BAC Information

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BAC

Clone NameB6Ng01-255A16
Chromosome9 (Build37)
Map Location 117,726,592 - 117,877,058
singlet/doubletdoublet
Overlap geneLOC100039650, LOC100039681
Upstream geneRbms3, LOC665840
Downstream geneAzi2, 2010110K16Rik, Eomes, Golga4, Itga9, LOC100039768, Ctdspl
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-255A16.bB6Ng01-255A16.g
ACCGA061349GA061350
length9541,170
definitionB6Ng01-255A16.b B6Ng01-255A16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(117,726,592 - 117,727,538)(117,875,884 - 117,877,058)
sequence
gaattcagtatcccggctgtttttccggtgtgaaatgcctcctcccagaa
cctcccctcagcctttccttgtcggcccgtccatgccccatctttctgag
aagtctctgattcttcacctttatcgccctgccctcattacttggggagg
gaggtggttggtctttctgctgcagactgatctcaggtgcttggttgaca
gccaccctgctgtgagccactgacccagtcctctgcacaccctggccatc
taactgcttattttcccagtctgaagtcagttcaatgtctgatttgttaa
tgtcttccttactgtttcatctgctggatgctaaggaattaatagctggc
tacacatgggtgcattcccaagcctgggagctgggcctgcaagagcaaag
gcgcaaggatgcatgctgctcagggccagcggtggatgctggaactcccc
gcttggagggaggaaggaacaggtgccaggatgtggagaaggatggaggc
tgtgttatgagggctgcctcgacagcagctaagatctgtgagatataatt
cagccaccctcctattagagaggaagctgacaccaaacatccgcgtcctt
ccccattgtccctcattccccagcagtatactgctcctccaactaagagt
gggtctgagcacctggacgtgtgggggcaggggcagcatcagtttcctga
gaggaggcagataataaatgccccactttttcctgagtcattggttctct
ccccaactatttagtactgctctgtaaacctagaatacaggagtattaga
gggatacggcacgaacaagaatttgcttatagaaataaatttgtgtttca
gatagttttcaaatcttcatcaaattacctttcttctgacttttttcaca
aagttaaaaattacaaaacttgttgcttagtttatgaccacatatatatc
gtgt

gaattcacactctcaaaagtgtctccctgctgcacaccactgcggtttcc
tgcctgggctgttgctgtagcctgctaagcagctgttccacagcgacact
taacttctgcataacttgaactcatcagagtagtgagattgattgtttga
aggcattaaccaaagccaggtatggtggtgcatgtaattccagtgaacag
agtgagacgggcatggcaagttctgtccagcctgaggtatgcagtaagac
catgtctcacaaagcgggaaaggcagggaaagacggtctggtggaccgtc
tccaccagagctctgcagtgtcacctgtttcaggctgggcaggaactaaa
cactgctgctggcttcatggccctccctactctggcccttagtaattttt
ctggcactctccccatcttttatcattgtctctctgccacactgcgttct
ttgatgcatcctgaatatgcatccatatccgacctttgagaatatcttct
ccagaaacattcttttcttgaagggctagatggctggctccccaaactcc
ttcaagtctgctcaaaagacaccctgtcagtttcagtgagtttctctgac
cactgttctgctctcgctcactctgcatgggtgattgccctggcctcctg
ccatgtaggctttccttaccccacacagaatgctagagtgctgcttttca
cacagtggaccagaggtgagtattgtctgctcaccaacagttccccaaat
agggggctacattgtgttgaatcagtcaatcaattgcataatcaaaaaga
ggaaaaacaaaacatatatctattaatatcaatgtcaaataaatgcctat
gtttttttcaagtgcttataaatgcatattgaatttgtagaatagaaaaa
gcatttattcatggttgactacgtgagaaagagttcagagagtgacaaag
atggagaatccagaatccctagagcttgaacctgccacgtctgatttaaa
aaaaaaagtgcagtgtacagtgagtctcattctgggaattaaaattctca
ttaggtgagcctcacctgagcactcaggcagtgttaatttggttcagcca
ctaggtgtctgatatctaccattaggtctatgagtctggacaggagtcca
gcttctccagctcccgtgag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_117726592_117727538
seq2: B6Ng01-255A16.b_46_999

seq1  GAATTCAGTATCCCGGCTGTTTTTCCGGTGTGAAATGCCTCCTCCCAGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTATCCCGGCTGTTTTTCCGGTGTGAAATGCCTCCTCCCAGAA  50

seq1  CCTCCCCTCAGCCTTTCCTTGTCGGCCCGTCCATGCCCCATCTTTCTGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCCTCAGCCTTTCCTTGTCGGCCCGTCCATGCCCCATCTTTCTGAG  100

seq1  AAGTCTCTGATTCTTCACCTTTATCGCCCTGCCCTCATTACTTGGGGAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCTCTGATTCTTCACCTTTATCGCCCTGCCCTCATTACTTGGGGAGG  150

seq1  GAGGTGGTTGGTCTTTCTGCTGCAGACTGATCTCAGGTGCTTGGTTGACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTGGTTGGTCTTTCTGCTGCAGACTGATCTCAGGTGCTTGGTTGACA  200

seq1  GCCACCCTGCTGTGAGCCACTGACCCAGTCCTCTGCACACCCTGGCCATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACCCTGCTGTGAGCCACTGACCCAGTCCTCTGCACACCCTGGCCATC  250

seq1  TAACTGCTTATTTTCCCAGTCTGAAGTCAGTTCAATGTCTGATTTGTTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTGCTTATTTTCCCAGTCTGAAGTCAGTTCAATGTCTGATTTGTTAA  300

seq1  TGTCTTCCTTACTGTTTCATCTGCTGGATGCTAAGGAATTAATAGCTGGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTCCTTACTGTTTCATCTGCTGGATGCTAAGGAATTAATAGCTGGC  350

seq1  TACACATGGGTGCATTCCCAAGCCTGGGAGCTGGGCCTGCAAGAGCAAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACATGGGTGCATTCCCAAGCCTGGGAGCTGGGCCTGCAAGAGCAAAG  400

seq1  GCGCAAGGATGCATGCTGCTCAGGGCCAGCGGTGGATGCTGGAACTCCCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCAAGGATGCATGCTGCTCAGGGCCAGCGGTGGATGCTGGAACTCCCC  450

seq1  GCTTGGAGGGAGGAAGGAACAGGTGCCAGGATGTGGAGAAGGATGGAGGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGGAGGGAGGAAGGAACAGGTGCCAGGATGTGGAGAAGGATGGAGGC  500

seq1  TGTGTTATGAGGGCTGCCTCGACAGCAGCTAAGATCTGTGAGATATAATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTATGAGGGCTGCCTCGACAGCAGCTAAGATCTGTGAGATATAATT  550

seq1  CAGCCACCCTCCTATTAGAGAGGAAGCTGACACCAAACATCCGCGTCCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCACCCTCCTATTAGAGAGGAAGCTGACACCAAACATCCGCGTCCTT  600

seq1  CCCCATTGTCCCTCATTCCCCAGCAGTATACTGCTCCTCCAACTAAGAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCATTGTCCCTCATTCCCCAGCAGTATACTGCTCCTCCAACTAAGAGT  650

seq1  GGGTCTGAGCACCTGGACGTGT-GGGGCAGGGGCAGCATCAGTTTCCTGA  699
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  GGGTCTGAGCACCTGGACGTGTGGGGGCAGGGGCAGCATCAGTTTCCTGA  700

seq1  GAGGAGGCAGATAATAAATGCCCCAC-TTTTCCTGAGTCATTGGTTCTCT  748
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  GAGGAGGCAGATAATAAATGCCCCACTTTTTCCTGAGTCATTGGTTCTCT  750

seq1  CCCCAACTATTTAGTACTGCTCTGTAAACCTAGAATACAGGAGTA-TAGA  797
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  CCCCAACTATTTAGTACTGCTCTGTAAACCTAGAATACAGGAGTATTAGA  800

seq1  -GGATACGGCACGAACAAGAATTTGCTTATAGAAAT-AATTTGTGTTTCA  845
       ||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  GGGATACGGCACGAACAAGAATTTGCTTATAGAAATAAATTTGTGTTTCA  850

seq1  GATAGTTTTCAAATC-TCATCAAA-TACCTTTCCTCTGACTTTTTTCCAC  893
      ||||||||||||||| |||||||| |||||||| |||||||||||| |||
seq2  GATAGTTTTCAAATCTTCATCAAATTACCTTTCTTCTGACTTTTTT-CAC  899

seq1  AAAGTTAAAAATTACAAAACTTG-TGCTTAGTTTATGACCACATATATAT  942
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  AAAGTTAAAAATTACAAAACTTGTTGCTTAGTTTATGACCACATATATAT  949

seq1  CGTGT  947
      |||||
seq2  CGTGT  954


seq1: chr9_117875884_117877058
seq2: B6Ng01-255A16.g_67_1236 (reverse)

seq1  CTCA-GGGAGCTGG-GAAGCTGGGACT-CTGTCAGGGCTTCTTTAAGAAC  47
      |||| ||||||||| |||||| ||||| |||||  | ||  |   ||| |
seq2  CTCACGGGAGCTGGAGAAGCT-GGACTCCTGTCCAGACTCAT---AGACC  46

seq1  TTATGGTAGATACAGGACACCTAGTGGCTGAA-CAAATTAACACTGCCTG  96
      | ||||||||||   ||||||||||||||||| |||||||||||||||||
seq2  TAATGGTAGATATCAGACACCTAGTGGCTGAACCAAATTAACACTGCCTG  96

seq1  AAGGTGCTCAGTTGAGCCTCAACTTTATGAAGAATTTTTAATTCCAGAAT  146
      |  |||||||| |||| ||| || | ||| |||||||| | | |||||||
seq2  A--GTGCTCAGGTGAGGCTC-ACCTAATG-AGAATTTTAATTCCCAGAAT  142

seq1  GAGACTCAACTGTACACTGCACTTTTTTTTTTTAAATCAAGACGTGGCAG  196
      ||||||| |||||||||||||| ||||||||||||||| |||||||||||
seq2  GAGACTC-ACTGTACACTGCAC-TTTTTTTTTTAAATC-AGACGTGGCAG  189

seq1  GTTCAAGCTCTAGGGATTCTGGA-TCTCCATCTTTGTCACTCTCTGAACT  245
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  GTTCAAGCTCTAGGGATTCTGGATTCTCCATCTTTGTCACTCTCTGAACT  239

seq1  CTTTCTCACGTAGTCAACCATG-ATTAATGCTTTTTCTATTCTACAAATT  294
      |||||||||||||||||||||| || ||||||||||||||||||||||||
seq2  CTTTCTCACGTAGTCAACCATGAATAAATGCTTTTTCTATTCTACAAATT  289

seq1  CAATATGCATTTATAAGCACTTGAAAAAAACATAGGCATTTATTTGACAT  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATATGCATTTATAAGCACTTGAAAAAAACATAGGCATTTATTTGACAT  339

seq1  TGATATTAATAGATATATGTTTTGTTTTTCCTCTTTTTGATTATGCAATT  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATATTAATAGATATATGTTTTGTTTTTCCTCTTTTTGATTATGCAATT  389

seq1  GATTGACTGATTCAACACAATGTAGCCCCCTATTTGGGGAACTGTTGGTG  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGACTGATTCAACACAATGTAGCCCCCTATTTGGGGAACTGTTGGTG  439

seq1  AGCAGACAATACTCACCTCTGGTCCACTGTGTGAAAAGCAGCACTCTAGC  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGACAATACTCACCTCTGGTCCACTGTGTGAAAAGCAGCACTCTAGC  489

seq1  ATTCTGTGTGGGGTAAGGAAAGCCTACATGGCAGGAGGCCAGGGCAATCA  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGTGTGGGGTAAGGAAAGCCTACATGGCAGGAGGCCAGGGCAATCA  539

seq1  CCCATGCAGAGTGAGCGAGAGCAGAACAGTGGTCAGAGAAACTCACTGAA  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATGCAGAGTGAGCGAGAGCAGAACAGTGGTCAGAGAAACTCACTGAA  589

seq1  ACTGACAGGGTGTCTTTTGAGCAGACTTGAAGGAGTTTGGGGAGCCAGCC  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGACAGGGTGTCTTTTGAGCAGACTTGAAGGAGTTTGGGGAGCCAGCC  639

seq1  ATCTAGCCCTTCAAGAAAAGAATGTTTCTGGAGAAGATATTCTCAAAGGT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAGCCCTTCAAGAAAAGAATGTTTCTGGAGAAGATATTCTCAAAGGT  689

seq1  CGGATATGGATGCATATTCAGGATGCATCAAAGAACGCAGTGTGGCAGAG  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGATATGGATGCATATTCAGGATGCATCAAAGAACGCAGTGTGGCAGAG  739

seq1  AGACAATGATAAAAGATGGGGAGAGTGCCAGAAAAATTACTAAGGGCCAG  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAATGATAAAAGATGGGGAGAGTGCCAGAAAAATTACTAAGGGCCAG  789

seq1  AGTAGGGAGGGCCATGAAGCCAGCAGCAGTGTTTAGTTCCTGCCCAGCCT  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGGGAGGGCCATGAAGCCAGCAGCAGTGTTTAGTTCCTGCCCAGCCT  839

seq1  GAAACAGGTGACACTGCAGAGCTCTGGTGGAGACGGTCCACCAGACCGTC  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACAGGTGACACTGCAGAGCTCTGGTGGAGACGGTCCACCAGACCGTC  889

seq1  TTTCCCTGCCTTTCCCGCTTTGTGAGACATGGTCTTACTGCATACCTCAG  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCTGCCTTTCCCGCTTTGTGAGACATGGTCTTACTGCATACCTCAG  939

seq1  GCTGGACAGAACTTGCCATGCCCGTCTCACTCTGTTCACTGGAATTACAT  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGACAGAACTTGCCATGCCCGTCTCACTCTGTTCACTGGAATTACAT  989

seq1  GCACCACCATACCTGGCTTTGGTTAATGCCTTCAAACAATCAATCTCACT  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCACCATACCTGGCTTTGGTTAATGCCTTCAAACAATCAATCTCACT  1039

seq1  ACTCTGATGAGTTCAAGTTATGCAGAAGTTAAGTGTCGCTGTGGAACAGC  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGATGAGTTCAAGTTATGCAGAAGTTAAGTGTCGCTGTGGAACAGC  1089

seq1  TGCTTAGCAGGCTACAGCAACAGCCCAGGCAGGAAACCGCAGTGGTGTGC  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTAGCAGGCTACAGCAACAGCCCAGGCAGGAAACCGCAGTGGTGTGC  1139

seq1  AGCAGGGAGACACTTTTGAGAGTGTGAATTC  1175
      |||||||||||||||||||||||||||||||
seq2  AGCAGGGAGACACTTTTGAGAGTGTGAATTC  1170


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