BAC Information

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BAC

Clone NameB6Ng01-254I02
Chromosome9 (Build37)
Map Location 39,318,018 - 39,454,342
singlet/doubletdoublet
Overlap geneOlfr957, Olfr958, Olfr959, AW551984, Olfr148, Olfr960, Olfr961
Upstream geneOlfr908, Olfr909, Olfr910, Olfr912, Olfr913, Olfr914, Olfr915, Olfr916, Olfr917, Olfr918, GA_x5J8B7W60AJ-925630-926226, Olfr919, Loh11cr2a, Olfr920, Olfr921, Olfr922, Olfr923, Olfr924, Olfr26, Olfr925-ps1, Olfr926, GA_x5J8B7W60AJ-719102-719883, Olfr928-ps1, GA_x5J8B7W60AJ-703922-704828, Olfr930, GA_x5J8B7W60AJ-666029-666595, Olfr1545-ps1, Olfr932-ps1, Olfr933, Olfr934, Olfr935, Olfr146, EG628171, Olfr937, LOC667260, Olfr938, Olfr939-ps1, GA_x5J8B7W60AJ-540286-540740, Olfr941-ps1, Olfr27, Olfr942-ps1, Olfr943, Olfr944, Olfr144, Olfr945, GA_x5J8B7W60AJ-354484-355428, Olfr947-ps1, Olfr948, LOC667312, Olfr949-ps1, Olfr950-ps1, Olfr951, Olfr952, Olfr953-ps1, Olfr954, Olfr955, Olfr956-ps1, Olfr44
Downstream geneGA_x5J8B7W60AJ-4787-4010, Olfr963, Olfr964-ps1, Olfr149, Olfr965, Olfr966-ps1, Olfr150, Olfr967, Olfr968, Olfr969, Olfr970, Olfr971, Olfr972, Olfr973, LOC100043015, Olfr974, Olfr975, Olfr976, Olfr977-ps1, Olfr978, Olfr979, Olfr980, Olfr981, 1700001J11Rik, Olfr982, Olfr983, Olfr984, Olfr985, 1700030E15Rik, LOC235279, Olfr986, Zfp202, Scn3b, Gramd1b, LOC270148
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-254I02.bB6Ng01-254I02.g
ACCGA060954GA060955
length1,183968
definitionB6Ng01-254I02.b B6Ng01-254I02.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(39,318,018 - 39,319,199)(39,453,384 - 39,454,342)
sequence
gaattccaaatattaagcaattcaaatgttactgaaaatgtattactgtc
tgatttaacaaaaataaattttacctaaaaagaacagtgttccagactta
caaagcaaaatagctaaatgtgtttgctatttgaaaacctatttaaaagt
aatatacgtaattccagacagttagattgtgggtcacccagagtggcagt
ggacttcatcctcggagtccagtgcattttattcaaaataaacaagcatt
cataaaaccccatgactcatgagggtgcgctgtatgtcttcgctgtacac
ttcaggggcctcttcagttgtaaagttttgcttaaagcgtgtccttcatt
tcacatgaattctcttcttcctacaaccttatagaaggcaactttgacat
ctttattcctcagactatagatcaaggggttcagcatgggcacaacaatg
gtataaaatacagaggacactttcccttggtccatggagctgactgatga
tggctgaaggtacatgaatgctagagatccaaagaagacagcaacagcca
agatgtgggagctgcaggtgctgaaggctttggacctgccttcagtggaa
ggaatgcggaggatgctggctatgatgaagatgtaggaactgaggatggt
cagagctgggacagtaatattaaatgaactgaaggacagtcctagtattt
cattgataaatgtattggaacaggattgttccaggagtggtaaaagatca
cagaagtagtggtttatgtcaccagctttgcagaaaagcagtctaagcag
gcagactgtttcccctgtggcacaaatcaagcctacactatacaccccca
ctaccatccaggaacacactttgtagacatggtaacattatatagcaagg
ggttacagatggcaacatagcgatcataagccatgacagccagcatgtga
cactccgaaacagcaaaaacatcaaataagttaaactgagccatgcattc
tgcataagaaatgacactctttcaccatgacaaattttcttcagcatttt
ttggcatgatgacactggactggcagagtcaacgaaagacagatttactg
agaaaagttacatggggggtgttgcaagtgaatagagaaacagatgagca
tgaacatgccaagtcctatgactgtgtaccaca
gaattctgtcaccatagtgtggtttgtcatgtttatggatgaatcagctc
ctgggagtctgtggaaagaaattcttggtgaaatttattgtgtatgtaga
ttagagtttagatcacaggggtggagaaaaaagatgcttatatgtacaga
tagctgttgtaaatattattgcttttcctgatgattgaatgtctttctgt
agttaggtttctaattgtagacaatactccttaaaatttttacccaggag
acaatttccaagccaattgcagatggtttccttcacagtctcacccagaa
aataactcccaaggctagttattttcctctcttcccttctttagaaaaat
gttcaattccatcattccagatgctccattgaggttctagaatgaataaa
aagactctagaaatgagtagtgagtaacaggggtgcatggggtaggataa
ggataagggagagttgggtttaaacataaccagtatacatcatacacaga
tgtgaagttgtctaagaacagattcaattaatgaatgattattttccagg
caagttagcaaccagcatctagtattgaggctaataagaatcagaaacta
cagtaattagaagcaattttacaacagcaaagaatatacttgtaattttt
aagctctaaatgtggacctcattaaaactggaagttgaatgaatacccta
aatctttgttactcagcagcatgaacatgtggactctcctcttttggaca
aaggaggatttgtgattgtacatgggattatcctgtggcttgtataaagg
aaaattgagaaatagcatagtgactgaaggctctgtaagcacttttttta
ttatagcactattgcatgcctgtaatcgtcttttctgaaatagactatac
attctcacatatatacaaatgaacagttacacatccagggctgagagaaa
ggaaaaaaaagaaaggga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_39318018_39319199
seq2: B6Ng01-254I02.b_43_1225

seq1  GAATTCCAAATATTAAGCAATTCAAATGTTACTGAAAATGTATTACTGTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAATATTAAGCAATTCAAATGTTACTGAAAATGTATTACTGTC  50

seq1  TGATTTAACAAAAATAAATTTTACCTAAAAAGAACAGTGTTCCAGACTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTAACAAAAATAAATTTTACCTAAAAAGAACAGTGTTCCAGACTTA  100

seq1  CAAAGCAAAATAGCTAAATGTGTTTGCTATTTGAAAACCTATTTAAAAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGCAAAATAGCTAAATGTGTTTGCTATTTGAAAACCTATTTAAAAGT  150

seq1  AATATACGTAATTCCAGACAGTTAGATTGTGGGTCACCCAGAGTGGCAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATACGTAATTCCAGACAGTTAGATTGTGGGTCACCCAGAGTGGCAGT  200

seq1  GGACTTCATCCTCGGAGTCCAGTGCATTTTATTCAAAATAAACAAGCATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTTCATCCTCGGAGTCCAGTGCATTTTATTCAAAATAAACAAGCATT  250

seq1  CATAAAACCCCATGACTCATGAGGGTGCGCTGTATGTCTTCGCTGTACAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAAACCCCATGACTCATGAGGGTGCGCTGTATGTCTTCGCTGTACAC  300

seq1  TTCAGGGGCCTCTTCAGTTGTAAAGTTTTGCTTAAAGCGTGTCCTTCATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGGGGCCTCTTCAGTTGTAAAGTTTTGCTTAAAGCGTGTCCTTCATT  350

seq1  TCACATGAATTCTCTTCTTCCTACAACCTTATAGAAGGCAACTTTGACAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACATGAATTCTCTTCTTCCTACAACCTTATAGAAGGCAACTTTGACAT  400

seq1  CTTTATTCCTCAGACTATAGATCAAGGGGTTCAGCATGGGCACAACAATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATTCCTCAGACTATAGATCAAGGGGTTCAGCATGGGCACAACAATG  450

seq1  GTATAAAATACAGAGGACACTTTCCCTTGGTCCATGGAGCTGACTGATGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATAAAATACAGAGGACACTTTCCCTTGGTCCATGGAGCTGACTGATGA  500

seq1  TGGCTGAAGGTACATGAATGCTAGAGATCCAAAGAAGACAGCAACAGCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTGAAGGTACATGAATGCTAGAGATCCAAAGAAGACAGCAACAGCCA  550

seq1  AGATGTGGGAGCTGCAGGTGCTGAAGGCTTTGGACCTGCCTTCAGTGGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGTGGGAGCTGCAGGTGCTGAAGGCTTTGGACCTGCCTTCAGTGGAA  600

seq1  GGAATGCGGAGGATGCTGGCTATGATGAAGATGTAGGAACTGAGGATGGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATGCGGAGGATGCTGGCTATGATGAAGATGTAGGAACTGAGGATGGT  650

seq1  CAGAGCTGGGACAGTAATATTAAATGAACTGAAGGACAGTCCTAGTATTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGCTGGGACAGTAATATTAAATGAACTGAAGGACAGTCCTAGTATTT  700

seq1  CATTGATAAATGTATTGGAACAGGATTGTTCCAGGAGTGGTAAAAGATCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGATAAATGTATTGGAACAGGATTGTTCCAGGAGTGGTAAAAGATCA  750

seq1  CAGAAGTAGTGGTTTATGTCACCAGCTTTGCAGAAAAGCAGTCTAAGCAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGTAGTGGTTTATGTCACCAGCTTTGCAGAAAAGCAGTCTAAGCAG  800

seq1  GCAGACTGTTTCCCCTGTGGCACAAATCAAGCCTACACTATACACCCCCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGACTGTTTCCCCTGTGGCACAAATCAAGCCTACACTATACACCCCCA  850

seq1  CTACCATCCAGGAACACACTTTGTAAGACATGGTAACATTATATAGCAAG  900
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  CTACCATCCAGGAACACACTTTGT-AGACATGGTAACATTATATAGCAAG  899

seq1  GGGTTACAGATGGCAACATAGCGATCATAAGCCATGACAGCCAGCATGTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTACAGATGGCAACATAGCGATCATAAGCCATGACAGCCAGCATGTG  949

seq1  ACACTCCGAAACAGCAAAAACATCAAATAAGTAAAACTGAGCCATGCATT  1000
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  ACACTCCGAAACAGCAAAAACATCAAATAAGTTAAACTGAGCCATGCATT  999

seq1  CTGCATAAGAAATGACACTC-TTCACCATGACAAA-TTTCTCCAGCA-TT  1047
      |||||||||||||||||||| |||||||||||||| ||||| ||||| ||
seq2  CTGCATAAGAAATGACACTCTTTCACCATGACAAATTTTCTTCAGCATTT  1049

seq1  TTGGGCATGATGACACTGGACTGGCAGAGGTCAACGAAAGACAGA-TTAC  1096
      || ||||||||||||||||||||||||| |||||||||||||||| ||||
seq2  TTTGGCATGATGACACTGGACTGGCAGA-GTCAACGAAAGACAGATTTAC  1098

seq1  TGAGGAAAAAGTACAT-GGGGGTG-TGCAGGTGAGAAGAGAACAGGATGA  1144
      ||| |||||  ||||| ||||||| |||| ||||  ||||||   |||||
seq2  TGA-GAAAAGTTACATGGGGGGTGTTGCAAGTGAATAGAGAAACAGATGA  1147

seq1  GCATGACCATGCCCAGGTTTCCTATGACTGTG-ACCACA  1182
      |||||| |||||| ||   ||||||||||||| ||||||
seq2  GCATGAACATGCCAAG---TCCTATGACTGTGTACCACA  1183

seq1: chr9_39453384_39454342
seq2: B6Ng01-254I02.g_69_1036 (reverse)

seq1  TCCCTT--CTTTCTCTCCTTTCTCTC-GCCCTGTGTGTGT-ACTGTTCAT  46
      ||||||   ||| | ||||||||||| ||||||  ||||| |||||||||
seq2  TCCCTTTCTTTTTTTTCCTTTCTCTCAGCCCTGGATGTGTAACTGTTCAT  50

seq1  TTGTATATATGTGAG-ATGTATAGTCTATTTCAGAAAAAGACGATTACA-  94
      ||||||||||||||| |||||||||||||||||| |||||||||||||| 
seq2  TTGTATATATGTGAGAATGTATAGTCTATTTCAG-AAAAGACGATTACAG  99

seq1  GCATGCAAATAGTGCTATAAT-AAAAAAGTGCTTACAGAGCCTTCAGTCA  143
      |||||| |||||||||||||| ||||||||||||||||||||||||||||
seq2  GCATGC-AATAGTGCTATAATAAAAAAAGTGCTTACAGAGCCTTCAGTCA  148

seq1  CTATGCTA-TTCTCAATTTTCCTTTATACAAGCCACAGGATAATCCCATG  192
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  CTATGCTATTTCTCAATTTTCCTTTATACAAGCCACAGGATAATCCCATG  198

seq1  TACAATCACAAATCCTCCTTTGTCC-AAAGAGGAGAGTCCACATGTTCAT  241
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TACAATCACAAATCCTCCTTTGTCCAAAAGAGGAGAGTCCACATGTTCAT  248

seq1  GCTGCTGAGTAACAAAGATTTAGGGTATTCATTCAACTTCCAGTTTTAAT  291
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCTGAGTAACAAAGATTTAGGGTATTCATTCAACTTCCAGTTTTAAT  298

seq1  GAGGTCCACATTTAGAGCTT-AAAATTACAAGTATATTCTTTGCTGTTGT  340
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  GAGGTCCACATTTAGAGCTTAAAAATTACAAGTATATTCTTTGCTGTTGT  348

seq1  -AAATTGCTTCTAATTACTGTAGTTTCTGATTCTTATTAGCCTCAATACT  389
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTGCTTCTAATTACTGTAGTTTCTGATTCTTATTAGCCTCAATACT  398

seq1  AGATGCTGGTTGCTAACTTGCCTGGAAAATAATCATTCATTAATTGAATC  439
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGCTGGTTGCTAACTTGCCTGGAAAATAATCATTCATTAATTGAATC  448

seq1  TGTTCTTAGACAACTTCACATCTGTGTATGATGTATACTGGTTATGTTTA  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTTAGACAACTTCACATCTGTGTATGATGTATACTGGTTATGTTTA  498

seq1  AACCCAACTCTCCCTTATCCTTATCCTACCCCATGCACCCCTGTTACTCA  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCAACTCTCCCTTATCCTTATCCTACCCCATGCACCCCTGTTACTCA  548

seq1  CTACTCATTTCTAGAGTCTTTTTATTCATTCTAGAACCTCAATGGAGCAT  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTCATTTCTAGAGTCTTTTTATTCATTCTAGAACCTCAATGGAGCAT  598

seq1  CTGGAATGATGGAATTGAACATTTTTCTAAAGAAGGGAAGAGAGGAAAAT  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAATGATGGAATTGAACATTTTTCTAAAGAAGGGAAGAGAGGAAAAT  648

seq1  AACTAGCCTTGGGAGTTATTTTCTGGGTGAGACTGTGAAGGAAACCATCT  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAGCCTTGGGAGTTATTTTCTGGGTGAGACTGTGAAGGAAACCATCT  698

seq1  GCAATTGGCTTGGAAATTGTCTCCTGGGTAAAAATTTTAAGGAGTATTGT  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATTGGCTTGGAAATTGTCTCCTGGGTAAAAATTTTAAGGAGTATTGT  748

seq1  CTACAATTAGAAACCTAACTACAGAAAGACATTCAATCATCAGGAAAAGC  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAATTAGAAACCTAACTACAGAAAGACATTCAATCATCAGGAAAAGC  798

seq1  AATAATATTTACAACAGCTATCTGTACATATAAGCATCTTTTTTCTCCAC  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATATTTACAACAGCTATCTGTACATATAAGCATCTTTTTTCTCCAC  848

seq1  CCCTGTGATCTAAACTCTAATCTACATACACAATAAATTTCACCAAGAAT  889
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGTGATCTAAACTCTAATCTACATACACAATAAATTTCACCAAGAAT  898

seq1  TTCTTTCCACAGACTCCCAGGAGCTGATTCATCCATAAACATGACAAACC  939
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTCCACAGACTCCCAGGAGCTGATTCATCCATAAACATGACAAACC  948

seq1  ACACTATGGTGACAGAATTC  959
      ||||||||||||||||||||
seq2  ACACTATGGTGACAGAATTC  968