BAC Information

Click to search

BAC

Clone NameB6Ng01-255N21
Chromosome9 (Build37)
Map Location 119,159,011 - 119,159,918
singlet/doubletsinglet
Overlap geneOxsr1
Upstream geneEomes, Golga4, Itga9, LOC100039768, Ctdspl, Vill, Plcd1, Dlec1, Acaa1b, EG546165, Slc22a14, Slc22a13, 9330176C04Rik
Downstream geneMyd88, Acaa1a, Xylb, Acvr2b, Endogl1, Scn5a, Scn10a, Scn11a, LOC100039837, Wdr48, Gorasp1, Ttc21a, Axud1, Cmya1, Cx3cr1, Ccr8, Slc25a38, Rpsa, Snora62, EG546166, Mobp, LOC100039898
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-255N21.bB6Ng01-255N21.g
ACCGA061970GA061971
length1,198107
definitionB6Ng01-255N21.b B6Ng01-255N21.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcccacagttcagcaattccacttctagacgtctagctcagagaac
tgagagccggtgttacacactgacgttcgtagcagcactatccactactc
acaggacggaagcacttcaacctgcagatgtcatctgagagctgctacaa
catggatgcaccacaaggacattgtgtgggcaaaacagccgatgagaaaa
taaaaaacactgtgactccactaatacaaaacacacagaataatcaactg
tgttgacctgccagcttccaaaatgacatagagacaattattacttatta
aaactcaggcctttgcttaggcgatttcccaactagctcgtataacttca
ctagcccatctatactagtccacgtttgcaaccaactcttacaacgactc
agtttgtcggacttcctccctttctggctggcaacttccacacctctcaa
ttcttcctacagctcctatctctgcccagaagttctgcttttcctattgt
gccttcacgctgccagctctttattaaaccagtgagaaggtgaaggaggt
gaatgtttacaaaatatgatgcaggtactgaacaactggaatagcaatac
caacgtccattctcagctctctattggtaggaaatcaacatttgaataat
gcagagacaacttttacatagtgcacaaagattatcctaacaagacaggg
tttctctgtgtagccctgtctattgtggaattcactctgtagaccaggct
ggcctcaaaatgagagaacctcctgcctctgcctcccaatcttttaagag
ggtgggtaaagaacaaggtctcagtgtattccaagctaactttgaactca
ttatgaagccaagaagaatcttgaacttttaatcttgctacttgccaaaa
cctgggatttcagggatatgcatcacacttagttttatgtagcatggggg
atggacctcaggcgtctgctatgctgtcatcaagccatgacctcagcccc
tgatggattttccactgcgcatgatgtcaggccttggaaagagagtgatc
tcaggcgtgctgagagtgaggaatggaaccacacagcagcgggaactgtg
tcacccgagggttgctacctagatacatgatattattggagatataggtc
atgtaaccaagtagtcccattagtcatgttacacagtaacgccacata
tgggaacttttcagagggcctataaataaatcctagggccccaaaaagca
gggtcaatggctgttgggggagaggggctgtcagggggaggggctggtgg
gggagga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_119159011_119159918
seq2: B6Ng01-255N21.b_343_1249

seq1  TACTTATTAAAACTCAGGCCTTTGCTTAGGCGATTTCCCAACTAGCTCGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTATTAAAACTCAGGCCTTTGCTTAGGCGATTTCCCAACTAGCTCGT  50

seq1  ATAACTTCACTAGCCCATCTATACTAGTCCACGTTTGCAACCAACTCTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACTTCACTAGCCCATCTATACTAGTCCACGTTTGCAACCAACTCTTA  100

seq1  CAACGACTCAGTTTGTCGGACTTCCTCCCTTTCTGGCTGGCAACTTCCAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACGACTCAGTTTGTCGGACTTCCTCCCTTTCTGGCTGGCAACTTCCAC  150

seq1  ACCTCTCAATTCTTCCTACAGCTCCTATCTCTGCCCAGAAGTTCTGCTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCTCAATTCTTCCTACAGCTCCTATCTCTGCCCAGAAGTTCTGCTTT  200

seq1  TCCTATTGTGCCTTCACGCTGCCAGCTCTTTATTAAACCAGTGAGAAGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTATTGTGCCTTCACGCTGCCAGCTCTTTATTAAACCAGTGAGAAGGT  250

seq1  GAAGGAGGTGAATGTTTACAAAATATGATGCAGGTACTGAACAACTGGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGAGGTGAATGTTTACAAAATATGATGCAGGTACTGAACAACTGGAA  300

seq1  TAGCAATACCAACGTCCATTCTCAGCTCTCTATTGGTAGGAAATCAACAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAATACCAACGTCCATTCTCAGCTCTCTATTGGTAGGAAATCAACAT  350

seq1  TTGAATAATGCAGAGACAACTTTTACATAGTGCACAAAGATTATCCTAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAATAATGCAGAGACAACTTTTACATAGTGCACAAAGATTATCCTAAC  400

seq1  AAGACAGGGTTTCTCTGTGTAGCCCTGTCTATTGTGGAATTCACTCTGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACAGGGTTTCTCTGTGTAGCCCTGTCTATTGTGGAATTCACTCTGTA  450

seq1  GACCAGGCTGGCCTCAAAATGAGAGAACCTCCTGCCTCTGCCTCCCAATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAGGCTGGCCTCAAAATGAGAGAACCTCCTGCCTCTGCCTCCCAATC  500

seq1  TTTTAAGAGGGTGGGTAAAGAACAAGGTCTCAGTGTATTCCAAGCTAACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAGAGGGTGGGTAAAGAACAAGGTCTCAGTGTATTCCAAGCTAACT  550

seq1  TTGAACTCATTATGAAGCCAAGAAGAATCTTGAACTTTTAATCTTGCTAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAACTCATTATGAAGCCAAGAAGAATCTTGAACTTTTAATCTTGCTAC  600

seq1  TTGCCAAAACCTGGGATTTCAGGGATATGCATCACACTTAGTTTTATGTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCAAAACCTGGGATTTCAGGGATATGCATCACACTTAGTTTTATGTA  650

seq1  GCATGGGGGATGGACCTCAAGGCGTCTGCTATGCTGTCATCAAAGCCATG  700
      |||||||||||||||||| |||||||||||||||||||||| ||||||||
seq2  GCATGGGGGATGGACCTC-AGGCGTCTGCTATGCTGTCATC-AAGCCATG  698

seq1  ACCTCAGCCCCTGATGGATTTT-CACTGCGCATGATGTCAGGCCTTGGAA  749
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  ACCTCAGCCCCTGATGGATTTTCCACTGCGCATGATGTCAGGCCTTGGAA  748

seq1  AGAGAGTGATCTCAGGCGTGCTGAGAGTGAGGAATGGGAACACACAGCAG  799
      ||||||||||||||||||||||||||||||||||||| | ||||||||||
seq2  AGAGAGTGATCTCAGGCGTGCTGAGAGTGAGGAATGGAACCACACAGCAG  798

seq1  CGGG-ACTGTGTCACCCGAGTGTTGGTACTTAAGATACATGAGATTATTC  848
      |||| ||||||||||||||| |||| ||| | |||||||||| |||||| 
seq2  CGGGAACTGTGTCACCCGAGGGTTGCTACCT-AGATACATGATATTATT-  846

seq1  TGAGTACATAAGTCATGT-ACACAGTAGTGCACATAAGTCATG-TACACA  896
       ||| | ||| ||||||| ||  |||||| | ||| ||||||| ||||||
seq2  GGAG-ATATAGGTCATGTAACCAAGTAGT-CCCATTAGTCATGTTACACA  894

seq1  GTAACG-CACATA  908
      |||||| ||||||
seq2  GTAACGCCACATA  907