BAC Information

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BAC

Clone NameB6Ng01-254K18
Chromosome9 (Build37)
Map Location 67,876,313 - 67,877,470
singlet/doubletsinglet
Overlap genenone
Upstream geneTpm1, Tln2, LOC100041390, LOC100040253, EG640799, LOC665794, 3300001A09Rik, EG244911, Vps13c
Downstream geneLOC100041451, Rora, 9530091C08Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-254K18.bB6Ng01-254K18.g
ACCGA061077GA061078
length1,1651,177
definitionB6Ng01-254K18.b B6Ng01-254K18.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctgacatctattcttgcctttatgggctctttcccacatgcggtg
cccataaactcacacacacacacacacacacacacacacaaatacacctg
aattaaaaaacaataaaccttagaaaagacaacagctgatgttcattgtt
gagtgctgaccctaagtccaacacattttaggagagtccccaggatgaac
tcatccaattcccagaggagctcttaggagcttggcacaacagttatctt
cccacaagggttaagttgcccaaatagcagctggtggagctgcagagtgg
gctgtgctgcctctggggggtgattctgatctctctcatcctggcttgtg
ggcgtgaatgacgtcaaggatgtgtggaagatgtgtaaccaccctgtggt
tggtgtgtgtgtgattatcctgtggtatttttatctcaggttctgtgaac
ctgaagcccgtgcctttctacccagcccctgaattcagccttctccatcc
cctgtctccttccttttcaccgctcctgtcttagactgccttagatcttt
gatttgtgaacaaccaatttcaccggctaatttacacatgagcattaaag
attgatgctggcctaatgcaattgtctcaatctgctgacattaggcagca
tcttctcctgtccccactagcctcattgctcagtgaggtgtcccagtgag
gagcaaacttcaggagctggggagatggcttacctgggaatatgtttgtt
gcataaggacccaaggccagatcctcagcacctatggagcaaagccaggc
atgggtctgtgtatcctgtcagcttggtgttggggagcagggactgggct
ctgtagtctagctgaattggtgagctctaggttcagtgtgaggtcctgtc
tcaaaaactcagatgggagagtgactaagatgacaccagacatagccctc
ccttaagcatgcacttaaatatatgtttctacgtatatgcacacacggat
gcacatacaccactccatcacctagccattttctatctacaatttctttt
tttcacatatggaagaataatcacagggattccctattttttttaattct
tgtcagtatcagagaaccatcctctcttttataatcattctggtaggtct
ctatgttgtttgaag
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtgagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaattggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagaagccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaaactggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagagcatcatcctgagtgaggtaacacaatcacaaa
ggaactcacacaatatgtactcactgataagtggatactagcccaaaacc
taggatacccacgatataaagatacaattttcctaaacacatgaaactca
agaaaaatgaagactgaagtgtggacactatgcccctccttagaagtggg
aacaaaacacccatggaaggagttacagaaacaaagtatggagctgatat
gaaaggatggaccatgtagagactgccatatccagggatccaccccataa
tcagcttccaaaatgctgacaccatttgccatacactagcaagatttaac
tgaaagggacccagatgtagctgtctctttgtgagactatggccggggcc
tagcaaacacagaagttgatgcttcacagtcagctaatggatggatcaca
gggcctccctaatgggaggagcttaatagaagtacctaggagcttaaagg
gaatcttcaccctttataggtgacaaccattatgacttaccagtacccct
tgaagctctcttgacctctactgcataatgtaatcaagatggccttagct
ggcatcattggaaagtaggcccattggaaccccgacttttgtgttcctgt
tacacgggtatcccaggttccaaattg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_67876313_67877470
seq2: B6Ng01-254K18.b_44_1208

seq1  GAATTCTGACATCTATTCTTGCCTTTATGGGCTCTTTCCCACATGCGGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGACATCTATTCTTGCCTTTATGGGCTCTTTCCCACATGCGGTG  50

seq1  CCCATAAACTCACACACACACACACACACACACACACACAAATACACCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATAAACTCACACACACACACACACACACACACACACAAATACACCTG  100

seq1  AATTAAAAAACAATAAACCTTAGAAAAGACAACAGCTGATGTTCATTGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAAAAAACAATAAACCTTAGAAAAGACAACAGCTGATGTTCATTGTT  150

seq1  GAGTGCTGACCCTAAGTCCAACACATTTTAGGAGAGTCCCCAGGATGAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGCTGACCCTAAGTCCAACACATTTTAGGAGAGTCCCCAGGATGAAC  200

seq1  TCATCCAATTCCCAGAGGAGCTCTTAGGAGCTTGGCACAACAGTTATCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCCAATTCCCAGAGGAGCTCTTAGGAGCTTGGCACAACAGTTATCTT  250

seq1  CCCACAAGGGTTAAGTTGCCCAAATAGCAGCTGGTGGAGCTGCAGAGTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACAAGGGTTAAGTTGCCCAAATAGCAGCTGGTGGAGCTGCAGAGTGG  300

seq1  GCTGTGCTGCCTCTGGGGGGTGATTCTGATCTCTCTCATCCTGGCTTGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTGCTGCCTCTGGGGGGTGATTCTGATCTCTCTCATCCTGGCTTGTG  350

seq1  GGCGTGAATGACGTCAAGGATGTGTGGAAGATGTGTAACCACCCTGTGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGTGAATGACGTCAAGGATGTGTGGAAGATGTGTAACCACCCTGTGGT  400

seq1  TGGTGTGTGTGTGATTATCCTGTGGTATTTTTATCTCAGGTTCTGTGAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGTGTGTGTGATTATCCTGTGGTATTTTTATCTCAGGTTCTGTGAAC  450

seq1  CTGAAGCCCGTGCCTTTCTACCCAGCCCCTGAATTCAGCCTTCTCCATCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAGCCCGTGCCTTTCTACCCAGCCCCTGAATTCAGCCTTCTCCATCC  500

seq1  CCTGTCTCCTTCCTTTTCACCGCTCCTGTCTTAGACTGCCTTAGATCTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTCTCCTTCCTTTTCACCGCTCCTGTCTTAGACTGCCTTAGATCTTT  550

seq1  GATTTGTGAACAACCAATTTCACCGGCTAATTTACACATGAGCATTAAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTGTGAACAACCAATTTCACCGGCTAATTTACACATGAGCATTAAAG  600

seq1  ATTGATGCTGGCCTAATGCAATTGTCTCAATCTGCTGACATTAGGCAGCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGATGCTGGCCTAATGCAATTGTCTCAATCTGCTGACATTAGGCAGCA  650

seq1  TCTTCTCCTGTCCCCACTAGCCTCATTGCTCAGTGAGGTGTCCCAGTGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTCCTGTCCCCACTAGCCTCATTGCTCAGTGAGGTGTCCCAGTGAG  700

seq1  GAGCAAACTTCAGGAGCTGGGGAGATGGCTTACCTGGGAATATGTTTGTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAAACTTCAGGAGCTGGGGAGATGGCTTACCTGGGAATATGTTTGTT  750

seq1  GCATAAGGACCCAAGGCCAGATCCTCAGCACCTATGGAGCAAAGCCAGGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATAAGGACCCAAGGCCAGATCCTCAGCACCTATGGAGCAAAGCCAGGC  800

seq1  ATGGGTCTGTGTAT-CTGTCAGCTTGGTGTTGGGGAGCAGGGACTGGGGC  849
      |||||||||||||| |||||||||||||||||||||||||||||| ||||
seq2  ATGGGTCTGTGTATCCTGTCAGCTTGGTGTTGGGGAGCAGGGACT-GGGC  849

seq1  TCTGTAGTCTAGCTGAATTGGTGAGCTCTAGGTTCAGTGTGAGGTCCTGT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTAGTCTAGCTGAATTGGTGAGCTCTAGGTTCAGTGTGAGGTCCTGT  899

seq1  CTCAAAAACTCAGAT-GGAGAGTGACTAAGGATGACACCAGACATTAGCC  948
      ||||||||||||||| ||||||||||||| |||||||||||||||   ||
seq2  CTCAAAAACTCAGATGGGAGAGTGACTAA-GATGACACCAGACATAGCCC  948

seq1  TCCCTT-AGCATGCACATAAATATATG-TTCTACGTATATGCACACACGG  996
      |||||| ||||||||| |||||||||| ||||||||||||||||||||||
seq2  TCCCTTAAGCATGCACTTAAATATATGTTTCTACGTATATGCACACACGG  998

seq1  ATGCACATACA-CACTTCATCACCTAGCTA-TTTCTTTCATAC-ATTTCT  1043
      ||||||||||| |||| ||||||||||| | ||||| || ||| ||||||
seq2  ATGCACATACACCACTCCATCACCTAGCCATTTTCTATC-TACAATTTCT  1047

seq1  ATTTTTCACATATGGAAG-ATAATCCACAGGGATTCTTTTTTTTTTTTTT  1092
       ||||||||||||||||| ||||| |||||||||||    | ||||||||
seq2  TTTTTTCACATATGGAAGAATAAT-CACAGGGATTC--CCTATTTTTTTT  1094

seq1  TAATCTTGTCAGTTTCAGAAGAC---ACTCTC-TTTATAATCATCCTGGT  1138
       | |||||||||| |||||  ||    ||||| ||||||||||| |||||
seq2  AATTCTTGTCAGTATCAGAGAACCATCCTCTCTTTTATAATCATTCTGGT  1144

seq1  AGGTCTCCATG-TGTTTGAAG  1158
      ||||||| ||| |||||||||
seq2  AGGTCTCTATGTTGTTTGAAG  1165