BAC Information

Click to search

BAC

Clone NameB6Ng01-248J06
Chromosome9 (Build37)
Map Location 68,046,987 - 68,193,518
singlet/doubletdoublet
Overlap genenone
Upstream geneTln2, LOC100041390, LOC100040253, EG640799, LOC665794, 3300001A09Rik, EG244911, Vps13c, LOC100041451
Downstream geneRora, 9530091C08Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-248J06.bB6Ng01-248J06.g
ACCGA056618GA056619
length1,071586
definitionB6Ng01-248J06.b B6Ng01-248J06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(68,192,468 - 68,193,518)(68,046,987 - 68,047,572)
sequence
gaattccaggacagccaaggctacacagagaaacccttttttgaaagaga
gagagagagagagagagagagagagagagagagagagagagagagaatat
gaatatctgatactaaaaagagttgtctccctaaccaactgtaagaagtt
ttcaatacatgacaactggagccaacctggaagtgttcaggatggtgtag
atagccctccccaaacttatagcagattattatacccccacattcatttc
tgttattttacctatttcttcagcacaagcattaaaatgttgagctgtgt
ccccattaattgatcaccttgacactctacagccatagccaatgagttga
aaatgactttacccaaggaacactctaccaaaagaaagggcaataaaggg
gccatttcacaaccatccacaatgactcccaaatttcacatttctacctc
tgatctggcaattatagctacagactgaagattttcaagcaatttctgcc
gttccaggtgcaggcagagctgtttaatgggcgtttgcaggttaggaggg
agtttatgggactccttctctatggcctcccaaaacccagctgcaaaatc
tagagacccttgcaaaacagtttctcacttaacaatatagaatcagagag
ccacttagaggagctaaaattgaactgttgagtagcaggtttcagaggag
ggaggaaagagccagccccaatgtcctttcagtcaatgtttccagaggac
atctttagccagagcaccagattgccagcgtgtgatgagcctttgccttc
caggcgagacctgccacacattttctttttcatacaccataggctgggga
agtacgttatagaatctacaaggcacttaaaagtcaatttttataatcgc
ttcctgccaccggaattggccccacttttcccccttagagcttggggatt
tcattcatattaaaggagagacctctgaaagagggtactttcttatcagc
aacagatacatcttccaggcaattgtctgcaggagaagaggggctcccac
acccagccatgcaacttcccc

gaattcattgtgaatacctttgctgcaatttccttttctcctacaaattg
cagctcttttacaaattagctcttttattttgtatagggaaaacatcata
ctggtagtggcgatgacatgggcagttgagagtttgccagtcccttcata
gttttctgagcactgctcgctcttctcttgtaggggagatttgtagcatc
agtcttatctcgtcttccaagatgaaggtgtgtaataggcatctcagaga
tggaactttgccaccaaagtttccactgtatctgtcctgttcaaaagact
tgtcactagccacgggatggttcttaagtacttgaaatatgactagtaca
actgaagatgtgaattttgacttaaactaaattttattagttaaagtttg
aatcagaactcctgcttctagctagtggccttgtatgatggttaatctta
atgaaatttaaagtcattgtggaaacaagcctcggagactgtctgagatt
tgggttcattgaaatggactgactcaccgtgactatgggtggcatcattc
catgatctcaggggcgtggtggtggtggtggtggtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_68192468_68193518
seq2: B6Ng01-248J06.b_46_1116 (reverse)

seq1  -GGGGAGTTGCAT-GCT-GGTGTGAGAGCCCCTCTTCTCTTGCAGAC-AT  46
       ||| |||||||| ||| |||||| |||||||||||||| ||||||| ||
seq2  GGGGAAGTTGCATGGCTGGGTGTGGGAGCCCCTCTTCTCCTGCAGACAAT  50

seq1  TGCCT-GAAGATGTATCTGGTTGCTGGATAGAAAGT-GCCTCTTTCAGA-  93
      ||||| |||||||||||| |||||||   |||||||  ||||||||||| 
seq2  TGCCTGGAAGATGTATCT-GTTGCTGATAAGAAAGTACCCTCTTTCAGAG  99

seq1  GTCTCTCC-TTAATATG-ATGAAATCCCCAAGCTCTA--GGGGGAAAGTG  139
      |||||||| |||||||| |||||||||||||||||||  |||| ||||||
seq2  GTCTCTCCTTTAATATGAATGAAATCCCCAAGCTCTAAGGGGGAAAAGTG  149

seq1  GG--CCATTCCG--TGCA-GAAGCGATTATAAAAATTGACTTTTAAGTTG  184
      ||  | ||||||   ||| |||||||||||||||||||||||||||||  
seq2  GGGCCAATTCCGGTGGCAGGAAGCGATTATAAAAATTGACTTTTAAGTGC  199

seq1  CTTGTAGATTCTATAACGTACTT-CCCAGCCTATGGTGTATG-AAAAGAA  232
      ||||||||||||||||||||||| |||||||||||||||||| |||||||
seq2  CTTGTAGATTCTATAACGTACTTCCCCAGCCTATGGTGTATGAAAAAGAA  249

seq1  AATGTGTGGCAGGTCTCGCCTGGAAGGCAAAGGCTCATCACACGCTGGCA  282
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTGTGGCAGGTCTCGCCTGGAAGGCAAAGGCTCATCACACGCTGGCA  299

seq1  ATCTGGTGCTCTGGCTAAAGATGTCCTCTGGAAACATTGACTG-AAGGAC  331
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  ATCTGGTGCTCTGGCTAAAGATGTCCTCTGGAAACATTGACTGAAAGGAC  349

seq1  ATTGGGGCTGGCTCTTTCCTCCCTCCTCTGAAACCTGCTACTCAACAGTT  381
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGGGCTGGCTCTTTCCTCCCTCCTCTGAAACCTGCTACTCAACAGTT  399

seq1  CAATTTTAGCTCCTCTAAGTGGCTCTCTGATTCTATATTGTTAAGTGAGA  431
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTTTAGCTCCTCTAAGTGGCTCTCTGATTCTATATTGTTAAGTGAGA  449

seq1  AACTGTTTTGCAAGGGTCTCTAGATTTTGCAGCTGGGTTTTGGGAGGCCA  481
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGTTTTGCAAGGGTCTCTAGATTTTGCAGCTGGGTTTTGGGAGGCCA  499

seq1  TAGAGAAGGAGTCCCATAAACTCCCTCCTAACCTGCAAACGCCCATTAAA  531
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGAAGGAGTCCCATAAACTCCCTCCTAACCTGCAAACGCCCATTAAA  549

seq1  CAGCTCTGCCTGCACCTGGAACGGCAGAAATTGCTTGAAAATCTTCAGTC  581
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTCTGCCTGCACCTGGAACGGCAGAAATTGCTTGAAAATCTTCAGTC  599

seq1  TGTAGCTATAATTGCCAGATCAGAGGTAGAAATGTGAAATTTGGGAGTCA  631
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGCTATAATTGCCAGATCAGAGGTAGAAATGTGAAATTTGGGAGTCA  649

seq1  TTGTGGATGGTTGTGAAATGGCCCCTTTATTGCCCTTTCTTTTGGTAGAG  681
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGGATGGTTGTGAAATGGCCCCTTTATTGCCCTTTCTTTTGGTAGAG  699

seq1  TGTTCCTTGGGTAAAGTCATTTTCAACTCATTGGCTATGGCTGTAGAGTG  731
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCCTTGGGTAAAGTCATTTTCAACTCATTGGCTATGGCTGTAGAGTG  749

seq1  TCAAGGTGATCAATTAATGGGGACACAGCTCAACATTTTAATGCTTGTGC  781
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGGTGATCAATTAATGGGGACACAGCTCAACATTTTAATGCTTGTGC  799

seq1  TGAAGAAATAGGTAAAATAACAGAAATGAATGTGGGGGTATAATAATCTG  831
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGAAATAGGTAAAATAACAGAAATGAATGTGGGGGTATAATAATCTG  849

seq1  CTATAAGTTTGGGGAGGGCTATCTACACCATCCTGAACACTTCCAGGTTG  881
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAAGTTTGGGGAGGGCTATCTACACCATCCTGAACACTTCCAGGTTG  899

seq1  GCTCCAGTTGTCATGTATTGAAAACTTCTTACAGTTGGTTAGGGAGACAA  931
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCAGTTGTCATGTATTGAAAACTTCTTACAGTTGGTTAGGGAGACAA  949

seq1  CTCTTTTTAGTATCAGATATTCATAT--TCTCTCTCTCTCTCTCTCTCTC  979
      ||||||||||||||||||||||||||  ||||||||||||||||||||||
seq2  CTCTTTTTAGTATCAGATATTCATATTCTCTCTCTCTCTCTCTCTCTCTC  999

seq1  TCTCTCTCTCTCTCTCTCTCTCTCTCTTTCAAAAAAGGGTTTCTCTGTGT  1029
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTCTCTCTCTCTCTCTCTCTCTTTCAAAAAAGGGTTTCTCTGTGT  1049

seq1  AGCCTTGGCTGTCCTGGAATTC  1051
      ||||||||||||||||||||||
seq2  AGCCTTGGCTGTCCTGGAATTC  1071


seq1: chr9_68046987_68047572
seq2: B6Ng01-248J06.g_69_654

seq1  GAATTCATTGTGAATACCTTTGCTGCAATTTCCTTTTCTCCTACAAATTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTGTGAATACCTTTGCTGCAATTTCCTTTTCTCCTACAAATTG  50

seq1  CAGCTCTTTTACAAATTAGCTCTTTTATTTTGTATAGGGAAAACATCATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTCTTTTACAAATTAGCTCTTTTATTTTGTATAGGGAAAACATCATA  100

seq1  CTGGTAGTGGCGATGACATGGGCAGTTGAGAGTTTGCCAGTCCCTTCATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTAGTGGCGATGACATGGGCAGTTGAGAGTTTGCCAGTCCCTTCATA  150

seq1  GTTTTCTGAGCACTGCTCGCTCTTCTCTTGTAGGGGAGATTTGTAGCATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCTGAGCACTGCTCGCTCTTCTCTTGTAGGGGAGATTTGTAGCATC  200

seq1  AGTCTTATCTCGTCTTCCAAGATGAAGGTGTGTAATAGGCATCTCAGAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTTATCTCGTCTTCCAAGATGAAGGTGTGTAATAGGCATCTCAGAGA  250

seq1  TGGAACTTTGCCACCAAAGTTTCCACTGTATCTGTCCTGTTCAAAAGACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAACTTTGCCACCAAAGTTTCCACTGTATCTGTCCTGTTCAAAAGACT  300

seq1  TGTCACTAGCCACGGGATGGTTCTTAAGTACTTGAAATATGACTAGTACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCACTAGCCACGGGATGGTTCTTAAGTACTTGAAATATGACTAGTACA  350

seq1  ACTGAAGATGTGAATTTTGACTTAAACTAAATTTTATTAGTTAAAGTTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAAGATGTGAATTTTGACTTAAACTAAATTTTATTAGTTAAAGTTTG  400

seq1  AATCAGAACTCCTGCTTCTAGCTAGTGGCCTTGTATGATGGTTAATCTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAGAACTCCTGCTTCTAGCTAGTGGCCTTGTATGATGGTTAATCTTA  450

seq1  ATGAAATTTAAAGTCATTGTGGAAACAAGCCTCGGAGACTGTCTGAGATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAATTTAAAGTCATTGTGGAAACAAGCCTCGGAGACTGTCTGAGATT  500

seq1  TGGGTTCATTGAAATGGACTGACTCACCGTGACTATGGGTGGCATCATTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTTCATTGAAATGGACTGACTCACCGTGACTATGGGTGGCATCATTC  550

seq1  CATGATCTCAGGGGCGTGGTGGTGGTGGTGGTGGTG  586
      ||||||||||||||||||||||||||||||||||||
seq2  CATGATCTCAGGGGCGTGGTGGTGGTGGTGGTGGTG  586


| Home | SequenceCutter | Blast | Download |