BAC Information

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BAC

Clone NameB6Ng01-249E01
Chromosome9 (Build37)
Map Location 110,018,046 - 110,169,857
singlet/doubletdoublet
Overlap geneDhx30, Smarcc1, Rn4.5s-ps2, Cspg5
Upstream genePlxnb1, E330009P21Rik, Fbxw13, Fbxw12, Fbxw14, LOC668758, EG382156, Fbxw16, Fbxw19, LOC635668, Fbxw15, EG382106, E330001B16Rik, C85627, EG382109, 1700124P09Rik, Spink8, 3000002C10Rik, Nme6, Camp, Cdc25a, LOC100043782, Mtap4, LOC100049540
Downstream geneTmem103, Scap, Ptpn23, Ngp, Klhl18, Kif9, Setd2, Nradd, Nbeal2, Ccdc12, Pthr1, Myl3, 9430025E04Rik, LOC665549, Tessp2, 1700036D21Rik, Tessp3, BC107230, 1700112C13Rik, Tsp50, Tmie, Als2cl, Gm590, Tdgf1, Lrrc2, Rtp3, ENSMUSG00000057802, Ltf, Ccrl2, LOC100039275, Lrrfip2, Mlh1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-249E01.bB6Ng01-249E01.g
ACCGA057122GA057123
length1,1411,073
definitionB6Ng01-249E01.b B6Ng01-249E01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(110,018,046 - 110,019,189)(110,168,788 - 110,169,857)
sequence
gaattctctccttgctattcctcatcacgaggctgggcctcctggaaaat
aacaaggtaaggtcactggactggcaaccttcactcagaggcaaaactat
accaatcatagacatcaatgtactaactttaaaaaggtttaacacaatag
cctcactcaagaggcccctgaccagttctagacccaccaaatgtgaactg
tgccacagagcatccctaagaaaatgttaagaatcgcttctcggcctttt
ggctaagatcaagtgaaggaaatgttaagaacattttctccaagctcaga
gcaaaagcccctttgcttttctaatcccataatggctataataccaatct
atctaaaatgatacttccagactgggaaaattataccctcaaaattctca
aaaacatttttacagtttacaaagaacgcccatagacttgacctcatgta
atccctgaagctagcctatgaagaacattctctcccggagaaagaaactg
aagcacagatatctaatttacccaggatcccatagcatcaggaccgaatg
aactctgaccccatggtttacacgtttctattacacgacttttcttacat
atcaacctgtattctgcatatatcatgttcattttttgaaagaataagtg
gggtccaaaactggataaaactttttggactatagcttcataaattaaaa
tattgaaaagtttgatctttgggtgtcaggtggggtacacctacatagaa
actttgtcaaagaatatataaatgtagaagtaaaaagcattatcataaat
ctaaataataatatataataaaatcaggaaagagttctcctgcctggaaa
tgtcagactctgagatttaagtataaattataagatgtagtcaagaggtg
catggcacatggcgctggggtcactgcattccaagaaaccgttgcaagga
aaatcattagaaaggtgtaattttactctggccagtagttgcatccaaaa
caagttgagactttgcagctggacggcagcagtttatttgcttaccatgc
atggcgaacactcatgaactgggggttgttagtgacagttctcttgcatt
gggaaagccgcattaaaagaccaatattgcttacacaggac
gaattcactatgtagaccaagctgaacttcaactcatagaaatccacctg
cctccaccccaagagtgctggggctaaaggaacgcacttcactctgaaca
atttaaacagagaaggagactataaatctggccacttaggcagatgggag
gtttacacagcaaagacactgcatactgcatacaactgagcagttgttac
caggaccgtcttgcctacctggcagaatcatgctcttcctgacaagccca
cagaagacttaatggtggaccagaacttcaggacagtgtgcgcccagact
gccatttgagctgcctgttagaagtctgtctttgtgtgggaatggggcta
ggtgtaagtccatgctgtcccatttgtcagtcctggagagcaaacattaa
ctggcctggtggcagactgcttatcttctaggtactttggaggtggcatc
cctttagctattatatatataaaatctcccttgtgtggtttggtgtctcc
taagctaacctattagtaagtcctttataacatcaacactatcaccttga
gtttcttttgtatcaggcactgggattataggcacacatgctgctaagct
tggctttttatatgtgtgctggggcttcgaactcagatcctctcgcttgc
acagctagcacgttacctacaatcatctccccaaccccattctgtccatt
aaaaaaaaaaaccctattattattgtgtgtttgtttgtgtccatgatcca
agtgtgtggacatccgtgctgttatggcacatgtgtggaggtcagagggc
aaccctgtgggactggctctctgttgccaggcttgtccaggaagctccgt
cactggggtgagccagctcccctggccctcgcctttcctcacagagaaga
tccaggaccgggctctagtgtggaacagagagaacagagagacgcgggtg
cttgtctgaaaacgccaggatgagagggactgtcccagagttaagtaact
ccgtgcagggcatagaagtcctcagagacgcttgggccatccctttgatc
acagttcattaagccacacaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_110018046_110019189
seq2: B6Ng01-249E01.b_44_1184

seq1  GAATTCTCTCCTTGCTATTCCTCATCACGAGGCTGGGCCTCCTGGAAAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTCCTTGCTATTCCTCATCACGAGGCTGGGCCTCCTGGAAAAT  50

seq1  AACAAGGTAAGGTCACTGGACTGGCAACCTTCACTCAGAGGCAAAACTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAGGTAAGGTCACTGGACTGGCAACCTTCACTCAGAGGCAAAACTAT  100

seq1  ACCAATCATAGACATCAATGTACTAACTTTAAAAAGGTTTAACACAATAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAATCATAGACATCAATGTACTAACTTTAAAAAGGTTTAACACAATAG  150

seq1  CCTCACTCAAGAGGCCCCTGACCAGTTCTAGACCCACCAAATGTGAACTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCACTCAAGAGGCCCCTGACCAGTTCTAGACCCACCAAATGTGAACTG  200

seq1  TGCCACAGAGCATCCCTAAGAAAATGTTAAGAATCGCTTCTCGGCCTTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCACAGAGCATCCCTAAGAAAATGTTAAGAATCGCTTCTCGGCCTTTT  250

seq1  GGCTAAGATCAAGTGAAGGAAATGTTAAGAACATTTTCTCCAAGCTCAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTAAGATCAAGTGAAGGAAATGTTAAGAACATTTTCTCCAAGCTCAGA  300

seq1  GCAAAAGCCCCTTTGCTTTTCTAATCCCATAATGGCTATAATACCAATCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAAGCCCCTTTGCTTTTCTAATCCCATAATGGCTATAATACCAATCT  350

seq1  ATCTAAAATGATACTTCCAGACTGGGAAAATTATACCCTCAAAATTCTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAAAATGATACTTCCAGACTGGGAAAATTATACCCTCAAAATTCTCA  400

seq1  AAAACATTTTTACAGTTTACAAAGAACGCCCATAGACTTGACCTCATGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACATTTTTACAGTTTACAAAGAACGCCCATAGACTTGACCTCATGTA  450

seq1  ATCCCTGAAGCTAGCCTATGAAGAACATTCTCTCCCGGAGAAAGAAACTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCTGAAGCTAGCCTATGAAGAACATTCTCTCCCGGAGAAAGAAACTG  500

seq1  AAGCACAGATATCTAATTTACCCAGGATCCCATAGCATCAGGACCGAATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCACAGATATCTAATTTACCCAGGATCCCATAGCATCAGGACCGAATG  550

seq1  AACTCTGACCCCATGGTTTACACGTTTCTATTACACGACTTTTCTTACAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCTGACCCCATGGTTTACACGTTTCTATTACACGACTTTTCTTACAT  600

seq1  ATCAACCTGTATTCTGCATATATCATGTTCATTTTTTGAAAGAATAAGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAACCTGTATTCTGCATATATCATGTTCATTTTTTGAAAGAATAAGTG  650

seq1  GGGTCCAAAACTGGATAAAACTTTTTGGACTATAGCTTCATAAATTAAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCCAAAACTGGATAAAACTTTTTGGACTATAGCTTCATAAATTAAAA  700

seq1  TATTGAAAAGTTTGATCTTTGGGTGTCAGGTGGGGTACACCTACATAGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGAAAAGTTTGATCTTTGGGTGTCAGGTGGGGTACACCTACATAGAA  750

seq1  ACTTTGTCAAAGAATATATAAATGTAGAAGTAAAAAGCATTATCATAAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTGTCAAAGAATATATAAATGTAGAAGTAAAAAGCATTATCATAAAT  800

seq1  CTAAATAATAATATATAATAAAATCAGGAAAGAGTTCTCCTGCCTGGAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAATAATAATATATAATAAAATCAGGAAAGAGTTCTCCTGCCTGGAAA  850

seq1  TGTCAGACTCTGAGATTTAAGTATAAATTATAAGATGTAGTCAAGAGGTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAGACTCTGAGATTTAAGTATAAATTATAAGATGTAGTCAAGAGGTG  900

seq1  CATGGCACATGGCGCTGGGGTCACTGCATTCCAAGAAACCGTTGCAAGGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGCACATGGCGCTGGGGTCACTGCATTCCAAGAAACCGTTGCAAGGA  950

seq1  AAATCATTAGAAAAGGTGTAATTTTACTCTGGCCAGTAGGTTGCATCCAA  1000
      |||||||||| ||||||||||||||||||||||||||| ||||||||| |
seq2  AAATCATTAG-AAAGGTGTAATTTTACTCTGGCCAGTA-GTTGCATCC-A  997

seq1  AAACAAGTTGAGACCTTGCAGCTGGACGGCAGCAGTTTATTTGC-TACCA  1049
      |||||||||||||| ||||||||||||||||||||||||||||| |||||
seq2  AAACAAGTTGAGACTTTGCAGCTGGACGGCAGCAGTTTATTTGCTTACCA  1047

seq1  TGCATGGCGAACACCCATGAACTGGGGGTTGTAAGGTGAACAG-TCTC-T  1097
      |||||||||||||| ||||||||||||||||| | ||| |||| |||| |
seq2  TGCATGGCGAACACTCATGAACTGGGGGTTGTTA-GTG-ACAGTTCTCTT  1095

seq1  GCATT-GGAAAGCCGCAATTAAAAGACCAATATTGCTTACACAAGGAC  1144
      ||||| |||||||||| ||||||||||||||||||||||||| |||||
seq2  GCATTGGGAAAGCCGC-ATTAAAAGACCAATATTGCTTACAC-AGGAC  1141

seq1: chr9_110168788_110169857
seq2: B6Ng01-249E01.g_69_1141 (reverse)

seq1  TTTTGTGTTGCTCAATG-ACTGTGATCCAAAGGGTGGCC--AGCGTCTCT  47
      |||||||| ||| |||| ||||||||| || || |||||  |||||||||
seq2  TTTTGTGTGGCTTAATGAACTGTGATCAAAGGGATGGCCCAAGCGTCTCT  50

seq1  GAGGAC-TCTATGCCCCTGCACGGAGGTTACTTAACTCTTGGGACAGTCC  96
      |||||| |||||| ||||||||||| |||||||||||| |||||||||||
seq2  GAGGACTTCTATG-CCCTGCACGGA-GTTACTTAACTC-TGGGACAGTCC  97

seq1  CTCTTCATCCTGGCGTTTTCAGAC-AGCACCCGCGTCTCTCTGTTCTCTC  145
      ||| |||||||||||||||||||| |||||||||||||||||||||||||
seq2  CTC-TCATCCTGGCGTTTTCAGACAAGCACCCGCGTCTCTCTGTTCTCTC  146

seq1  TGTTCCACACTAGAGCCC-GTCCTGGATCTTCTCTGTGAGGAAAGGCGA-  193
      |||||||||||||||||| |||||||||||||||||||||||||||||| 
seq2  TGTTCCACACTAGAGCCCGGTCCTGGATCTTCTCTGTGAGGAAAGGCGAG  196

seq1  GGCCAGGGGAGCTGGCTCACCCCAGTGACGGAGCTTCCTGGACAAGCCTG  243
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAGGGGAGCTGGCTCACCCCAGTGACGGAGCTTCCTGGACAAGCCTG  246

seq1  GCAACAGAGAGCCAGTCCCACAGGGTTGCCCTCTGACCTCCACACATGTG  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACAGAGAGCCAGTCCCACAGGGTTGCCCTCTGACCTCCACACATGTG  296

seq1  CCATAACAGCACGGATGTCCACACACTTGGATCATGGACACAAACAAACA  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAACAGCACGGATGTCCACACACTTGGATCATGGACACAAACAAACA  346

seq1  CACAATAATAATAGGGTTTTTTTTTTTAATGGACAGAATGGGGTTGGGGA  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAATAATAATAGGGTTTTTTTTTTTAATGGACAGAATGGGGTTGGGGA  396

seq1  GATGATTGTAGGTAACGTGCTAGCTGTGCAAGCGAGAGGATCTGAGTTCG  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGATTGTAGGTAACGTGCTAGCTGTGCAAGCGAGAGGATCTGAGTTCG  446

seq1  AAGCCCCAGCACACATATAAAAAGCCAAGCTTAGCAGCATGTGTGCCTAT  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCCCAGCACACATATAAAAAGCCAAGCTTAGCAGCATGTGTGCCTAT  496

seq1  AATCCCAGTGCCTGATACAAAAGAAACTCAAGGTGATAGTGTTGATGTTA  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCCAGTGCCTGATACAAAAGAAACTCAAGGTGATAGTGTTGATGTTA  546

seq1  TAAAGGACTTACTAATAGGTTAGCTTAGGAGACACCAAACCACACAAGGG  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGGACTTACTAATAGGTTAGCTTAGGAGACACCAAACCACACAAGGG  596

seq1  AGATTTTATATATATAATAGCTAAAGGGATGCCACCTCCAAAGTACCTAG  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTTATATATATAATAGCTAAAGGGATGCCACCTCCAAAGTACCTAG  646

seq1  AAGATAAGCAGTCTGCCACCAGGCCAGTTAATGTTTGCTCTCCAGGACTG  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATAAGCAGTCTGCCACCAGGCCAGTTAATGTTTGCTCTCCAGGACTG  696

seq1  ACAAATGGGACAGCATGGACTTACACCTAGCCCCATTCCCACACAAAGAC  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATGGGACAGCATGGACTTACACCTAGCCCCATTCCCACACAAAGAC  746

seq1  AGACTTCTAACAGGCAGCTCAAATGGCAGTCTGGGCGCACACTGTCCTGA  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTTCTAACAGGCAGCTCAAATGGCAGTCTGGGCGCACACTGTCCTGA  796

seq1  AGTTCTGGTCCACCATTAAGTCTTCTGTGGGCTTGTCAGGAAGAGCATGA  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCTGGTCCACCATTAAGTCTTCTGTGGGCTTGTCAGGAAGAGCATGA  846

seq1  TTCTGCCAGGTAGGCAAGACGGTCCTGGTAACAACTGCTCAGTTGTATGC  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGCCAGGTAGGCAAGACGGTCCTGGTAACAACTGCTCAGTTGTATGC  896

seq1  AGTATGCAGTGTCTTTGCTGTGTAAACCTCCCATCTGCCTAAGTGGCCAG  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATGCAGTGTCTTTGCTGTGTAAACCTCCCATCTGCCTAAGTGGCCAG  946

seq1  ATTTATAGTCTCCTTCTCTGTTTAAATTGTTCAGAGTGAAGTGCGTTCCT  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATAGTCTCCTTCTCTGTTTAAATTGTTCAGAGTGAAGTGCGTTCCT  996

seq1  TTAGCCCCAGCACTCTTGGGGTGGAGGCAGGTGGATTTCTATGAGTTGAA  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCCCCAGCACTCTTGGGGTGGAGGCAGGTGGATTTCTATGAGTTGAA  1046

seq1  GTTCAGCTTGGTCTACATAGTGAATTC  1070
      |||||||||||||||||||||||||||
seq2  GTTCAGCTTGGTCTACATAGTGAATTC  1073