BAC Information

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BAC

Clone NameB6Ng01-249B16
Chromosome8 (Build37)9 (Build37)
Map Location 109,439,017 - 109,439,65443,685,319 - 43,685,642
singlet/doubletsingletsinglet
Overlap geneCirh1a
Upstream genePskh1, Ctrl, Psmb10, Lcat, Slc12a4, Dpep3, Dpep2, Ddx28, Dus2l, Nfatc3, Rbm35b, Lypla3, Slc7a6, Slc7a6os, Prmt7, Smpd3, Zfp90, 6030452D12Rik, Cdh3, LOC100042734, Cdh1, Tmco7, Has3, 5830457O10Rik
Downstream geneEG234703, Sntb2, Vps4a, Cog8, Nip7, Tmed6, Terf2, EG667847, Cyb5b, LOC100042791, Nfat5, Nqo1, Nob1, Wwp2, LOC100042812, Psmd7, LOC100041744, LOC668038
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-249B16.bB6Ng01-249B16.g
ACCGA057008GA057009
length639796
definitionB6Ng01-249B16.b B6Ng01-249B16.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(109,439,017 - 109,439,654)(43,685,319 - 43,685,642)
sequence
gaattccctctgtagaccaggctggcctcaaacgcagaggtccgcctggc
tttgcctctgcctctcaaatgtgcgtagtaacagtcagtgccaccaccat
ccagtgcctaacttaccatctttaccaccctcagcacttggtctgtgact
tgttataaagcttttctcattattagggatacttagatgcagcatatatc
ttagcatataaaactgatgtctgatttttacctcatgtcttcacgttgct
aattgaatcaaaacctattgacaaaggtgctcggtagtgttaaacataca
gaggccattcaataaatatgtgcttcaaacagtgagtgggaaaaggtagt
ttgaaataattagcataggatacagtttcagtttccctcacaccgcagac
gcctccagttgtagctttccagcctcttcacatgagcggccactgggtca
atagtttttatgtttgttttatatttattgtttgtttgtaccacatctca
cgatgtagacctagctgacctgaaaaatgctgtgtagaccaggctggcct
caatctcagattctctgcctcctgagtcctaggattaaaatttaatacca
cgggtccaatagctaattcagttttaaaagtggggacgg
gaattctgagaaattcttggtctaaacgtgccaatacagactaagtgggg
ctttttgttttaatatctctctctctctctttgctataaaatggcaactt
ttcaataatgtacctactgaggaaaatgatagcccttccctgtttttttt
ttttttcgttgttgttttttttgtttgtttggcttggcttggtttttttg
agacagggtttgtgtagctcttgatgtcttagaacttgccatgtagacca
ggctggccttgaactgacagaaatctacctgcctctgcttcccgagtgcc
aagataaagatattcgccaccactgcccagctccctctgtaagttgtttt
ttaaactttatcaatttcttttctgttgctgtaagacagcttgacccaag
caacttatggaagaaagaatttatttgggcttgtggttctagagggtagg
gaatccattatggtaggaaggtgttgcagcaagaagcagacctggcagct
ggagcagaagctcagtgtccagggtgggagagatggctcaggggttaaga
gcactggctgctcttccagaggtcctgagttcaaatcccagcaaccacac
ggtggctcacaaccacctgtatatggggatctgatgccctcttctggtgc
tgtctgaagacagagacagtgtactcatatacataaaaataaatatttaa
agaaaaaataagaagctcaatgctcatatcttgaaccacaagtacagcag
agagggagcagggcatagtagcccacatctttaatcccagcacgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_109439017_109439654
seq2: B6Ng01-249B16.b_45_683

seq1  GAATTCCCTCTGTAGACCAGGCTGGCCTCAAACGCAGAGGTCCGCCTGGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTCTGTAGACCAGGCTGGCCTCAAACGCAGAGGTCCGCCTGGC  50

seq1  TTTGCCTCTGCCTCTCAAATGTGCGTAGTAACAGTCAGTGCCACCACCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCCTCTGCCTCTCAAATGTGCGTAGTAACAGTCAGTGCCACCACCAT  100

seq1  CCAGTGCCTAACTTACCATCTTTACCACCCTCAGCACTTGGTCTGTGACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTGCCTAACTTACCATCTTTACCACCCTCAGCACTTGGTCTGTGACT  150

seq1  TGTTATAAAGCTTTTCTCATTATTAGGGATACTTAGATGCAGCATATATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTATAAAGCTTTTCTCATTATTAGGGATACTTAGATGCAGCATATATC  200

seq1  TTAGCATATAAAACTGATGTCTGATTTTTACCTCATGTCTTCACGTTGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCATATAAAACTGATGTCTGATTTTTACCTCATGTCTTCACGTTGCT  250

seq1  AATTGAATCAAAACCTATTGACAAAGGTGCTCGGTAGTGTTAAACATACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGAATCAAAACCTATTGACAAAGGTGCTCGGTAGTGTTAAACATACA  300

seq1  GAGGCCATTCAATAAATATGTGCTTCAAACAGTGAGTGGGAAAAGGTAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCCATTCAATAAATATGTGCTTCAAACAGTGAGTGGGAAAAGGTAGT  350

seq1  TTGAAATAATTAGCATAGGATACAGTTTCAGTTTCCCTCACACCGCAGAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAATAATTAGCATAGGATACAGTTTCAGTTTCCCTCACACCGCAGAC  400

seq1  GCCTCCAGTTGTAGCTTTCCAGCCTCTTCACATGAGCGGCCACTGGGTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCCAGTTGTAGCTTTCCAGCCTCTTCACATGAGCGGCCACTGGGTCA  450

seq1  ATAGTTTTTATGTTTGTTTTATATTTATTGTTTGTTTGTACCACATCTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTTTTTATGTTTGTTTTATATTTATTGTTTGTTTGTACCACATCTCA  500

seq1  CGATGTAGACCTAGCTGACCTGAAAAATGCTGTGTAGACCAGGCTGGCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGATGTAGACCTAGCTGACCTGAAAAATGCTGTGTAGACCAGGCTGGCCT  550

seq1  CAATCTCAGATTCTCTGCCTCCTGAGTCCTAGGATTAAAATTTAATACCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCTCAGATTCTCTGCCTCCTGAGTCCTAGGATTAAAATTTAATACCA  600

seq1  C-GGTACAATAGCTAATTCAGTTTTAAAAGTGGGGACGG  638
      | ||| |||||||||||||||||||||||||||||||||
seq2  CGGGTCCAATAGCTAATTCAGTTTTAAAAGTGGGGACGG  639

seq1: chr9_43685319_43685642
seq2: B6Ng01-249B16.g_595_773 (reverse)

seq1  TTTCTTTAGATTTATTTATTTATTTATTTATTTATTTACTTAATGTCTAT  50
                                                        
seq2  --------------------------------------------------  0

seq1  ATGAGTACACTGTACCTATACTGATGGTTGTGCGCCATCATGTAGTTGCT  100
                                                        
seq2  --------------------------------------------------  0

seq1  GGGAATTTGAGTTCAGGACCTCTACTCACTTCTGTCGGCCCTGCTAGTTT  150
                                                     |||
seq2  -----------------------------------------------TTT  3

seq1  CGGCCTTAAGATTTATTTATTAT---TCTAAGTACACTGTAGCTGTCTTC  197
      |    | || |||||||| ||||   | | ||||||||||  ||||||||
seq2  C--TTTAAATATTTATTT-TTATGTATATGAGTACACTGTCTCTGTCTTC  50

seq1  AGACA-CACCAGAAGAGGGCATCAGATCCCCAT-TACAGATGGTTGTGAG  245
      ||||| ||||||||||||||||||||||||||| ||||| ||||||||||
seq2  AGACAGCACCAGAAGAGGGCATCAGATCCCCATATACAGGTGGTTGTGAG  100

seq1  CTACCATGTGGTTGCTGGGATTTGAACTCAGGACCTCTGGAAGAGCAATC  295
      | ||| |||||||||||||||||||||||||||||||||||||||||  |
seq2  CCACCGTGTGGTTGCTGGGATTTGAACTCAGGACCTCTGGAAGAGCAGCC  150

seq1  AGTGCTCTTAACTGCTGAGCCATCTCTCC  324
      ||||||||||||  |||||||||||||||
seq2  AGTGCTCTTAACCCCTGAGCCATCTCTCC  179