BAC Information

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BAC

Clone NameB6Ng01-254O06
Chromosome9 (Build37)
Map Location 52,346,103 - 52,529,264
singlet/doubletdoublet
Overlap geneAI593442, Gm1715
Upstream geneLOC640374, LOC668070, Arhgap20, LOC629554, LOC100043409, Fdx1, EG629557, Rdx, 9830163H01Rik, Zc3h12c, LOC100042876
Downstream geneDdx10, Exph5, Kdelc2, 4930550C14Rik, Atm, Npat, Acat1, Cul5, Rab39, EG434404
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-254O06.bB6Ng01-254O06.g
ACCGA061238GA061239
length974338
definitionB6Ng01-254O06.b B6Ng01-254O06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(52,528,290 - 52,529,264)(52,346,103 - 52,346,440)
sequence
gaattcatagttgggacaagatgtgttatctgccttttccacagtctatg
aagaaattggcatggggcagctcatttgataaaagaatgacgtgatggtg
atataaagctatctaggtcataagtcatgtgcttggggtcacatggagtg
gcccagaattagagaacaagaaactaaaagtttgggacaatatataagaa
ataaaaaagagcttcaagcctaaatgacatcaaaggtagttctgcttgta
aagactcatcagaattccttttctgggaaatgctaaatgaatgcagactt
tataaagtcttctcactggcaatgaaatgctattccattgttttacttct
ttgaggggagatgcatagagaggagatggagattggaacagaccaacatg
gaggccctattcttctgaggtcggaaccctattagtccagggttcggacc
tcagaggagccaagctggcattttgagaagaagcagatagacaggtagaa
atctgggaggctgaggcaataactcgattggtaaaaataattgatgcaca
agcatgaggacttgcatatgatcaccagaactgagggaaaaggccaagca
tgctagcatgtgtttgcaatcccacccctgggggtgtggagatatgaaaa
gcccaggaactcactggccagcccgcctaatacacaggtgatttccaggc
cagtgagagatcctgtgtgtataagcagggtggacagctcctgaggaaca
gtatccatggttgtcctctggcctccacaggtccatccacataagcagcc
tctggccggggaaggtgcatggtgcaaggactcatctttcatcacctttg
ccccacagcagtatctcaatcccatcttttgtgctgaaggaacttgttcc
tgattcatttttgatttgctgtctggactcttgtctaatgctttctttgc
tcggtgtgtgtgtgtgtgtgtgtg
tcacatgtctcacaaggactactgtctcagataatagagatcctgtttta
gataacagggctccttaagatgagctagtccccattttaaaaggtgatac
cacgagtcaagatgtgcgtgcacatatatgttgaactctagatatgttct
gaggagtaattcaaactgactgaaatttggtcttgatccactgagcagta
acagttctttgagaatacagccatccatccccttactcctttttatttca
tgtagccatagttaagcttttgggcattgaactgtttttgtttgtttgtt
tgtttgtttgtttggttggttggttggtttggtttggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_52528290_52529264
seq2: B6Ng01-254O06.b_53_1026 (reverse)

seq1  CACACACACACACACACACACCGAGCAAAAGAAAGCATTAGACAAGAGTC  50
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  CACACACACACACACACACACCGAGC-AAAGAAAGCATTAGACAAGAGTC  49

seq1  CAGACAGCAAATCAAAAATGAATCAGGAACAAGTTCCTTCAGCACAAAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACAGCAAATCAAAAATGAATCAGGAACAAGTTCCTTCAGCACAAAAG  99

seq1  ATGGGATTGAGATACTGCTGTGGGGCAAAGGTGATGAAAGATGAGTCCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGATTGAGATACTGCTGTGGGGCAAAGGTGATGAAAGATGAGTCCTT  149

seq1  GCACCATGCACCTTCCCCGGCCAGAGGCTGCTTATGTGGATGGACCTGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCATGCACCTTCCCCGGCCAGAGGCTGCTTATGTGGATGGACCTGTG  199

seq1  GAGGCCAGAGGACAACCATGGATACTGTTCCTCAGGAGCTGTCCACCCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCCAGAGGACAACCATGGATACTGTTCCTCAGGAGCTGTCCACCCTG  249

seq1  CTTATACACACAGGATCTCTCACTGGCCTGGAAATCACCTGTGTATTAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATACACACAGGATCTCTCACTGGCCTGGAAATCACCTGTGTATTAGG  299

seq1  CGGGCTGGCCAGTGAGTTCCTGGGCTTTTCATATCTCCACACCCCCAGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGCTGGCCAGTGAGTTCCTGGGCTTTTCATATCTCCACACCCCCAGGG  349

seq1  GTGGGATTGCAAACACATGCTAGCATGCTTGGCCTTTTCCCTCAGTTCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGATTGCAAACACATGCTAGCATGCTTGGCCTTTTCCCTCAGTTCTG  399

seq1  GTGATCATATGCAAGTCCTCATGCTTGTGCATCAATTATTTTTACCAATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATCATATGCAAGTCCTCATGCTTGTGCATCAATTATTTTTACCAATC  449

seq1  GAGTTATTGCCTCAGCCTCCCAGATTTCTACCTGTCTATCTGCTTCTTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTATTGCCTCAGCCTCCCAGATTTCTACCTGTCTATCTGCTTCTTCT  499

seq1  CAAAATGCCAGCTTGGCTCCTCTGAGGTCCGAACCCTGGACTAATAGGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATGCCAGCTTGGCTCCTCTGAGGTCCGAACCCTGGACTAATAGGGT  549

seq1  TCCGACCTCAGAAGAATAGGGCCTCCATGTTGGTCTGTTCCAATCTCCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGACCTCAGAAGAATAGGGCCTCCATGTTGGTCTGTTCCAATCTCCAT  599

seq1  CTCCTCTCTATGCATCTCCCCTCAAAGAAGTAAAACAATGGAATAGCATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTCTCTATGCATCTCCCCTCAAAGAAGTAAAACAATGGAATAGCATT  649

seq1  TCATTGCCAGTGAGAAGACTTTATAAAGTCTGCATTCATTTAGCATTTCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTGCCAGTGAGAAGACTTTATAAAGTCTGCATTCATTTAGCATTTCC  699

seq1  CAGAAAAGGAATTCTGATGAGTCTTTACAAGCAGAACTACCTTTGATGTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAAGGAATTCTGATGAGTCTTTACAAGCAGAACTACCTTTGATGTC  749

seq1  ATTTAGGCTTGAAGCTCTTTTTTATTTCTTATATATTGTCCCAAACTTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAGGCTTGAAGCTCTTTTTTATTTCTTATATATTGTCCCAAACTTTT  799

seq1  AGTTTCTTGTTCTCTAATTCTGGGCCACTCCATGTGACCCCAAGCACATG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTCTTGTTCTCTAATTCTGGGCCACTCCATGTGACCCCAAGCACATG  849

seq1  ACTTATGACCTAGATAGCTTTATATCACCATCACGTCATTCTTTTATCAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTATGACCTAGATAGCTTTATATCACCATCACGTCATTCTTTTATCAA  899

seq1  ATGAGCTGCCCCATGCCAATTTCTTCATAGACTGTGGAAAAGGCAGATAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGCTGCCCCATGCCAATTTCTTCATAGACTGTGGAAAAGGCAGATAA  949

seq1  CACATCTTGTCCCAACTATGAATTC  975
      |||||||||||||||||||||||||
seq2  CACATCTTGTCCCAACTATGAATTC  974

seq1: chr9_52346103_52346440
seq2: B6Ng01-254O06.g_78_415

seq1  TCACATGTCTCACAAGGACTACTGTCTCAGATAATAGAGATCCTGTTTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACATGTCTCACAAGGACTACTGTCTCAGATAATAGAGATCCTGTTTTA  50

seq1  GATAACAGGGCTCCTTAAGATGAGCTAGTCCCCATTTTAAAAGGTGATAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAACAGGGCTCCTTAAGATGAGCTAGTCCCCATTTTAAAAGGTGATAC  100

seq1  CACGAGTCAAGATGTGCGTGCACATATATGTTGAACTCTAGATATGTTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGAGTCAAGATGTGCGTGCACATATATGTTGAACTCTAGATATGTTCT  150

seq1  GAGGAGTAATTCAAACTGACTGAAATTTGGTCTTGATCCACTGAGCAGTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAGTAATTCAAACTGACTGAAATTTGGTCTTGATCCACTGAGCAGTA  200

seq1  ACAGTTCTTTGAGAATACAGCCATCCATCCCCTTACTCCTTTTTATTTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTTCTTTGAGAATACAGCCATCCATCCCCTTACTCCTTTTTATTTCA  250

seq1  TGTAGCCATAGTTAAGCTTTTGGGCATTGAACTGTTTTTGTTTGTTTGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGCCATAGTTAAGCTTTTGGGCATTGAACTGTTTTTGTTTGTTTGTT  300

seq1  TGTTTGTTTGTTTGGTTGGTTGGTTGGTTTGGTTTGGT  338
      ||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGTTTGTTTGGTTGGTTGGTTGGTTTGGTTTGGT  338