BAC Information

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BAC

Clone NameB6Ng01-250M12
Chromosome9 (Build37)
Map Location 4,776,372 - 4,777,455
singlet/doubletsinglet
Overlap geneGria4
Upstream geneGucy1a2, LOC100039236, LOC384912, LOC100039253, Aasdhppt, Kbtbd3, LOC664860, 8430410K20Rik
Downstream geneEG664889, Casp1, Casp4, Casp12
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-250M12.bB6Ng01-250M12.g
ACCGA058230GA058231
length1,0141,087
definitionB6Ng01-250M12.b B6Ng01-250M12.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctgcactaaagccatctagccctgggcattttttggttgagaggc
ttttaatgatgtcttctatttccttatggaatatagaactgttttagata
gtttacctgcccttgatttaactttggtatatggtatatctctagaaaac
cattcatttcatctagattttccagttttgttgagtagaggcttttgagg
taggattttaaaaatttcctcagttcctgttgttttgtcttccttttcat
ttctgattttgttaatttggatactgtctctgggctctttagttagtttg
gcaaggggtttatctactttctttctatcaaacaaccagctttttgtttt
attgattctttgtactgttctctttgtttctatttggttgatttcctccc
tgagtttgactatttactgccttctattccttttgtgtgtgtttgctcct
ttttgttctagagctcttaggtatgctattaagttgctagtgtaagatct
gtctaatttctttaccagggcactcagtgaattttcctcctaacactgct
ttccttctgtcccatatatttgggtatagtatgtcaacactttcattaaa
ttccaggaagtctttaatttatttctttatttcttccctgaacaagttat
cattgagtagagagttgttcagtatcaccaacagaataaaagatttagaa
gagagaatctctggtgtagaagataacatagaagagattgacacaactgt
catgaaaattcaaaacataaaaatctcctaatccaaagtatccaggaaat
tcaggacacaattaaaagaccaagtttaagaataatccgaatagaggaga
gtgaagattcccagctcaaatgaccttaaaatgtcttcaaaaaatcactg
aagaaaactttcccaacccaaagacagagatggctgtaaagtacagaagc
ctatagaacaccaaataaatgggaccagaagaagaaaatcctcttatcac
atattatcaaacat
gaattcatcacccttaagcatacttttgcttttttcatggtttaaactta
tgtttgtgctttactttgataagtattgcttataaatgtttcagtttctt
aaatatctagcatatgttggtgagtggaaaagtaggctgttttgggttgc
aattttattagaaccatgatatatacaaaagatggaaaaatctaaaatgc
tataagaattctgttttttaacaatattttatattttatttcatacattt
ctgaatctgtcacttgtttagaaagagtgtttgcacttgatttagttgat
aatatctaaataaaagaaagtattttttttaacattcacactaaatattg
agttcatctttttgtacccacaagggaaaagatacattagactctaattc
atctaattattagagatatttcaagatatgtttgccagtatcagactgta
gtgaaagaatgcctcgctcacttagcagttaccataggaatgtttttgct
tagacacatcatccatttcaaaatgtgaatagcaggatttgtgtgtggta
ttgtggaccttgaagatgcttggtaagttctacaccccagccaaaaccct
cattaatgaaatgaagttattgttgttgatatttgctgactttagttctt
gttgttaaaatgtcattgattatactattttctttgcctattgagtattg
taactttctaacgatccaagatagactgatatattgtttgcacgttttag
tacagccattgaaagagatgatacggtatggacacctagttgcttatgat
agggagttgtttgtgactacccagctagttgtccctccactgtgctctgg
ccccatgctactttgagattatatttttgtaaaatgtttccattgggttt
tctaacccttttggaataagggctcccttgatgaaaagataatatggaat
ggagaattgaattcctcatggttgaaaaatagtactacattaggttaata
caatagttgataagtaaaacaaaattagtatttgtcagatgctgtgacca
ttgtagctgaggtcatccaagggatgtgaaagcaagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_4776372_4777455
seq2: B6Ng01-250M12.g_68_1154 (reverse)

seq1  CCTTGCTTTTCACAT-CCTGTGATGACCTCAGCTACAATGGTCACAGCAT  49
      |||||| |||||||| |||  |||||||||||||||||||||||||||||
seq2  CCTTGC-TTTCACATCCCTTGGATGACCTCAGCTACAATGGTCACAGCAT  49

seq1  CTGACAAAATACTAATTTTGTTTTACTTATCAACTA-TGTATTAA-CTAA  97
      ||||| |||||||||||||||||||||||||||||| |||||||| ||||
seq2  CTGAC-AAATACTAATTTTGTTTTACTTATCAACTATTGTATTAACCTAA  98

seq1  TGTAGTACTATTTTTCAACCATGAGGAATTCAA-TCTCCATTCCATATTA  146
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TGTAGTACTATTTTTCAACCATGAGGAATTCAATTCTCCATTCCATATTA  148

seq1  TCCTTTCATC-AGGGAGCCCTTATTCCAAAAGGGTTAGAAAACCCAATGG  195
      || ||||||| |||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTCATCAAGGGAGCCCTTATTCCAAAAGGGTTAGAAAACCCAATGG  198

seq1  AAACATTTTACAAAAATATAATCTCAAAGTAGCATGGGGCCAGAGCACAG  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATTTTACAAAAATATAATCTCAAAGTAGCATGGGGCCAGAGCACAG  248

seq1  TGGAGGGACAACTAGCTGGGTAGTCACAAACAACTCCCTATCATAAGCAA  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGGGACAACTAGCTGGGTAGTCACAAACAACTCCCTATCATAAGCAA  298

seq1  CTAGGTGTCCATACCGTATCATCTCTTTCAATGGCTGTACTAAAACGTGC  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGTGTCCATACCGTATCATCTCTTTCAATGGCTGTACTAAAACGTGC  348

seq1  AAACAATATATCAGTCTATCTTGGATCGTTAGAAAGTTACAATACTCAAT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAATATATCAGTCTATCTTGGATCGTTAGAAAGTTACAATACTCAAT  398

seq1  AGGCAAAGAAAATAGTATAATCAATGACATTTTAACAACAAGAACTAAAG  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAAAGAAAATAGTATAATCAATGACATTTTAACAACAAGAACTAAAG  448

seq1  TCAGCAAATATCAACAACAATAACTTCATTTCATTAATGAGGGTTTTGGC  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCAAATATCAACAACAATAACTTCATTTCATTAATGAGGGTTTTGGC  498

seq1  TGGGGTGTAGAACTTACCAAGCATCTTCAAGGTCCACAATACCACACACA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGTGTAGAACTTACCAAGCATCTTCAAGGTCCACAATACCACACACA  548

seq1  AATCCTGCTATTCACATTTTGAAATGGATGATGTGTCTAAGCAAAAACAT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCTGCTATTCACATTTTGAAATGGATGATGTGTCTAAGCAAAAACAT  598

seq1  TCCTATGGTAACTGCTAAGTGAGCGAGGCATTCTTTCACTACAGTCTGAT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTATGGTAACTGCTAAGTGAGCGAGGCATTCTTTCACTACAGTCTGAT  648

seq1  ACTGGCAAACATATCTTGAAATATCTCTAATAATTAGATGAATTAGAGTC  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGCAAACATATCTTGAAATATCTCTAATAATTAGATGAATTAGAGTC  698

seq1  TAATGTATCTTTTCCCTTGTGGGTACAAAAAGATGAACTCAATATTTAGT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGTATCTTTTCCCTTGTGGGTACAAAAAGATGAACTCAATATTTAGT  748

seq1  GTGAATGTTAAAAAAAATACTTTCTTTTATTTAGATATTATCAACTAAAT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAATGTTAAAAAAAATACTTTCTTTTATTTAGATATTATCAACTAAAT  798

seq1  CAAGTGCAAACACTCTTTCTAAACAAGTGACAGATTCAGAAATGTATGAA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTGCAAACACTCTTTCTAAACAAGTGACAGATTCAGAAATGTATGAA  848

seq1  ATAAAATATAAAATATTGTTAAAAAACAGAATTCTTATAGCATTTTAGAT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAATATAAAATATTGTTAAAAAACAGAATTCTTATAGCATTTTAGAT  898

seq1  TTTTCCATCTTTTGTATATATCATGGTTCTAATAAAATTGCAACCCAAAA  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCATCTTTTGTATATATCATGGTTCTAATAAAATTGCAACCCAAAA  948

seq1  CAGCCTACTTTTCCACTCACCAACATATGCTAGATATTTAAGAAACTGAA  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTACTTTTCCACTCACCAACATATGCTAGATATTTAAGAAACTGAA  998

seq1  ACATTTATAAGCAATACTTATCAAAGTAAAGCACAAACATAAGTTTAAAC  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTATAAGCAATACTTATCAAAGTAAAGCACAAACATAAGTTTAAAC  1048

seq1  CATGAAAAAAGCAAAAGTATGCTTAAGGGTGATGAATTC  1084
      |||||||||||||||||||||||||||||||||||||||
seq2  CATGAAAAAAGCAAAAGTATGCTTAAGGGTGATGAATTC  1087