BAC Information

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BAC

Clone NameB6Ng01-249F10
Chromosome9 (Build37)
Map Location 116,532,531 - 116,533,326
singlet/doubletsinglet
Overlap geneRbms3
Upstream geneGadl1, EG668829, Tgfbr2, LOC100043817, LOC100043819, D730003K21Rik
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-249F10.bB6Ng01-249F10.g
ACCGA057185GA057186
length1,194803
definitionB6Ng01-249F10.b B6Ng01-249F10.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctccttaatagggacggggtttcgttttctctctctcttgcttct
tacactcttgctcctgaagatgtaagcaataaagttttgccgcagaagat
tttggtttgttgcgtctttcctggccgggcgtgagaacgcgattaagaat
tggtgccgaattccgggacgagaaaatccgggacgagaaattccgggacg
agaaaaaatccgggaagaaaaaacccgggaggaaactcgggacgggagtt
tcaccggcgcaaggaagatccctcattccagaaccagaactgcgggtcgc
ggtaataaaggttcccgtaaagcagactgttaagaaggattcaactgcat
gaattcagaacttttcagctggggaacggcggtaacccgtaagtatagct
ttacgaggtaagcctggccttgaactttctaaggaaattcaagacagtct
atcagaagtaaagtggaaaatagctttataaggtatgtttggccttgaac
tttctctagtgttagaagcccttttgttccttttcacatgttatcaagtg
gttaaggcagggcggattctggatgaagttcaggacaatctatcagaagt
aaagcggggagagagagtaggagcaaagagaaaatatggttcacaaaata
agtatacaggcctttccaagggtcttgaacccgaggaaaagtttaggtca
ggtaagaatacctggggagagattagaaggaaggagaaggaaaaagaaaa
gaaaaaagatcaattagcggaggtctctaggagaaggagcctatactcat
cactaggtgagctcaaggagccagttcttagtagttctgaatcagatgaa
aggctattagggcctggaaaggcgctctcccgagcaggtgaagccactgg
acaataatgacagaggcaggctcttgcagcctacaaggtcttattgtcca
ccctagagttgtagatcaagattataaaggggaacttcagtctctgttct
gttcctcaagttgttcttttctatattcacagggacagaatagctcaact
ataattttgcaggcttacatgcttgtttttcttctctgtattcctagagc
tgcaagaaggatgtctactagaatgaattctgatacttatattgcttgat
gtgtcaagtttatctactcccgaagggtaaacccctcgttgggg
gaattctctaaacatagaagcaaagacacatgggaattaactaggtaaaa
aacaaacaaacaaacaaagaagcaaacaatagagctgagagttacagacc
aaggaaccaacttgtccttgggcttgcatgagcagaggatggaaccatgc
agctgcatgccgatggcttagcagaacacagagacacagagagagatggg
gaggaaggaaattagcttaacaggttggctggctgtagcagcattgtcag
gcatggaaccttgagctctatcctgacgacaatggaaatgtcattgagaa
ttggagaatgacagatgccatgcctataggatggagaatgtctggaaaat
gggcaaacaaacaaaactaaacaccgcaaccctaaaaaaacaaaacaaaa
caaaacaaaaaaaaaaacagaaggggccaaatgcactgaagaatctaggg
aagacatcatggtggcatgtcatcacattctgagaatgaccctgacatta
ctaatgagtttgtcataagtgaagggttaagaataccctggatattataa
tcaattgagtatcaggatagacatcaaattaaggaagcattggtctttaa
ctcccacagctcagtgcccaccattccactgttcaggagctaaactgagg
taggatcacatttgatggggagaaggctgatttctctgctgagttgtgtt
gactttaagatgccttacacacacgacagaggggagactgatcactgttt
ccatgtgttttgtctatctttagccactatcttttatatggtggtgggag
ttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_116532531_116533326
seq2: B6Ng01-249F10.g_65_867 (reverse)

seq1  AAACT-CCACCACCATAT-AAAGATAGTGGCT-AAGATAGAC-AAACACA  46
      ||||| |||||||||||| ||||||||||||| ||||||||| |||||||
seq2  AAACTCCCACCACCATATAAAAGATAGTGGCTAAAGATAGACAAAACACA  50

seq1  TGGAAACAGTGATCAGTCTCCCCTCTGTCGTGTGTGT-AGGCATCTTAAA  95
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TGGAAACAGTGATCAGTCTCCCCTCTGTCGTGTGTGTAAGGCATCTTAAA  100

seq1  GTCAACAC-ACTCAGCAGAGAAATCAGCCTTCTCCCCATC-AATGTGATC  143
      |||||||| ||||||||||||||||||||||||||||||| |||||||||
seq2  GTCAACACAACTCAGCAGAGAAATCAGCCTTCTCCCCATCAAATGTGATC  150

seq1  CTACCTCAGTTTAGCTCCTGAACAGTGGAATGGTGGGCACTGAGCTGTGG  193
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCTCAGTTTAGCTCCTGAACAGTGGAATGGTGGGCACTGAGCTGTGG  200

seq1  GAGTTAAAGACCAATGCTTCCTTAATTTGATGTCTATCCTGATACTCAAT  243
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTAAAGACCAATGCTTCCTTAATTTGATGTCTATCCTGATACTCAAT  250

seq1  TGATTATAATATCCAGGGTATTCTTAACCCTTCACTTATGACAAACTCAT  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTATAATATCCAGGGTATTCTTAACCCTTCACTTATGACAAACTCAT  300

seq1  TAGTAATGTCAGGGTCATTCTCAGAATGTGATGACATGCCACCATGATGT  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAATGTCAGGGTCATTCTCAGAATGTGATGACATGCCACCATGATGT  350

seq1  CTTCCCTAGATTCTTCAGTGCATTTGGCCCCTTCTGTTTTTTTTTTTGTT  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCCTAGATTCTTCAGTGCATTTGGCCCCTTCTGTTTTTTTTTTTGTT  400

seq1  TTGTTTTGTTTTGTTTTTTTAGGGTTGCGGTGTTTAGTTTTGTTTGTTTG  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTGTTTTGTTTTTTTAGGGTTGCGGTGTTTAGTTTTGTTTGTTTG  450

seq1  CCCATTTTCCAGACATTCTCCATCCTATAGGCATGGCATCTGTCATTCTC  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATTTTCCAGACATTCTCCATCCTATAGGCATGGCATCTGTCATTCTC  500

seq1  CAATTCTCAATGACATTTCCATTGTCGTCAGGATAGAGCTCAAGGTTCCA  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTCTCAATGACATTTCCATTGTCGTCAGGATAGAGCTCAAGGTTCCA  550

seq1  TGCCTGACAATGCTGCTACAGCCAGCCAACCTGTTAAGCTAATTTCCTTC  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTGACAATGCTGCTACAGCCAGCCAACCTGTTAAGCTAATTTCCTTC  600

seq1  CTCCCCATCTCTCTCTGTGTCTCTGTGTTCTGCTAAGCCATCGGCATGCA  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCCATCTCTCTCTGTGTCTCTGTGTTCTGCTAAGCCATCGGCATGCA  650

seq1  GCTGCATGGTTCCATCCTCTGCTCATGCAAGCCCAAGGACAAGTTGGTTC  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCATGGTTCCATCCTCTGCTCATGCAAGCCCAAGGACAAGTTGGTTC  700

seq1  CTTGGTCTGTAACTCTCAGCTCTATTGTTTGCTTCTTTGTTTGTTTGTTT  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGTCTGTAACTCTCAGCTCTATTGTTTGCTTCTTTGTTTGTTTGTTT  750

seq1  GTTTTTTACCTAGTTAATTCCCATGTGTCTTTGCTTCTATGTTTAGAGAA  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTTACCTAGTTAATTCCCATGTGTCTTTGCTTCTATGTTTAGAGAA  800

seq1  TTC  796
      |||
seq2  TTC  803