BAC Information

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BAC

Clone NameB6Ng01-253F07
Chromosome9 (Build37)
Map Location 73,575,037 - 73,686,611
singlet/doubletdoublet
Overlap geneUnc13c
Upstream geneNedd4, Prtg, LOC100040694, Pygo1, Dyx1c1, EG546143, Ccpg1, LOC100041896, Pigb, Rab27a, 2410004A20Rik, BC003885, EG436081
Downstream geneWdr72, Nr1h2-ps, LOC100040764
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-253F07.bB6Ng01-253F07.g
ACCGA060096GA060097
length1,0791,087
definitionB6Ng01-253F07.b B6Ng01-253F07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(73,685,524 - 73,686,611)(73,575,037 - 73,576,128)
sequence
gaattcaggtcctctgcaagagctatatgtgctttcacctgttaagctag
caccttaacactttcaatagtatttttatcttagtcttaatacatattgc
agttgttcctattctttaaatattagtacactaataacccaatagaacag
agctgaaaaataaggatcagaagggagcgagaatgagaagcctataacaa
gggatgtagctcattgattaaatgcttccctgttcagtgtaaggccctgg
gtttaatctctaataatttgaaaaacaagaacaaaagtaattattaaaag
tctttaacatttaagacttatgcattcagtttgaatatcttcacttacac
atccatgtacagtgctctaactagattttacacacccttgaattatcttc
ctgtgttggtaatacaaacagatgccaagtgtgagttggaatgtagtatg
taaaagagatatggcagccccttctcatctttccaggaaccagagtcagc
aggagatgcagcaaatgacgcaggctttaaaatttatgatacaaccttag
gagccagctgagaggaggaactggcttgggtgctgtggtttccctaagaa
tgagactgggctcttagttcaaggggaattagtgtgacagatgagagtgc
aggcagagtgaatcagctcgagcttggttatgaactaccttccctcccca
tttaccttgggatggttgtgccatctacttaaggaaaatgaggatgaatg
aatcgtccctctgggtccatttattttcatcctagaattatatcaaagaa
acacccttagaatgaaaactcccactgaaaggctagagttggattttgag
aggatttagactgtagtcatttgttctaagtgttcctgaaactgatctta
gctaaggcaaaatggtaatggattatatgacttgagactattgcgcatac
tacctaaacaatactttagagagggaaaatcctatgacttgagcccatga
tgtataaaaatttatcagagtaacaaaatataaggatacctgccttttgt
tttgttgggagaatgtctgcttacctttg
gaattccttcttatgaaatgttgtgacacaacccatccctactacaatct
tatgactacctgccccctgggaagactacaacacaaaatttttttctatt
tcagaaatttgaaaacaacaaacaaacaaacaaacacagagcaaacaaaa
tccagggggaaatgaagcttgaaggactgactagagaatcctctggaaac
acccactgatgtatacatgagacataggtttcttagctcccacgtttatc
attaaatgaacacacctgaggttgttttctttctgtaatccaatgggagc
aactcattctgctcccttttagggaatagtttaaaagcacaaaagatacc
attacctgtagcatggggaattagaatcaaatatcacaattaattgtgaa
gggagtacccaagtaattatcaaagagacaagactgagaacaccttaact
ctacaagacatttccatctccaaagatctataactggcattgtcacaact
aatcttcatgtggtcttttcgaaatgagaaatgtgtgacagcctcacatt
ctccaggcttctgcaaaggctccagggatcatgcctttcttctctgaaac
actctagaatgacccactctcgagtcagatgccatccatacatttcttaa
aactaattttaagtgagcatacagaagattgcattttgttatggcatctt
cccatatcctctgttcagtatgctcccctttgtcctctgctggccccatt
ccttcctgcctgcatcccctctctgcttttctattacacactctccattg
cagtctcttttctcttcgtccttctctctactcttctcctgtgatatctt
ctttctcttttctgtttctaactttgtgaacttacacacaaacatgtaca
cacacatatatacatacacactttaaaatattcattttaagcgacagggc
atcagatgccctggaactggagtaagaggtggtgttgaaccacctgatac
atttgctagaccaagccaggcactacagagcagttagccactcttaatta
ctgctctaggctctctatcttcatattttctttaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_73685524_73686611
seq2: B6Ng01-253F07.b_43_1121 (reverse)

seq1  CAAA-GTAAGCAGACATTTCTCCCAAACAAAACAAAAGCCAGTTAATCTT  49
      |||| ||||||||||| ||||||| ||||||||||||| ||| | ||| |
seq2  CAAAGGTAAGCAGACA-TTCTCCC-AACAAAACAAAAGGCAGGT-ATCCT  47

seq1  TATATTTTGTTACCTTCTTGAATAAATTTTATACATCATGGGCTCAAGGT  99
      |||||||||||||  || |||  || ||||||||||||||||||||| ||
seq2  TATATTTTGTTAC--TC-TGATAAATTTTTATACATCATGGGCTCAA-GT  93

seq1  CATAGGATTTTTCCCTCTCTAAAGTATTGTTTAGGTAGTTATGCGCAATA  149
      ||||||| |||||||||||||||||||||||||||||| |||||||||||
seq2  CATAGGA-TTTTCCCTCTCTAAAGTATTGTTTAGGTAG-TATGCGCAATA  141

seq1  GTCTCCAAGTCATATAATCCATTACCATTTTGCCTTAGCTAAGATCAGTT  199
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCT-CAAGTCATATAATCCATTACCATTTTGCCTTAGCTAAGATCAGTT  190

seq1  TCAGGAACACTTAGAACAAATGACTACAGTCTAAATCCTCTCAAAATCCA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGAACACTTAGAACAAATGACTACAGTCTAAATCCTCTCAAAATCCA  240

seq1  ACTCTAGCCTTTCAGTGGGAGTTTTCATTCTAAGGGTGTTTCTTTGATAT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTAGCCTTTCAGTGGGAGTTTTCATTCTAAGGGTGTTTCTTTGATAT  290

seq1  AATTCTAGGATGAAAATAAATGGACCCAGAGGGACGATTCATTCATCCTC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTAGGATGAAAATAAATGGACCCAGAGGGACGATTCATTCATCCTC  340

seq1  ATTTTCCTTAAGTAGATGGCACAACCATCCCAAGGTAAATGGGGAGGGAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCCTTAAGTAGATGGCACAACCATCCCAAGGTAAATGGGGAGGGAA  390

seq1  GGTAGTTCATAACCAAGCTCGAGCTGATTCACTCTGCCTGCACTCTCATC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGTTCATAACCAAGCTCGAGCTGATTCACTCTGCCTGCACTCTCATC  440

seq1  TGTCACACTAATTCCCCTTGAACTAAGAGCCCAGTCTCATTCTTAGGGAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCACACTAATTCCCCTTGAACTAAGAGCCCAGTCTCATTCTTAGGGAA  490

seq1  ACCACAGCACCCAAGCCAGTTCCTCCTCTCAGCTGGCTCCTAAGGTTGTA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACAGCACCCAAGCCAGTTCCTCCTCTCAGCTGGCTCCTAAGGTTGTA  540

seq1  TCATAAATTTTAAAGCCTGCGTCATTTGCTGCATCTCCTGCTGACTCTGG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAAATTTTAAAGCCTGCGTCATTTGCTGCATCTCCTGCTGACTCTGG  590

seq1  TTCCTGGAAAGATGAGAAGGGGCTGCCATATCTCTTTTACATACTACATT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGGAAAGATGAGAAGGGGCTGCCATATCTCTTTTACATACTACATT  640

seq1  CCAACTCACACTTGGCATCTGTTTGTATTACCAACACAGGAAGATAATTC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACTCACACTTGGCATCTGTTTGTATTACCAACACAGGAAGATAATTC  690

seq1  AAGGGTGTGTAAAATCTAGTTAGAGCACTGTACATGGATGTGTAAGTGAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGTGTGTAAAATCTAGTTAGAGCACTGTACATGGATGTGTAAGTGAA  740

seq1  GATATTCAAACTGAATGCATAAGTCTTAAATGTTAAAGACTTTTAATAAT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATTCAAACTGAATGCATAAGTCTTAAATGTTAAAGACTTTTAATAAT  790

seq1  TACTTTTGTTCTTGTTTTTCAAATTATTAGAGATTAAACCCAGGGCCTTA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTTGTTCTTGTTTTTCAAATTATTAGAGATTAAACCCAGGGCCTTA  840

seq1  CACTGAACAGGGAAGCATTTAATCAATGAGCTACATCCCTTGTTATAGGC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGAACAGGGAAGCATTTAATCAATGAGCTACATCCCTTGTTATAGGC  890

seq1  TTCTCATTCTCGCTCCCTTCTGATCCTTATTTTTCAGCTCTGTTCTATTG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCATTCTCGCTCCCTTCTGATCCTTATTTTTCAGCTCTGTTCTATTG  940

seq1  GGTTATTAGTGTACTAATATTTAAAGAATAGGAACAACTGCAATATGTAT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTATTAGTGTACTAATATTTAAAGAATAGGAACAACTGCAATATGTAT  990

seq1  TAAGACTAAGATAAAAATACTATTGAAAGTGTTAAGGTGCTAGCTTAACA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGACTAAGATAAAAATACTATTGAAAGTGTTAAGGTGCTAGCTTAACA  1040

seq1  GGTGAAAGCACATATAGCTCTTGCAGAGGACCTGAATTC  1088
      |||||||||||||||||||||||||||||||||||||||
seq2  GGTGAAAGCACATATAGCTCTTGCAGAGGACCTGAATTC  1079

seq1: chr9_73575037_73576128
seq2: B6Ng01-253F07.g_61_1147

seq1  GAATTCCTTCTTATGAAATGTTGTGACACAACCCATCCCTACTACAATCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTCTTATGAAATGTTGTGACACAACCCATCCCTACTACAATCT  50

seq1  TATGACTACCTGCCCCCTGGGAAGACTACAACACAAAATTTTTTTCTATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGACTACCTGCCCCCTGGGAAGACTACAACACAAAATTTTTTTCTATT  100

seq1  TCAGAAATTTGAAAACAACAAACAAACAAACAAACACAGAGCAAACAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAAATTTGAAAACAACAAACAAACAAACAAACACAGAGCAAACAAAA  150

seq1  TCCAGGGGGAAATGAAGCTTGAAGGACTGACTAGAGAATCCTCTGGAAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGGGGGAAATGAAGCTTGAAGGACTGACTAGAGAATCCTCTGGAAAC  200

seq1  ACCCACTGATGTATACATGAGACATAGGTTTCTTAGCTCCCACGTTTATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCACTGATGTATACATGAGACATAGGTTTCTTAGCTCCCACGTTTATC  250

seq1  ATTAAATGAACACACCTGAGGTTGTTTTCTTTCTGTAATCCAATGGGAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAATGAACACACCTGAGGTTGTTTTCTTTCTGTAATCCAATGGGAGC  300

seq1  AACTCATTCTGCTCCCTTTTAGGGAATAGTTTAAAAGCACAAAAGATACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCATTCTGCTCCCTTTTAGGGAATAGTTTAAAAGCACAAAAGATACC  350

seq1  ATTACCTGTAGCATGGGGAATTAGAATCAAATATCACAATTAATTGTGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACCTGTAGCATGGGGAATTAGAATCAAATATCACAATTAATTGTGAA  400

seq1  GGGAGTACCCAAGTAATTATCAAAGAGACAAGACTGAGAACACCTTAACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGTACCCAAGTAATTATCAAAGAGACAAGACTGAGAACACCTTAACT  450

seq1  CTACAAGACATTTCCATCTCCAAAGATCTATAACTGGCATTGTCACAACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAAGACATTTCCATCTCCAAAGATCTATAACTGGCATTGTCACAACT  500

seq1  AATCTTCATGTGGTCTTTTCGAAATGAGAAATGTGTGACAGCCTCACATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTTCATGTGGTCTTTTCGAAATGAGAAATGTGTGACAGCCTCACATT  550

seq1  CTCCAGGCTTCTGCAAAGGCTCCAGGGATCATGCCTTTCTTCTCTGAAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGGCTTCTGCAAAGGCTCCAGGGATCATGCCTTTCTTCTCTGAAAC  600

seq1  ACTCTAGAATGACCCACTCTCGAGTCAGATGCCATCCATACATTTCTTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTAGAATGACCCACTCTCGAGTCAGATGCCATCCATACATTTCTTAA  650

seq1  AACTAATTTTAAGTGAGCATACAGAAGATTGCATTTTGTTATGGCATCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAATTTTAAGTGAGCATACAGAAGATTGCATTTTGTTATGGCATCTT  700

seq1  CCCATATCCTCTGTTCAGTATGCTCCCCTTTGTCCTCTGCTGGCCCCATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATATCCTCTGTTCAGTATGCTCCCCTTTGTCCTCTGCTGGCCCCATT  750

seq1  CCTTCCTGCCTGCATCCCCTCTCTGCTTTTCTATTACACACTCTCCATTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCTGCCTGCATCCCCTCTCTGCTTTTCTATTACACACTCTCCATTG  800

seq1  CAGTCTCTTTTCTCTTCGTCCTTCTCTCTACTCTTCTCCTGTGATATCTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCTCTTTTCTCTTCGTCCTTCTCTCTACTCTTCTCCTGTGATATCTT  850

seq1  CTTTCTCTTTTCTGTTTCTAACTTTGTGAACTTACACACAAACATGTACA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTCTTTTCTGTTTCTAACTTTGTGAACTTACACACAAACATGTACA  900

seq1  CACACATATATACATACACACTTAAAAATATTCATTTTAAGCGACAGGGC  950
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  CACACATATATACATACACACTTTAAAATATTCATTTTAAGCGACAGGGC  950

seq1  ATCAGATGCCCTGGAACTGGAGTAAGAGGTGGTGTTGAACCACCTGATAC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGATGCCCTGGAACTGGAGTAAGAGGTGGTGTTGAACCACCTGATAC  1000

seq1  ATTTGCTAGGAACCAAGCCAGGCACTACAAGAGCAGTAAG-CACTCTTAA  1049
      |||||||||  ||||||||||||||||| |||||||| || |||||||||
seq2  ATTTGCTAG--ACCAAGCCAGGCACTAC-AGAGCAGTTAGCCACTCTTAA  1047

seq1  TTACTGCTCTAGCCTTCTCTAATCTTCATATTTTCTTTTAAAA  1092
      |||||||||||| | ||||| ||||||||||||||||| ||| 
seq2  TTACTGCTCTAGGC-TCTCT-ATCTTCATATTTTCTTTAAAA-  1087