BAC Information

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BAC

Clone NameB6Ng01-248P05
Chromosome9 (Build37)X (Build37)
Map Location 33,482,754 - 33,483,37112,704,636 - 12,704,846
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC669759, LOC100041398, Ets1, LOC100041426
Downstream geneLOC100042343, Kirrel3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-248P05.bB6Ng01-248P05.g
ACCGA056895GA056896
length618953
definitionB6Ng01-248P05.b B6Ng01-248P05.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(33,482,754 - 33,483,371)(12,704,636 - 12,704,846)
sequence
gaattcttcagaccccctatccttcatgttctcctttctcccacacttga
agggtctccaatttcttaaatggcttttagtaatttgtgtggctttcatc
ccagcctctccagagatgtcttgtcagacaatagcacttggtaactctgt
tgtcttcttccctcacagggttacattattttttatttcttccctccact
tctttctaaatggtgtcactggagactgacagaagcctgaaatgatttgc
tgggattcctcaggcattaatgcctcttcagactacagcagagtgatatc
tgagttatggctttccaaagtggatttttttttatttaatgcttgaaata
taatcttaagagaagaaaaacgcaaaacaatatgtaaattaaaatttgta
aaatgtgttccagtgaagatagaccctggaaaattatacatagaggcctc
aaaagttgttttgggtggtggaattaggtaagcttaatggttgtttgttt
tctcatgctattacttttaacagtatcattctttttgagttcaaatattt
ctaagcttgtcagtccctagggtaaactaaattcagccaatgagtataaa
tggtacgggggggggggg

gaattcatgtgtgtaaatgctctttccatgtctggaaacactgttttaat
acagtaatagacttcctttgtctcttacttaaaaaaaaaaaaaacagttt
ttaattattttatttatttacattccaaaggccctaccccaatccaccct
cccagagttcttcacaccatttctcctcctcttcacctttaaggggtgct
tccctctccctgggcatccccgtttctagggcatcaagtctctacagtgc
atcctctcccattgataccaggcaaggcaatcctctgctacatatgtgcc
atgtactgtgggccttgatccagcctctgtatgctttttggttggtgact
tagtctctgggagctcccaggggttagttgacacagttggtcattccata
gggttgccatccctttcagttcctgtcctgtgagaggctctaacagcagt
tgactgagacagaagcagatagctatagccaaccactagactgagattag
gaactcatggaggagttattggaaagtttgaaggcttttaccttttttgt
ttggttggttgtttgttgtttgttgttttgtttttgttttagagacaggg
tttctgtgtgtagccctggctatcctggaactcactctgtagaccaggat
ggccttgaactcagaaatctgcctacctctgcctctcaagtgctggaatt
aaaggcatgtgccaccactgcccagcaggcttttacatattaaaaaaaaa
atctataacacttttctaaatagggctcagtgtttttttttaattaaaaa
atactttaattcatgctttgtgggatatcatttttaattttgggggtgaa
ttctttctcttatttttaataagaatatttttctttaattaacatttcaa
atgttaatcccatttccctaagttccccttccgaaaaacctcctattccc
tcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_33482754_33483371
seq2: B6Ng01-248P05.b_46_663

seq1  GAATTCTTCAGACCCCCTATCCTTCATGTTCTCCTTTCTCCCACACTTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCAGACCCCCTATCCTTCATGTTCTCCTTTCTCCCACACTTGA  50

seq1  AGGGTCTCCAATTTCTTAAATGGCTTTTAGTAATTTGTGTGGCTTTCATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTCTCCAATTTCTTAAATGGCTTTTAGTAATTTGTGTGGCTTTCATC  100

seq1  CCAGCCTCTCCAGAGATGTCTTGTCAGACAATAGCACTTGGTAACTCTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCCTCTCCAGAGATGTCTTGTCAGACAATAGCACTTGGTAACTCTGT  150

seq1  TGTCTTCTTCCCTCACAGGGTTACATTATTTTTTATTTCTTCCCTCCACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTCTTCCCTCACAGGGTTACATTATTTTTTATTTCTTCCCTCCACT  200

seq1  TCTTTCTAAATGGTGTCACTGGAGACTGACAGAAGCCTGAAATGATTTGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCTAAATGGTGTCACTGGAGACTGACAGAAGCCTGAAATGATTTGC  250

seq1  TGGGATTCCTCAGGCATTAATGCCTCTTCAGACTACAGCAGAGTGATATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGATTCCTCAGGCATTAATGCCTCTTCAGACTACAGCAGAGTGATATC  300

seq1  TGAGTTATGGCTTTCCAAAGTGGATTTTTTTTTATTTAATGCTTGAAATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTATGGCTTTCCAAAGTGGATTTTTTTTTATTTAATGCTTGAAATA  350

seq1  TAATCTTAAGAGAAGAAAAACGCAAAACAATATGTAAATTAAAATTTGTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCTTAAGAGAAGAAAAACGCAAAACAATATGTAAATTAAAATTTGTA  400

seq1  AAATGTGTTCCAGTGAAGATAGACCCTGGAAAATTATACATAGAGGCCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTGTTCCAGTGAAGATAGACCCTGGAAAATTATACATAGAGGCCTC  450

seq1  AAAAGTTGTTTTGGGTGGTGGAATTAGGTAAGCTTAATGGTTGTTTGTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTTGTTTTGGGTGGTGGAATTAGGTAAGCTTAATGGTTGTTTGTTT  500

seq1  TCTCATGCTATTACTTTTAACAGTATCATTCTTTTTGAGTTCAAATATTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCATGCTATTACTTTTAACAGTATCATTCTTTTTGAGTTCAAATATTT  550

seq1  CTAAGCTTGTCAGTCCCTAGGGTAAACTAAATTCAGCCAATGAGTATAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGCTTGTCAGTCCCTAGGGTAAACTAAATTCAGCCAATGAGTATAAA  600

seq1  TGGTACGGGGGGGGGGGG  618
      ||||||||||||||||||
seq2  TGGTACGGGGGGGGGGGG  618


seq1: chrX_12704636_12704846
seq2: B6Ng01-248P05.g_610_788

seq1  TTTTTGTTTGGTTGGTTTGGTTTGGGGTTTTTTGGTTTTTGTTTGTTTAT  50
      |||||||||||||||||  |||||              |||||||||  |
seq2  TTTTTGTTTGGTTGGTT--GTTTG--------------TTGTTTGTTGTT  34

seq1  TTGGGTACTTTTTTGTTTTGTTTTGAATCAGAGACAGGGTTTCTCTGTGC  100
      |||      ||||||||||          ||||||||||||||| |||| 
seq2  TTG------TTTTTGTTTT----------AGAGACAGGGTTTCTGTGTGT  68

seq1  AGCCCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCCTTGAACT  150
      |||||||||| |||||||||||||||||||||||||| ||||||||||||
seq2  AGCCCTGGCTATCCTGGAACTCACTCTGTAGACCAGGATGGCCTTGAACT  118

seq1  CAGAAATCCACCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGTGTGCG  200
      ||||||||  ||| |||||||||| |||||||||| ||||||||  || |
seq2  CAGAAATCTGCCTACCTCTGCCTCTCAAGTGCTGGAATTAAAGGCATGTG  168

seq1  CCACCACTGCC  211
      |||||||||||
seq2  CCACCACTGCC  179


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