgttttttatcgcttt
cttcagagacttgaaattatcatacagattttttacttgcctggttagac
ttacaccaagatattctatattatttatgactcttgtaaagagtattgtt
tatgggaaaccatttttttttattgtgaagaaaatagttttcttacaaaa
caggagtcaccatcgcccatacaattccttcttttggcatttttcctaat
tccaaatcttttgataataatttgatcatgagttcatacctagtatccac
aagtctttctactcacgcattgtctaacatattgaaaataaatcaaagac
aaatatatttcccaatcaaatatacaaaatattacaaaagcaatagcttt
cattttatttctcatcgaagtgatggcttattgctttccacatgcaaaga
aaaatatgtgaaacaacattcagctattaagttgatagtgcaaagaagat
gaaacagagttcatttaaataactgacaatgcaaaacagctttataattg
atgttagaaaattctatagaagtaaataactgtctttcacttagacaata
ttccctctcttgagtgcaagccttaggatcttgaaactctattgtcaagg
ccaatcaaggccaactcatggctcaattgtcaaatagaactcaaggcaac
catgcactgagacatagaaggaattagtgggattgactttaagcatcttc
aacttgacagcgaaagatggaagtgacctatgtagtgaactataatagga
tttccaggaagatttctgactgctcatcaccacctaagtgagcaatgatt
gctaacccagaagctgtaaccacagcaatcacactcagatccattttaca
gtagctgctaaggcagattaatctacagtaaataaaatttagcatgaaaa
gtctgactctgaagaatttttaagtttatagtgacgacagaatccaggtt
cctatcatgtaattaaaagattctattctttcaatgtgccttcatatttg
gggtgaatattcacacggcaat

caggatcaggaagcaggattgggtgggttgttgagcaggggatgggggag
ggtaaagggatgggaattttaagaggggaaaactggaaagggaataacat
ttgaaatgtaaataaagaaaatattctatagccgctgaggcatctccctt
ggcgggctgtaaacagtctgcgactatttttttccacttgatggtgtttt
tttttttttggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_40664769_40665952
seq2: B6Ng01-247O08.b_44_1215

seq1  GAATTCTTTATTTAGCTCTGAACCCCAGTTTTAAATGTGGTTACCTGGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTATTTAGCTCTGAACCCCAGTTTTAAATGTGGTTACCTGGTT  50

seq1  TTCTGGCATTCTGACCATGTTACCATGTTAATTGTGAATTTACAGAAGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGCATTCTGACCATGTTACCATGTTAATTGTGAATTTACAGAAGAG  100

seq1  CATGAGCATGTGGGAACTTTCCATCCTCTGAGGTCGTTTTTTATCGCTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAGCATGTGGGAACTTTCCATCCTCTGAGGTCGTTTTTTATCGCTTT  150

seq1  CTTCAGAGACTTGAAATTATCATACAGATTTTTTACTTGCCTGGTTAGAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAGAGACTTGAAATTATCATACAGATTTTTTACTTGCCTGGTTAGAC  200

seq1  TTACACCAAGATATTCTATATTATTTATGACTCTTGTAAAGAGTATTGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACACCAAGATATTCTATATTATTTATGACTCTTGTAAAGAGTATTGTT  250

seq1  TATGGGAAACCATTTTTTTTTATTGTGAAGAAAATAGTTTTCTTACAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGGAAACCATTTTTTTTTATTGTGAAGAAAATAGTTTTCTTACAAAA  300

seq1  CAGGAGTCACCATCGCCCATACAATTCCTTCTTTTGGCATTTTTCCTAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGTCACCATCGCCCATACAATTCCTTCTTTTGGCATTTTTCCTAAT  350

seq1  TCCAAATCTTTTGATAATAATTTGATCATGAGTTCATACCTAGTATCCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAATCTTTTGATAATAATTTGATCATGAGTTCATACCTAGTATCCAC  400

seq1  AAGTCTTTCTACTCACGCATTGTCTAACATATTGAAAATAAATCAAAGAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCTTTCTACTCACGCATTGTCTAACATATTGAAAATAAATCAAAGAC  450

seq1  AAATATATTTCCCAATCAAATATACAAAATATTACAAAAGCAATAGCTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATATTTCCCAATCAAATATACAAAATATTACAAAAGCAATAGCTTT  500

seq1  CATTTTATTTCTCATCGAAGTGATGGCTTATTGCTTTCCACATGCAAAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTATTTCTCATCGAAGTGATGGCTTATTGCTTTCCACATGCAAAGA  550

seq1  AAAATATGTGAAACAACATTCAGCTATTAAGTTGATAGTGCAAAGAAGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATATGTGAAACAACATTCAGCTATTAAGTTGATAGTGCAAAGAAGAT  600

seq1  GAAACAGAGTTCATTTAAATAACTGACAATGCAAAACAGCTTTATAATTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACAGAGTTCATTTAAATAACTGACAATGCAAAACAGCTTTATAATTG  650

seq1  ATGTTAGAAAATTCTATAGAAGTAAATAACTGTCTTTCACTTAGACAATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTAGAAAATTCTATAGAAGTAAATAACTGTCTTTCACTTAGACAATA  700

seq1  TTCCCTCTCTTGAGTGCAAGCCTTAGGATCTTGAAACTCTATTGTCAAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTCTCTTGAGTGCAAGCCTTAGGATCTTGAAACTCTATTGTCAAGG  750

seq1  CCAATCAAGGCCAACTCATGGCTCAATTGTCAAATAGAACTCAAGGCAAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATCAAGGCCAACTCATGGCTCAATTGTCAAATAGAACTCAAGGCAAC  800

seq1  CATGCACTGAGACATAGAAGGAATTAGTGGGATTGACTTTAAGCATCTTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCACTGAGACATAGAAGGAATTAGTGGGATTGACTTTAAGCATCTTC  850

seq1  AACTTGACAGCGAAAGATGGAAGTGACCTATGTAGTGAACTATAATAGGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTGACAGCGAAAGATGGAAGTGACCTATGTAGTGAACTATAATAGGA  900

seq1  TTTCCAGGAAGATTTCTGACTGCTCATCACCACCTAAGTGAGCAATGATT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCAGGAAGATTTCTGACTGCTCATCACCACCTAAGTGAGCAATGATT  950

seq1  GCTAACCCAGAAGCTGTAACCACAGCAATCACACTCAGGATCCATTTTAC  1000
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  GCTAACCCAGAAGCTGTAACCACAGCAATCACACTCA-GATCCATTTTAC  999

seq1  AGTAGCTGCTAAGGGCAGATTAAATCTTACAGTAAATAAAATTTAGCATT  1050
      |||||||||||| |||||||| |||| ||||||||||||||||||||| |
seq2  AGTAGCTGCTAA-GGCAGATT-AATC-TACAGTAAATAAAATTTAGCA-T  1045

seq1  GAAAAGTCTGACTCCTGAAGAATTTTTAAGGTTTTAATAGTGACAGAGAA  1100
      ||||||||||||| ||||||||||||||||   || |||||||| || | 
seq2  GAAAAGTCTGACT-CTGAAGAATTTTTAAG---TTTATAGTGAC-GACAG  1090

seq1  GATACAAGTTTCTATCTATTGTATATAAAAGGATTTCTATATCTTTTCCA  1150
       || || ||| |||||   ||||  ||||||   |||||| || |||| |
seq2  AATCCAGGTTCCTATC--ATGTAATTAAAAG--ATTCTAT-TC-TTTCAA  1134

seq1  TGTGCCTTTCATATTT--GGTGAATAT---CACAGCAAT  1184
      |||||| |||||||||  |||||||||   ||| |||||
seq2  TGTGCC-TTCATATTTGGGGTGAATATTCACACGGCAAT  1172


seq1: chr9_35676706_35677030
seq2: B6Ng01-247O08.g_137_283 (reverse)

seq1  ACCAAAAAAAAAAACATAGTTTAAATTATATTTCCCTTAGGCTTACAACA  50
                                                        
seq2  --------------------------------------------------  0

seq1  CTAATATCTTGACTATTACATTAATTTTAGAGCTATGGAGAACTGGGTAC  100
                                                        
seq2  --------------------------------------------------  0

seq1  TTCTTGGTGTCAGTCAAGCCAGGAGTAACAGAAATAAGGCTAAACAGAAC  150
                                | || ||| ||    ||| | | |
seq2  --------------------------ACCAAAAAAAA----AAAAACACC  20

seq1  ATAAGCTTTGAAGCTGCATTC-TAGACCTTTCTATGTATATATGCTACAA  199
      || |  |   ||     | ||  ||||       ||| || |  |  | |
seq2  ATCAAGTGGAAAAAAATAGTCGCAGAC-------TGTTTACAGCCCGCCA  63

seq1  GAAATATATATATGCTACAAGAAACTCAGTGTCTAGGGCTGGGAGCACAG  249
           |   | ||||         ||||| | |||               
seq2  -----AGGGAGATGC---------CTCAGCGGCTA---------------  84

seq1  CATGTTTTTCTAATTAG-ATATTTTCTTTATTTACATTTCAAATGTTATC  298
                    ||| ||||||||||||||||||||||||||||||| 
seq2  --------------TAGAATATTTTCTTTATTTACATTTCAAATGTTATT  120

seq1  CCCTTTCCTAGTTTCCCCTCTGAAAAT  325
      ||||||||   |||||||||| |||||
seq2  CCCTTTCCAGTTTTCCCCTCTTAAAAT  147


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