BAC Information

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BAC

Clone NameB6Ng01-255A03
Chromosome9 (Build37)
Map Location 33,643,881 - 33,770,080
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100042343
Downstream geneKirrel3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-255A03.bB6Ng01-255A03.g
ACCGA061323GA061324
length1,1601,095
definitionB6Ng01-255A03.b B6Ng01-255A03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(33,643,881 - 33,645,034)(33,768,992 - 33,770,080)
sequence
gaattctttaaaattcagtaatatgagatcccaaagaactacctttcaaa
tacacataggtacattcctgagtatagaaagttttctatagttactttct
gagaaaaatgaataaatgataaaaaaaaagcatagaaaaaagtgctcaaa
attttgtcatgagaaaatgcagatcaaatactgagttagatagcatttca
cctaatttaggttggccatcactaagaagagagatcaaaacaagtgattg
caagaatatggaagaactagtccttgtattggctggttgtatttgtcaat
gtgatacaagcaagagtcatctgatagaaagaggctcagttgaggaaatt
cctatgtaagatacagctataaggaattttattatttaatgatcaactag
ggagggcccagtccatggtcagtggtatcatttatgtgcttgtggtcctg
ggttttataagaaagcaggctgagcaaaccaagagaaacaaaccattaaa
catcactgctccatggtttcttcattagaacccttcaggttccagcccta
aaagaattcatgtcctgaccttctccaatggtggactatgatcagaatat
gtaagccaaacaaacccttttcttcccaactgctttgtggccatggtatt
tcattgcaggcatagaagccctaactaggacagtactcctacatttttgt
ccaaggtataaagtggcacagccatattatagtagatattgggctcctgg
gacagaggaaaggtagcaacgtgtgtatttaatacaagaaggtacatggg
attgtgaaggggttcaaaacgtactgtaattagatttcaaacataaattt
tatcgatatactaaaacaatatgcaattaacctgcatactttaaattagt
gagctgaatgaaatacaaattacacttcaaaaaaaaaaaagagcaagaga
aagtaacagtacttttctggcctacgtacggaagttgcgttccatcaaac
ttgctttattctattggttgggagtaggtcaggatcatcccacccatacc
aaagggcagccaatttcacctcaaggatcactgggggttatcttcaagtt
ccacttgcaacaaaataattttctgtaggtcaagaaaaaacaattgataa
tagttacaaa

gaattcaatacatagctgaggctttcccaaggtgttctctactattctta
tgtcttgctttagaatgtttacagatccctagtaggaacttacagtccta
tgctgaagagaaaaaaatattgtaagttagggaaggaattttgaagcaat
ttgttcttttcagcttagacaacctgaatatccaaaccattttgttgttg
atgatgatgatgatttattatgtacctcctgcatcttgatgctagctagt
gaatagcatgcaggagcaacttcttaatctagaaccattggaaataaacc
gtcattcaagactttttccaatagtcacaatgccggatgctcatatatgc
acaccatgtctcatgtctcatgtcacatttcatcctgacgactgggatca
tgggagataatggatgttgaaacacttgccaatgtttacagaatcattta
ttatcggggatgggattcgaatctcagtgtattttgactacttatggtcc
aatgttgaaagggagcttcaaggaaatatcaaagaaaaacaagtgtaaat
gcattttagttcatatttctttacaaacacatcttatcctttttcttttt
ttttttccattttttattaggtatttaactcatttacatttctaatgcta
taccaaaagtcccccatatccacccacccccactcccctgcccacccact
ccccctttttggccctggtattcccctgtactggggcatataaagtttgc
aagtccaatgggcctctctttccagtgatggccgactaggccatcttttg
atatatatgcagctagagtcaagagctccggggtactggttagctcataa
tgttgttccacctatagggttgcagatcccctttagctccttggctactt
tctctagctcctcattggggagccctaatgatccatccattagctgactg
tgagcatcaactttctgtgtttgctggggcccggcattagtctcaaaaga
agacagggtacatctgcgtccttcaataaaatctttgctagttgtatgca
atggtgtcaacgttcggatgctgatatgggggtgatccctgccta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_33643881_33645034
seq2: B6Ng01-255A03.b_46_1205

seq1  GAATTCTTTAAAATTCAGTAATATGAGATCCCAAAGAACTACCTTTCAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTAAAATTCAGTAATATGAGATCCCAAAGAACTACCTTTCAAA  50

seq1  TACACATAGGTACATTCCTGAGTATAGAAAGTTTTCTATAGTTACTTTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACATAGGTACATTCCTGAGTATAGAAAGTTTTCTATAGTTACTTTCT  100

seq1  GAGAAAAATGAATAAATGATAAAAAAAAAGCATAGAAAAAAGTGCTCAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAAAATGAATAAATGATAAAAAAAAAGCATAGAAAAAAGTGCTCAAA  150

seq1  ATTTTGTCATGAGAAAATGCAGATCAAATACTGAGTTAGATAGCATTTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGTCATGAGAAAATGCAGATCAAATACTGAGTTAGATAGCATTTCA  200

seq1  CCTAATTTAGGTTGGCCATCACTAAGAAGAGAGATCAAAACAAGTGATTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAATTTAGGTTGGCCATCACTAAGAAGAGAGATCAAAACAAGTGATTG  250

seq1  CAAGAATATGGAAGAACTAGTCCTTGTATTGGCTGGTTGTATTTGTCAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAATATGGAAGAACTAGTCCTTGTATTGGCTGGTTGTATTTGTCAAT  300

seq1  GTGATACAAGCAAGAGTCATCTGATAGAAAGAGGCTCAGTTGAGGAAATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATACAAGCAAGAGTCATCTGATAGAAAGAGGCTCAGTTGAGGAAATT  350

seq1  CCTATGTAAGATACAGCTATAAGGAATTTTATTATTTAATGATCAACTAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATGTAAGATACAGCTATAAGGAATTTTATTATTTAATGATCAACTAG  400

seq1  GGAGGGCCCAGTCCATGGTCAGTGGTATCATTTATGTGCTTGTGGTCCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGGCCCAGTCCATGGTCAGTGGTATCATTTATGTGCTTGTGGTCCTG  450

seq1  GGTTTTATAAGAAAGCAGGCTGAGCAAACCAAGAGAAACAAACCATTAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTATAAGAAAGCAGGCTGAGCAAACCAAGAGAAACAAACCATTAAA  500

seq1  CATCACTGCTCCATGGTTTCTTCATTAGAACCCTTCAGGTTCCAGCCCTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCACTGCTCCATGGTTTCTTCATTAGAACCCTTCAGGTTCCAGCCCTA  550

seq1  AAAGAATTCATGTCCTGACCTTCTCCAATGGTGGACTATGATCAGAATAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAATTCATGTCCTGACCTTCTCCAATGGTGGACTATGATCAGAATAT  600

seq1  GTAAGCCAAACAAACCCTTTTCTTCCCAACTGCTTTGTGGCCATGGTATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGCCAAACAAACCCTTTTCTTCCCAACTGCTTTGTGGCCATGGTATT  650

seq1  TCATTGCAGGCATAGAAGCCCTAACTAGGACAGTACTCCTACATTTTTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTGCAGGCATAGAAGCCCTAACTAGGACAGTACTCCTACATTTTTGT  700

seq1  CCAAGGTATAAAGTGGCACAGCCATATTATAGTAGATATTGGGCTCCTGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGGTATAAAGTGGCACAGCCATATTATAGTAGATATTGGGCTCCTGG  750

seq1  GACAGAGGAAAGGTAGCAACGTGTGTATTTAATACAAGAAGGTACATGGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGAGGAAAGGTAGCAACGTGTGTATTTAATACAAGAAGGTACATGGG  800

seq1  ATTGTGAAGGGGTTCAAAACGTACTGTAATTAGATTTCAAACATAAATTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTGAAGGGGTTCAAAACGTACTGTAATTAGATTTCAAACATAAATTT  850

seq1  TATCGATATACTAAAACAATATGCAATTAACCTGCATACTTTAAATTAGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCGATATACTAAAACAATATGCAATTAACCTGCATACTTTAAATTAGT  900

seq1  GAGCTGAATGAAATACAAATTACACTTCAAAAAAAAAAAAGAGCAAGAGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTGAATGAAATACAAATTACACTTCAAAAAAAAAAAAGAGCAAGAGA  950

seq1  AAGTAACAGTAC-TTTCTGGCCTACGTACGGAAGTTGCGTTCCATCAAAC  999
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  AAGTAACAGTACTTTTCTGGCCTACGTACGGAAGTTGCGTTCCATCAAAC  1000

seq1  TTGCTTTATTCTATTGGTTGGGAGTAGGTCA-GATCATCCCACCCATACC  1048
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TTGCTTTATTCTATTGGTTGGGAGTAGGTCAGGATCATCCCACCCATACC  1050

seq1  AAAGGGCAGCCAAATTCA-CTCAAAGATCACT-GGGGTTATCTTCAAAGT  1096
      ||||||||||||| |||| ||||| ||||||| ||||||||||||||  |
seq2  AAAGGGCAGCCAATTTCACCTCAAGGATCACTGGGGGTTATCTTCAAGTT  1100

seq1  CCACTTGCAACAAAATAATTTTCTGTAGGTC-AGAAAAA--CATTGATTA  1143
      ||||||||||||||||||||||||||||||| |||||||   ||||| ||
seq2  CCACTTGCAACAAAATAATTTTCTGTAGGTCAAGAAAAAACAATTGA-TA  1149

seq1  ATAGTCACAAA  1154
      ||||| |||||
seq2  ATAGTTACAAA  1160


seq1: chr9_33768992_33770080
seq2: B6Ng01-255A03.g_68_1162 (reverse)

seq1  TAGCCAGGGATCCACCCCATAATCAGCATCCAAACGCTGACACCATTGCA  50
      ||| ||||||||  |||||| |||||||||| |||| |||||||||||||
seq2  TAGGCAGGGATCACCCCCAT-ATCAGCATCCGAACGTTGACACCATTGCA  49

seq1  TAC-ACTAGC-AAGATTTTATTGAAAGGACGCAGATGTA-CCTGTC-TCT  96
      ||| |||||| |||||||||||| ||||||||||||||| |||||| |||
seq2  TACAACTAGCAAAGATTTTATTG-AAGGACGCAGATGTACCCTGTCTTCT  98

seq1  TGTGAGACT-ATGCCGGGGCCCAGCAAACACAG-AAGTGGATGCTCACAG  144
      | ||||||| |||||||| |||||||||||||| |||| |||||||||||
seq2  TTTGAGACTAATGCCGGGCCCCAGCAAACACAGAAAGTTGATGCTCACAG  148

seq1  TCAGCTAATGGATGGATCA-TAGGGCTCCCAATGGAGGAGCTAGAGAAAG  193
      ||||||||||||||||||| |||||||||| |  ||||||||||||||||
seq2  TCAGCTAATGGATGGATCATTAGGGCTCCCCAATGAGGAGCTAGAGAAAG  198

seq1  TAGCCAAGGAGCTAAA-GGGATCTGCAACCCTATAGGTGGAACAACATTA  242
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TAGCCAAGGAGCTAAAGGGGATCTGCAACCCTATAGGTGGAACAACATTA  248

seq1  TGAGCTAACCAGTACCCCGGAGCTCTTGACTCTAGCTGCATATATATCAA  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCTAACCAGTACCCCGGAGCTCTTGACTCTAGCTGCATATATATCAA  298

seq1  AAGATGGCCTAGTCGGCCATCACTGGAAAGAGAGGCCCATTGGACTTGCA  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATGGCCTAGTCGGCCATCACTGGAAAGAGAGGCCCATTGGACTTGCA  348

seq1  AACTTTATATGCCCCAGTACAGGGGAATACCAGGGCCAAAAAGGGGGAGT  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTATATGCCCCAGTACAGGGGAATACCAGGGCCAAAAAGGGGGAGT  398

seq1  GGGTGGGCAGGGGAGTGGGGGTGGGTGGATATGGGGGACTTTTGGTATAG  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGGGCAGGGGAGTGGGGGTGGGTGGATATGGGGGACTTTTGGTATAG  448

seq1  CATTAGAAATGTAAATGAGTTAAATACCTAATAAAAAATGGAAAAAAAAA  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAGAAATGTAAATGAGTTAAATACCTAATAAAAAATGGAAAAAAAAA  498

seq1  AAGAAAAAGGATAAGATGTGTTTGTAAAGAAATATGAACTAAAATGCATT  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAAAGGATAAGATGTGTTTGTAAAGAAATATGAACTAAAATGCATT  548

seq1  TACACTTGTTTTTCTTTGATATTTCCTTGAAGCTCCCTTTCAACATTGGA  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACTTGTTTTTCTTTGATATTTCCTTGAAGCTCCCTTTCAACATTGGA  598

seq1  CCATAAGTAGTCAAAATACACTGAGATTCGAATCCCATCCCCGATAATAA  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAAGTAGTCAAAATACACTGAGATTCGAATCCCATCCCCGATAATAA  648

seq1  ATGATTCTGTAAACATTGGCAAGTGTTTCAACATCCATTATCTCCCATGA  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATTCTGTAAACATTGGCAAGTGTTTCAACATCCATTATCTCCCATGA  698

seq1  TCCCAGTCGTCAGGATGAAATGTGACATGAGACATGAGACATGGTGTGCA  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGTCGTCAGGATGAAATGTGACATGAGACATGAGACATGGTGTGCA  748

seq1  TATATGAGCATCCGGCATTGTGACTATTGGAAAAAGTCTTGAATGACGGT  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATGAGCATCCGGCATTGTGACTATTGGAAAAAGTCTTGAATGACGGT  798

seq1  TTATTTCCAATGGTTCTAGATTAAGAAGTTGCTCCTGCATGCTATTCACT  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTCCAATGGTTCTAGATTAAGAAGTTGCTCCTGCATGCTATTCACT  848

seq1  AGCTAGCATCAAGATGCAGGAGGTACATAATAAATCATCATCATCATCAA  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAGCATCAAGATGCAGGAGGTACATAATAAATCATCATCATCATCAA  898

seq1  CAACAAAATGGTTTGGATATTCAGGTTGTCTAAGCTGAAAAGAACAAATT  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAAAATGGTTTGGATATTCAGGTTGTCTAAGCTGAAAAGAACAAATT  948

seq1  GCTTCAAAATTCCTTCCCTAACTTACAATATTTTTTTCTCTTCAGCATAG  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCAAAATTCCTTCCCTAACTTACAATATTTTTTTCTCTTCAGCATAG  998

seq1  GACTGTAAGTTCCTACTAGGGATCTGTAAACATTCTAAAGCAAGACATAA  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGTAAGTTCCTACTAGGGATCTGTAAACATTCTAAAGCAAGACATAA  1048

seq1  GAATAGTAGAGAACACCTTGGGAAAGCCTCAGCTATGTATTGAATTC  1089
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAGTAGAGAACACCTTGGGAAAGCCTCAGCTATGTATTGAATTC  1095


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