BAC Information

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BAC

Clone NameB6Ng01-250L14
Chromosome9 (Build37)
Map Location 67,845,859 - 67,847,025
singlet/doubletsinglet
Overlap genenone
Upstream geneTpm1, Tln2, LOC100041390, LOC100040253, EG640799, LOC665794, 3300001A09Rik, EG244911, Vps13c
Downstream geneLOC100041451, Rora, 9530091C08Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-250L14.bB6Ng01-250L14.g
ACCGA058190GA058191
length1,1431,192
definitionB6Ng01-250L14.b B6Ng01-250L14.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcactgtggcagtcttgggcatgcattctcttcaatggttttgaag
atccggaatgcttctccccatctcttgcaacccctttagtctttccattc
ctggctccccacctctccccctgggtacaacattttgaaagcccttcagg
cactgagttatcaggtgggtagaggaggctcacactgggcctgtagcaag
gcagatacatcataatccaaagtgaacaaaacattagaagaatacccttg
ggcttcctaagaaaatctaatctgggatagacttcttacctgagattcct
ggggagggatagtggtgttctagtttaaattatgtatgagagaatactaa
tatctttgtggcactttgggactttaaattcattgatctggggggaatct
ttggacatctggtgttttgttttattgttttgtttcttaacaaagctcca
ggtttgtttctgaggcacagccagaactaaaaattaatgatctcacttaa
aacaggctccaaaagctttccagatatcagtcccaatcaggcattgcagt
tactgctgaactacaagaccatcttcatcttggagagaaagatttaaaaa
aaaaaattatggcatttagttgtttggctggggcatgtcaaggctcatgt
gtggtcagatggtgattgtaagagttgctttcatgattctctcctgccat
gctgatctcaagaattaaatccagtttgtcaagcttccctgctgagccaa
tttactgtccccgcaaagaatcttaaaaaacagaaggttgctcatttcat
agtcatgtgtccttgaggaaggccttttggttgaatgttgtggccatgat
tcttgtgactactgctaagaggggttctaggccatgtgtgttttctctga
aagagagtggaacctaccaggacagagggacatagctcactctaatggtg
accatgcctctggattttaatttcttcctgacttatttcaaacctcctca
tggaaagcccagccatttaaatatcttatcgtgggtcattttggactgaa
agactcaggaagattgcacatgtttgttttcatatactgtacttataagt
ccttactagtacgaaggcttgaggctaagactcttcacaggtt

gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtgagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaattggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagaagccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaaactggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagagcatcatcctgagtgaggtaacacaatcacaaa
ggaactcacacaatatgtactcactgataagtggatactagcccaaaacc
taggatacccacgatataagatacaatttcctaaacacatgaaactcaag
aaaaatgaagactgaagtgtggacactatgcccctccttagaagtgggaa
caaaacacccatggaaggagttacagaaacaaagtatggagctgagatga
aaggatggaccatgtagagactgccatatccagggatccaccccataatc
agcttccaaatgctgacaccattgcatacactagcaagattttactgaaa
ggacccagatgtagctgtctcttgtgagactatgccggggcctagcaaca
cagaagtggatgctcacagtcagctaatggatggatcacagggctcccaa
tggaggagctaaagaaagtaccaaggagcttaaaggattcttcaacctta
tagtggaacaacattatgaactaaacagtacccctggagcttcttgactc
tagctgccataatgtatcaaagaatggcctagtcgcatcactgaaagaga
gtccaatgaccgctgacttgtgtgcccagtacaggacctagccatggtga
catgcttcgtaggcatccctgtgctagtgtcgagatgctacg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_67845859_67847025
seq2: B6Ng01-250L14.b_45_1187

seq1  GAATTCACTGTGGCAGTCTTGGGCATGCATTCTCTTCAATGGTTTTGAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTGTGGCAGTCTTGGGCATGCATTCTCTTCAATGGTTTTGAAG  50

seq1  ATCCGGAATGCTTCTCCCCATCTCTTGCAACCCCTTTAGTCTTTCCATTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCGGAATGCTTCTCCCCATCTCTTGCAACCCCTTTAGTCTTTCCATTC  100

seq1  CTGGCTCCCCACCTCTCCCCCTGGGTACAACATTTTGAAAGCCCTTCAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCTCCCCACCTCTCCCCCTGGGTACAACATTTTGAAAGCCCTTCAGG  150

seq1  CACTGAGTTATCAGGTGGGTAGAGGAGGCTCACACTGGGCCTGTAGCAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGAGTTATCAGGTGGGTAGAGGAGGCTCACACTGGGCCTGTAGCAAG  200

seq1  GCAGATACATCATAATCCAAAGTGAACAAAACATTAGAAGAATACCCTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGATACATCATAATCCAAAGTGAACAAAACATTAGAAGAATACCCTTG  250

seq1  GGCTTCCTAAGAAAATCTAATCTGGGATAGACTTCTTACCTGAGATTCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTCCTAAGAAAATCTAATCTGGGATAGACTTCTTACCTGAGATTCCT  300

seq1  GGGGAGGGATAGTGGTGTTCTAGTTTAAATTATGTATGAGAGAATACTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAGGGATAGTGGTGTTCTAGTTTAAATTATGTATGAGAGAATACTAA  350

seq1  TATCTTTGTGGCACTTTGGGACTTTAAATTCATTGATCTGGGGGGAATCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTTTGTGGCACTTTGGGACTTTAAATTCATTGATCTGGGGGGAATCT  400

seq1  TTGGACATCTGGTGTTTTGTTTTATTGTTTTGTTTCTTAACAAAGCTCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGACATCTGGTGTTTTGTTTTATTGTTTTGTTTCTTAACAAAGCTCCA  450

seq1  GGTTTGTTTCTGAGGCACAGCCAGAACTAAAAATTAATGATCTCACTTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTGTTTCTGAGGCACAGCCAGAACTAAAAATTAATGATCTCACTTAA  500

seq1  AACAGGCTCCAAAAGCTTTCCAGATATCAGTCCCAATCAGGCATTGCAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGGCTCCAAAAGCTTTCCAGATATCAGTCCCAATCAGGCATTGCAGT  550

seq1  TACTGCTGAACTACAAGACCATCTTCATCTTGGAGAGAAAGATTTAAAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGCTGAACTACAAGACCATCTTCATCTTGGAGAGAAAGATTTAAAAA  600

seq1  AAAAAATTATGGCATTTAGTTGTTTGGCTGGGGCATGTCAAGGCTCATGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAATTATGGCATTTAGTTGTTTGGCTGGGGCATGTCAAGGCTCATGT  650

seq1  GTGGTCAGATGGTGATTGTAAGAGTTGCTTTCATGATTCTCTCCTGCCAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTCAGATGGTGATTGTAAGAGTTGCTTTCATGATTCTCTCCTGCCAT  700

seq1  GCTGATCTCAAGAATTAAATCCAGTTTGTCAAGCTTCCCTGCTGAGCCAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGATCTCAAGAATTAAATCCAGTTTGTCAAGCTTCCCTGCTGAGCCAA  750

seq1  TTTACTGTCCCCGCAAAGAATCTTAAAAAACAGAAGGTTGCTCATTTCAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACTGTCCCCGCAAAGAATCTTAAAAAACAGAAGGTTGCTCATTTCAT  800

seq1  AGTCATGTGTCCTTGAGGAAGGCCTTTTGGTTGAATGTTGTGGCCATGAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCATGTGTCCTTGAGGAAGGCCTTTTGGTTGAATGTTGTGGCCATGAT  850

seq1  TCTTGTGACTACTGCTAAGAGGGGTTCTAGGCCATGTGTGTTTTCTCTGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TCTTGTGACTACTGCTAAGAGGGGTTCTAGGCCATGTGTGTTTTCTCTG-  899

seq1  AAAGAGAGTGGAACCTACCAGGACAGAGGGACATAGCTCACTCTAATGGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGAGTGGAACCTACCAGGACAGAGGGACATAGCTCACTCTAATGGT  949

seq1  GACCATGCCTCTGAATTTAAATTTCTTCCTGACTTATTTTCAAAACCTCC  1000
      ||||||||||||| |||| ||||||||||||||||||||   ||||||||
seq2  GACCATGCCTCTGGATTTTAATTTCTTCCTGACTTATTT--CAAACCTCC  997

seq1  TCCATGGAAAAGCCCAAGCCATTTAAATAATCCTTATCGTGGGTCATTTT  1050
      | ||||| ||||||| |||||||||||||   ||||||||||||||||||
seq2  T-CATGG-AAAGCCC-AGCCATTTAAATA--TCTTATCGTGGGTCATTTT  1042

seq1  GGACTGAAAGAACCTTCAGGAAGAATTTGCACCAATGTTTTGTTTTCATA  1100
      |||||||||||    |||||||||  ||||||  ||| ||||||||||||
seq2  GGACTGAAAGA---CTCAGGAAGA--TTGCAC--ATG-TTTGTTTTCATA  1084

seq1  TACTGTACCTGTATAGTCCCTTACTTAGTACAGAAAGCTCTGAAAGCCAA  1150
      |||||||| | || ||| |||||| |||||| ||| ||| ||  || |  
seq2  TACTGTACTTATA-AGT-CCTTAC-TAGTAC-GAAGGCT-TG--AGGC-T  1126

seq1  AAGACTCTTCACAGGTT  1167
      |||||||||||||||||
seq2  AAGACTCTTCACAGGTT  1143


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