BAC Information

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BAC

Clone NameB6Ng01-253F01
Chromosome9 (Build37)
Map Location 89,215,563 - 89,357,420
singlet/doubletdoublet
Overlap genenone
Upstream geneNt5e, Snx14, LOC100039601, Syncrip, 2810026P18Rik, 4930422I07Rik, EG547109, LOC100039707, LOC100039721, Bcl2a1d, LOC100039674, EG666731, LOC100039741, Bcl2a1a, LOC100039689, EG666747, LOC100039714, 4930579C12Rik, Bcl2a1b, Mthfs
Downstream geneAF529169, Tmed3, B230218L05Rik, Rasgrf1, Ctsh, Morf4l1, LOC621414, Adamts7, Tbc1d2b, LOC100039777
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-253F01.bB6Ng01-253F01.g
ACCGA060085GA060086
length1,0641,121
definitionB6Ng01-253F01.b B6Ng01-253F01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(89,215,563 - 89,216,611)(89,356,297 - 89,357,420)
sequence
gaattcttttagatactgccttcagtaagatgaaaacaccttgtcttaga
cacagcacatgacctttataccaaggccagcacttggtttaaagagcttt
gtagacttggacccttgcctctgtctcattctggtatccttttcaaggat
tacctcctagtctaggctgacacaaggacatgcaatgcaggccagataag
aggagtgattaaggcatacttacaccaaaaacgtatctgatatttctttg
aaattaaaatcgcataggacattctatacttttattttctatacctgcta
cctcttctatggccacatagacatcaaactccagtaatctatgagaatac
ctctgttcttcttattagtaggcagtgtggttgtaggattagattctcac
tgacatccacctcagagaagagagagatacagcagtcccatgttactgtt
tgatgacagatgataggagtaaatgactcagtctcttaactgcttggtga
ctctctggagatgtgatgataattgcagaagcaaaaatcaatgtagagac
tccattagaatggatctccaagtatgtgtaaggagagaaatctctgctgt
tctttggaggatctgtagtgtgatggagaaataaagattattattattat
tatttattaggtattttcctcatttacattttcaatgctatcccaaaagg
tcccccatacccacccccccaatcccctacccaccccactcccccttttt
tggccctggcgttcccctgtactggggcatataaagtttgcaagtccaat
gggcctctctttgcagtgatggccgacttaggccatcttttgatacatat
ggcagctaaaggacaagagctcccgggtactggttagttcatattgttgt
tccacctatagggttgccagatccttttagctccttgcgtaatttctcta
gctcctccatgaggggccgttgtgatcccatccaataactgactgggaat
catccaattcttgtgtttgctatgccctcaggtatagtcttcacaagaga
aagcctataactcg
gaattccttatgtgtccatacatcaaaactgcaatcctgctttaaaggaa
acaatgcagaacgaagtcctaatattaccctctaatactaatatggatgc
tcatggtatctttcatagaattctctaatatcagtcagctctcaattgtt
tctttctgaactgaaaccataaaactctcctgcaaacacattgccactag
attacctgacattttgactcatcaaacatcaccaggctgctcaaatatga
attataaatcatcttccagatgactggatgggcagtgtcaaacagctgct
ttcacagctaggaacaggacccaggttggtggctgcctcacctcagcagc
tatgactcagggacacaacagggaaagcagtcaggatgcaaaaaaaagca
gagcaggagcctccttgaagacagagcagtgtttcttgggagaggtaaag
tgttctgtgacatttgaggtgacaccagccaggatgaggggctgtacaga
tggcctcccaaccttcacgctttcttttttctacactgcagtctccaagg
gaggattaattgctttcctctgagattagaatcaacagatgttgctgatt
taagacttgatgtaactggaagagtgtactgtgaatagcataaaagctag
gcttttctgtctctttttcctcctcctccctctcccctaccctgtacctc
ttctcctcaccaaagtgaagttaaggaagccttcagaaataagccctggt
ttccattttataggttcacatgcactctcttatttcaaacaggcattgct
gtgtcgctgctgatgctaactgcctctaggattccttgggttttcagctt
gttgcagaaaacaggccactgttgccagagttggtactgacatcaggaaa
tgttgacccttctcagctacacatagtgaacattttcatgcaggaatctt
tgctagagtgatggatgtgacatctgccctcctgtgtgtatctcatgcaa
cgagaaagagaaagcgagcagaatctgggcactagtaaatgaattgagcc
acttctacaaagaaggctaacagaaaaaccaagccaagcttcttccgttc
ctcttcaacagtctgtcttct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_89215563_89216611
seq2: B6Ng01-253F01.b_47_1110

seq1  GAATTCTTTTAGATACTGCCTTCAGTAAGATGAAAACACCTTGTCTTAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTAGATACTGCCTTCAGTAAGATGAAAACACCTTGTCTTAGA  50

seq1  CACAGCACATGACCTTTATACCAAGGCCAGCACTTGGTTTAAAGAGCTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGCACATGACCTTTATACCAAGGCCAGCACTTGGTTTAAAGAGCTTT  100

seq1  GTAGACTTGGACCCTTGCCTCTGTCTCATTCTGGTATCCTTTTCAAGGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGACTTGGACCCTTGCCTCTGTCTCATTCTGGTATCCTTTTCAAGGAT  150

seq1  TACCTCCTAGTCTAGGCTGACACAAGGACATGCAATGCAGGCCAGATAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTCCTAGTCTAGGCTGACACAAGGACATGCAATGCAGGCCAGATAAG  200

seq1  AGGAGTGATTAAGGCATACTTACACCAAAAACGTATCTGATATTTCTTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGTGATTAAGGCATACTTACACCAAAAACGTATCTGATATTTCTTTG  250

seq1  AAATTAAAATCGCATAGGACATTCTATACTTTTATTTTCTATACCTGCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTAAAATCGCATAGGACATTCTATACTTTTATTTTCTATACCTGCTA  300

seq1  CCTCTTCTATGGCCACATAGACATCAAACTCCAGTAATCTATGAGAATAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTCTATGGCCACATAGACATCAAACTCCAGTAATCTATGAGAATAC  350

seq1  CTCTGTTCTTCTTATTAGTAGGCAGTGTGGTTGTAGGATTAGATTCTCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTTCTTCTTATTAGTAGGCAGTGTGGTTGTAGGATTAGATTCTCAC  400

seq1  TGACATCCACCTCAGAGAAGAGAGAGATACAGCAGTCCCATGTTACTGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACATCCACCTCAGAGAAGAGAGAGATACAGCAGTCCCATGTTACTGTT  450

seq1  TGATGACAGATGATAGGAGTAAATGACTCAGTCTCTTAACTGCTTGGTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGACAGATGATAGGAGTAAATGACTCAGTCTCTTAACTGCTTGGTGA  500

seq1  CTCTCTGGAGATGTGATGATAATTGCAGAAGCAAAAATCAATGTAGAGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTGGAGATGTGATGATAATTGCAGAAGCAAAAATCAATGTAGAGAC  550

seq1  TCCATTAGAATGGATCTCCAAGTATGTGTAAGGAGAGAAATCTCTGCTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATTAGAATGGATCTCCAAGTATGTGTAAGGAGAGAAATCTCTGCTGT  600

seq1  TCTTTGGAGGATCTGTAGTGTGATGGAGAAATAAAGATTATTATTATTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGGAGGATCTGTAGTGTGATGGAGAAATAAAGATTATTATTATTAT  650

seq1  TATTTATTAGGTATTTTCCTCATTTACATTTTCAATGCTATCCC-AAAGG  699
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TATTTATTAGGTATTTTCCTCATTTACATTTTCAATGCTATCCCAAAAGG  700

seq1  TCCCCCATACCCACCCCCCCAATCCCCTACCCA-CCCACTCCCCC-TTTT  747
      ||||||||||||||||||||||||||||||||| ||||||||||| ||||
seq2  TCCCCCATACCCACCCCCCCAATCCCCTACCCACCCCACTCCCCCTTTTT  750

seq1  TGGCCCTGGCGTTCCCCTGTACTGGGGCATATAAAGTTTGCAAGTCCAAT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCCTGGCGTTCCCCTGTACTGGGGCATATAAAGTTTGCAAGTCCAAT  800

seq1  GGGCCTCTCTTTGCAGTGATGGCCGAC-TAGGCCATCTTTTGATACATAT  846
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  GGGCCTCTCTTTGCAGTGATGGCCGACTTAGGCCATCTTTTGATACATAT  850

seq1  -GCAGCTAAA-GACAAGAGCTCCCGGGTACTGGTTAGTTCATATTGTTGT  894
       ||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  GGCAGCTAAAGGACAAGAGCTCCCGGGTACTGGTTAGTTCATATTGTTGT  900

seq1  TCCACCTATAGGGTTG-CAGTTCCCTTTAGCTCCTTGGGTAATTTCTCTA  943
      |||||||||||||||| ||| ||| |||||||||||| ||||||||||||
seq2  TCCACCTATAGGGTTGCCAGATCCTTTTAGCTCCTTGCGTAATTTCTCTA  950

seq1  GCTCCTCCATTAGGGGCCG-TGTGA-CCCATCCAATAGCTGACTGTG-AT  990
      |||||||||| |||||||| ||||| ||||||||||| ||||||| | ||
seq2  GCTCCTCCATGAGGGGCCGTTGTGATCCCATCCAATAACTGACTGGGAAT  1000

seq1  CATCCACTTC-TGTGTTTGCTAGGCC--CCGGCATAGTC-TCACAAGAGA  1036
      |||||| ||| ||||||||||| |||  | || |||||| ||||||||||
seq2  CATCCAATTCTTGTGTTTGCTATGCCCTCAGGTATAGTCTTCACAAGAGA  1050

seq1  GAG-CTATAACTGG  1049
       || |||||||| |
seq2  AAGCCTATAACTCG  1064

seq1: chr9_89356297_89357420
seq2: B6Ng01-253F01.g_65_1185 (reverse)

seq1  AGAAGACAGACTGTTTAGAAGAAGAAAAGAAGAAGGCTTGGTTTG--TTT  48
      |||||||||||||||  ||||| |||  |||||| |||||| |||  |||
seq2  AGAAGACAGACTGTT--GAAGAGGAACGGAAGAA-GCTTGGCTTGGTTTT  47

seq1  TCTGTTAG-CTTCTTTGTAG-AGTGCTTCAATTTCATTTACTAGTGCCCA  96
      |||||||| ||||||||||| ||||  |||| ||||||||||||||||||
seq2  TCTGTTAGCCTTCTTTGTAGAAGTGGCTCAA-TTCATTTACTAGTGCCCA  96

seq1  GAATTCTTGCTCGCTTTCTCTTTCTCGTTTGCCATGAGATACACACAGGA  146
      | |||| ||||||||||||||||||||||   ||||||||||||||||||
seq2  G-ATTC-TGCTCGCTTTCTCTTTCTCGTT--GCATGAGATACACACAGGA  142

seq1  -GGCAGATGTCACATCCATCACTCTAGCAAAGATTCCTGCATGAAAATGT  195
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAGATGTCACATCCATCACTCTAGCAAAGATTCCTGCATGAAAATGT  192

seq1  TCACTATGTGTAGCTGAGAAGGGTCAACATTCCCTGATGTCAGTACCAAC  245
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TCACTATGTGTAGCTGAGAAGGGTCAACATTTCCTGATGTCAGTACCAAC  242

seq1  TCTGGCAACAGTGGCCTGTTTTCTGCAACAAGCCTGAAAA-CCAAGGAAT  294
      |||||||||||||||||||||||||||||||| ||||||| |||||||||
seq2  TCTGGCAACAGTGGCCTGTTTTCTGCAACAAG-CTGAAAACCCAAGGAAT  291

seq1  CCTAGAGGCAGTTAGCATCAGCAGCGACACAGCAATGCCTGTTTGAAATA  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGAGGCAGTTAGCATCAGCAGCGACACAGCAATGCCTGTTTGAAATA  341

seq1  AGAGAGTGCATGTGAACCTATAAAATGGAAACCAGGGCTTATTTCTGAAG  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGTGCATGTGAACCTATAAAATGGAAACCAGGGCTTATTTCTGAAG  391

seq1  GCTTCCTTAACTTCACTTTGGTGAGGAGAAGAGGTACAGGGTAGGGGAGA  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCCTTAACTTCACTTTGGTGAGGAGAAGAGGTACAGGGTAGGGGAGA  441

seq1  GGGAGGAGGAGGAAAAAGAGACAGAAAAGCCTAGCTTTTATGCTATTCAC  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGAGGAGGAAAAAGAGACAGAAAAGCCTAGCTTTTATGCTATTCAC  491

seq1  AGTACACTCTTCCAGTTACATCAAGTCTTAAATCAGCAACATCTGTTGAT  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACACTCTTCCAGTTACATCAAGTCTTAAATCAGCAACATCTGTTGAT  541

seq1  TCTAATCTCAGAGGAAAGCAATTAATCCTCCCTTGGAGACTGCAGTGTAG  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAATCTCAGAGGAAAGCAATTAATCCTCCCTTGGAGACTGCAGTGTAG  591

seq1  AAAAAAGAAAGCGTGAAGGTTGGGAGGCCATCTGTACAGCCCCTCATCCT  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAGAAAGCGTGAAGGTTGGGAGGCCATCTGTACAGCCCCTCATCCT  641

seq1  GGCTGGTGTCACCTCAAATGTCACAGAACACTTTACCTCTCCCAAGAAAC  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGGTGTCACCTCAAATGTCACAGAACACTTTACCTCTCCCAAGAAAC  691

seq1  ACTGCTCTGTCTTCAAGGAGGCTCCTGCTCTGCTTTTTTTTGCATCCTGA  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCTCTGTCTTCAAGGAGGCTCCTGCTCTGCTTTTTTTTGCATCCTGA  741

seq1  CTGCTTTCCCTGTTGTGTCCCTGAGTCATAGCTGCTGAGGTGAGGCAGCC  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTTCCCTGTTGTGTCCCTGAGTCATAGCTGCTGAGGTGAGGCAGCC  791

seq1  ACCAACCTGGGTCCTGTTCCTAGCTGTGAAAGCAGCTGTTTGACACTGCC  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAACCTGGGTCCTGTTCCTAGCTGTGAAAGCAGCTGTTTGACACTGCC  841

seq1  CATCCAGTCATCTGGAAGATGATTTATAATTCATATTTGAGCAGCCTGGT  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCAGTCATCTGGAAGATGATTTATAATTCATATTTGAGCAGCCTGGT  891

seq1  GATGTTTGATGAGTCAAAATGTCAGGTAATCTAGTGGCAATGTGTTTGCA  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTTTGATGAGTCAAAATGTCAGGTAATCTAGTGGCAATGTGTTTGCA  941

seq1  GGAGAGTTTTATGGTTTCAGTTCAGAAAGAAACAATTGAGAGCTGACTGA  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGTTTTATGGTTTCAGTTCAGAAAGAAACAATTGAGAGCTGACTGA  991

seq1  TATTAGAGAATTCTATGAAAGATACCATGAGCATCCATATTAGTATTAGA  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAGAGAATTCTATGAAAGATACCATGAGCATCCATATTAGTATTAGA  1041

seq1  GGGTAATATTAGGACTTCGTTCTGCATTGTTTCCTTTAAAGCAGGATTGC  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTAATATTAGGACTTCGTTCTGCATTGTTTCCTTTAAAGCAGGATTGC  1091

seq1  AGTTTTGATGTATGGACACATAAGGAATTC  1124
      ||||||||||||||||||||||||||||||
seq2  AGTTTTGATGTATGGACACATAAGGAATTC  1121