BAC Information

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BAC

Clone NameB6Ng01-256G11
Chromosome9 (Build37)
Map Location 94,637,711 - 94,776,390
singlet/doubletdoublet
Overlap geneSlc9a9
Upstream geneLOC674371, LOC384967, EG384968, 1190002N15Rik, EG667601
Downstream geneChst2, LOC667088, 2610101N10Rik, LOC100040097, Paqr9, Pcolce2, Trpc1, AI427122, 1700065D16Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-256G11.bB6Ng01-256G11.g
ACCGA062372GA062373
length1,1441,172
definitionB6Ng01-256G11.b B6Ng01-256G11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(94,637,711 - 94,638,861)(94,775,217 - 94,776,390)
sequence
gaattccaggacacactgaaggctttagaactcctcctgtccataccctt
cctttgcagcagaggaattaagacccagctagacaagtacccgcatttac
aagtcaatcagcaactttgaacctgtggtgagagtggtcaccacccagtg
gcaatcctctctcactggaatggaatttcattcctttacacattcagcaa
cccagggtttgattcattctggcttgttgtctgactgtttcatttccaat
tttctatcgtaaaatgtcaacttatcctcaacgtggtcattttcccactt
ctgtgtcctctggctttctttgttctgggtctaaactacagcgtcatgct
tgtaccttagtgcagctgccaatcagaacttctgcttaaccactgggcca
ttgtaaaacagtgtgcatcctctgtcagtcacacattgcttcaccaaaat
gacaagaaaaccatggcaaattgttcaaaggtcagtactaccgcatatgt
ctgtctgctgagagaaggggagagggtagggaccatcacttgcctacggc
agtaagaactcagagaccgtgcaggccaaggcttaaagctgtactctatc
agctgtctagcttctgtcactagctctcttatatgtgatatgtggctggt
gtgtaacaagctgtgacacttgtgtctgttgtttagtagatttacctgga
cctgtttttatggcgctgactggggcctttcaggaaataggaatgggcaa
gaatgctttgaaatctttgctctggcctctcctagacaacctattggcca
aaataagccatgtgatttaggccatatcccaaattgagaggacactgtga
agttacacagcaatgcgagagagaagtggagccattaataaaatcttctc
attatatgtccagagtaaaaactcaactaaagtcttattgaatctggcta
ccagagcccaggttgacttggaggtaatgggttacatcgtgatttatatc
atgaccagtaatttcttgtttatcagatgatcagtcgtcttcaccaaaat
gtcagagcaatgacgactgctgcttcttctgttgtggagaaacagctaac
agctgaaatccatttatagtttagtaccaaggtcttactactgc

gaattccaaacatcacataatcacagaaactatctacagctggcaaaacc
acgcctctgccagagcacaaggcaaatcatagtcagctgctggggacagg
ctgaaagagcctcaaatcccacacctgggattaaaatgaaaacctactct
tatatttctgtgtttttcagagaagccaaaattcccactacagcctttgg
tcacatttgactgtttaactgttatttgaaaaataagccgttggcctggg
atatgaagttcatgtatttgttttgaattccatgcctctacaaataccag
atgaaactgcattgtaattccaatattacagggaaattcagcaaagaatg
gtctggatttcatgtctcatttcacataaggatttactagttaacccact
ctactatgttttgaagtgagaagcatgattttactaacccatggagaaca
tctaaatggtgaatggatttcttcccttgccttaaaacactgcctgccat
tacagcaatggaaaaaaaatgatgtatatgtggacccctgggacagaaaa
attgataagagctcccaacttctttctcataaacaactgatattttaaag
ctattagcgcaggagttggcattcagggacagttcatttatcatccattg
gctggtgagggtgccaggccttgcagtcaggttctgaaaaatgggtcccg
tgctcatccactattgcagaacagctgctccttcccaaagtttaatcaga
ttttctcagcatcacatgccccaggaaggcagaactcacatcagacctgt
aataagcctgccatgtaaatgcattacaaaacccaagtaatatgaacaga
ttatatttcttcaggccaagagggattttaatttggtccaaaattatgac
tgaatattgacttgaattcttgttccttgaaaaaaaattatagaaaaaga
aatcagaactgagtgctttaaataaagatatcctgatatgcaggttgaaa
agtcaaacttgagtttgttacaaataagcatgctctgatgaaaaagtctc
agtgttagggctctaaaactatagagttctgcgttttatagtgtcttttt
acccctggtatggagagcctgacttccttcagtctcttacgtcttatgga
ttagtcaactaaaaaatttcag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_94637711_94638861
seq2: B6Ng01-256G11.b_44_1187

seq1  GAATTCCAGGACACACTGAAGGCTTTAGAACTCCTCCTGTCCATACCCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGACACACTGAAGGCTTTAGAACTCCTCCTGTCCATACCCTT  50

seq1  CCTTTGCAGCAGAGGAATTAAGACCCAGCTAGACAAGTACCCGCATTTAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGCAGCAGAGGAATTAAGACCCAGCTAGACAAGTACCCGCATTTAC  100

seq1  AAGTCAATCAGCAACTTTGAACCTGTGGTGAGAGTGGTCACCACCCAGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCAATCAGCAACTTTGAACCTGTGGTGAGAGTGGTCACCACCCAGTG  150

seq1  GCAATCCTCTCTCACTGGAATGGAATTTCATTCCTTTACACATTCAGCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATCCTCTCTCACTGGAATGGAATTTCATTCCTTTACACATTCAGCAA  200

seq1  CCCAGGGTTTGATTCATTCTGGCTTGTTGTCTGACTGTTTCATTTCCAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGGGTTTGATTCATTCTGGCTTGTTGTCTGACTGTTTCATTTCCAAT  250

seq1  TTTCTATCGTAAAATGTCAACTTATCCTCAACGTGGTCATTTTCCCACTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTATCGTAAAATGTCAACTTATCCTCAACGTGGTCATTTTCCCACTT  300

seq1  CTGTGTCCTCTGGCTTTCTTTGTTCTGGGTCTAAACTACAGCGTCATGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTCCTCTGGCTTTCTTTGTTCTGGGTCTAAACTACAGCGTCATGCT  350

seq1  TGTACCTTAGTGCAGCTGCCAATCAGAACTTCTGCTTAACCACTGGGCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACCTTAGTGCAGCTGCCAATCAGAACTTCTGCTTAACCACTGGGCCA  400

seq1  TTGTAAAACAGTGTGCATCCTCTGTCAGTCACACATTGCTTCACCAAAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAAAACAGTGTGCATCCTCTGTCAGTCACACATTGCTTCACCAAAAT  450

seq1  GACAAGAAAACCATGGCAAATTGTTCAAAGGTCAGTACTACCGCATATGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAGAAAACCATGGCAAATTGTTCAAAGGTCAGTACTACCGCATATGT  500

seq1  CTGTCTGCTGAGAGAAGGGGAGAGGGTAGGGACCATCACTTGCCTACGGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTGCTGAGAGAAGGGGAGAGGGTAGGGACCATCACTTGCCTACGGC  550

seq1  AGTAAGAACTCAGAGACCGTGCAGGCCAAGGCTTAAAGCTGTACTCTATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAGAACTCAGAGACCGTGCAGGCCAAGGCTTAAAGCTGTACTCTATC  600

seq1  AGCTGTCTAGCTTCTGTCACTAGCTCTCTTATATGTGATATGTGGCTGGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGTCTAGCTTCTGTCACTAGCTCTCTTATATGTGATATGTGGCTGGT  650

seq1  GTGTAACAAGCTGTGACACTTGTGTCTGTTGTTTAGTAGATTTACCTGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAACAAGCTGTGACACTTGTGTCTGTTGTTTAGTAGATTTACCTGGA  700

seq1  CCTGTTTTTATGGCGCTGACTGGGGCCTTTCAGGAAATAGGAATGGGCAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTTTTTATGGCGCTGACTGGGGCCTTTCAGGAAATAGGAATGGGCAA  750

seq1  GAATGCTTTGAAATCTTTGCTCTGGCCTCTCCTAGACAACCTATTGGCCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGCTTTGAAATCTTTGCTCTGGCCTCTCCTAGACAACCTATTGGCCA  800

seq1  AAATAAGCCATGTGATTTAGGCCATATCCCAAATTGAGAGGACACTGTGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAGCCATGTGATTTAGGCCATATCCCAAATTGAGAGGACACTGTGA  850

seq1  AGTTACACAGCAATGCGAGAGAGAAGTGGAGCCATTAATAAAATCTTCTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTACACAGCAATGCGAGAGAGAAGTGGAGCCATTAATAAAATCTTCTC  900

seq1  ATTATATGTCCAGAGTAAAAACTCAACTAAAGTCTTATTGAATCTGGCTA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATATGTCCAGAGTAAAAACTCAACTAAAGTCTTATTGAATCTGGCTA  950

seq1  CCAGAGCCCAGGTTGACTTGGAGGTAATGGGTTACAATCGTGATTTATAT  1000
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  CCAGAGCCCAGGTTGACTTGGAGGTAATGGGTTAC-ATCGTGATTTATAT  999

seq1  CAATGACCAGTAATTTC-TGTTTATCAAGATGATCAGTCGTCTTCACC-A  1048
      | ||||||||||||||| |||||||| ||||||||||||||||||||| |
seq2  C-ATGACCAGTAATTTCTTGTTTATC-AGATGATCAGTCGTCTTCACCAA  1047

seq1  AATGTCAAGAGCAAATGACGACTGCTGCTTCTTCCTGTTGTGAAG-AACA  1097
      |||||| ||||| |||||||||||||||||||| |||||||| || ||||
seq2  AATGTC-AGAGC-AATGACGACTGCTGCTTCTT-CTGTTGTGGAGAAACA  1094

seq1  GCTAACAGCTG-AATCTATTTAATTTAGTTTAGTAACCAAGTCTTTACTA  1146
      ||||||||||| |||| |||||   ||||||||| ||||||   ||||| 
seq2  GCTAACAGCTGAAATCCATTTA---TAGTTTAGT-ACCAAGGTCTTACT-  1139

seq1  ACTGC  1151
      |||||
seq2  ACTGC  1144


seq1: chr9_94775217_94776390
seq2: B6Ng01-256G11.g_62_1233 (reverse)

seq1  CTGAA--TTTTTAGTGGACTA--TCAT-AGACGT-AGAGACTGAAGGAAG  44
      |||||  |||||||| |||||   ||| |||||| |||||||||||||||
seq2  CTGAAATTTTTTAGTTGACTAATCCATAAGACGTAAGAGACTGAAGGAAG  50

seq1  TCAAGGCTCT-CATACCAGGGGGTAAAAAAGACAACCTAATAAAACGGCA  93
      || ||||||| |||||||||||   |||||||||  || ||||||| |||
seq2  TC-AGGCTCTCCATACCAGGGG--TAAAAAGACA--CT-ATAAAAC-GCA  93

seq1  GAACTCTATAGTTTTAGGAGCCCT-ACACTGAGACTTTTTCATCAAGAGG  142
      |||||||||||||||| ||||||| ||||||||||||||||||| ||| |
seq2  GAACTCTATAGTTTTA-GAGCCCTAACACTGAGACTTTTTCATC-AGA-G  140

seq1  CATGCTTTATTTGTAACAAACTCAAGTTTGACTTTTCAACCTGCATATCA  192
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGC-TTATTTGTAACAAACTCAAGTTTGACTTTTCAACCTGCATATCA  189

seq1  GGATATCTTTTATTTAAAGCACTCAGTTCTGATTTC-TTTTCTATAATTT  241
      ||||||| |||||||||||||||||||||||||||| |||||||||||||
seq2  GGATATC-TTTATTTAAAGCACTCAGTTCTGATTTCTTTTTCTATAATTT  238

seq1  TTTTTCAAGGAACAAGAATTCAAGTCAATATTCAGTCATAATTTTGGACC  291
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCAAGGAACAAGAATTCAAGTCAATATTCAGTCATAATTTTGGACC  288

seq1  AAATTAAAATCCCTCTTGGCCTGAAG-AATATAATCTGTTCATATTACTT  340
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  AAATTAAAATCCCTCTTGGCCTGAAGAAATATAATCTGTTCATATTACTT  338

seq1  GGGTTTTGTAATGCATTTACATGGCAGGCTTATTACAGGTCTGATGTGAG  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTTTGTAATGCATTTACATGGCAGGCTTATTACAGGTCTGATGTGAG  388

seq1  TTCTGCCTTCCTGGGGCATGTGATGCTGAGAAAATCTGATTAAACTTTGG  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGCCTTCCTGGGGCATGTGATGCTGAGAAAATCTGATTAAACTTTGG  438

seq1  GAAGGAGCAGCTGTTCTGCAATAGTGGATGAGCACGGGACCCATTTTTCA  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGAGCAGCTGTTCTGCAATAGTGGATGAGCACGGGACCCATTTTTCA  488

seq1  GAACCTGACTGCAAGGCCTGGCACCCTCACCAGCCAATGGATGATAAATG  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCTGACTGCAAGGCCTGGCACCCTCACCAGCCAATGGATGATAAATG  538

seq1  AACTGTCCCTGAATGCCAACTCCTGCGCTAATAGCTTTAAAATATCAGTT  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGTCCCTGAATGCCAACTCCTGCGCTAATAGCTTTAAAATATCAGTT  588

seq1  GTTTATGAGAAAGAAGTTGGGAGCTCTTATCAATTTTTCTGTCCCAGGGG  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTATGAGAAAGAAGTTGGGAGCTCTTATCAATTTTTCTGTCCCAGGGG  638

seq1  TCCACATATACATCATTTTTTTTCCATTGCTGTAATGGCAGGCAGTGTTT  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACATATACATCATTTTTTTTCCATTGCTGTAATGGCAGGCAGTGTTT  688

seq1  TAAGGCAAGGGAAGAAATCCATTCACCATTTAGATGTTCTCCATGGGTTA  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGCAAGGGAAGAAATCCATTCACCATTTAGATGTTCTCCATGGGTTA  738

seq1  GTAAAATCATGCTTCTCACTTCAAAACATAGTAGAGTGGGTTAACTAGTA  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAATCATGCTTCTCACTTCAAAACATAGTAGAGTGGGTTAACTAGTA  788

seq1  AATCCTTATGTGAAATGAGACATGAAATCCAGACCATTCTTTGCTGAATT  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCTTATGTGAAATGAGACATGAAATCCAGACCATTCTTTGCTGAATT  838

seq1  TCCCTGTAATATTGGAATTACAATGCAGTTTCATCTGGTATTTGTAGAGG  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTGTAATATTGGAATTACAATGCAGTTTCATCTGGTATTTGTAGAGG  888

seq1  CATGGAATTCAAAACAAATACATGAACTTCATATCCCAGGCCAACGGCTT  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGAATTCAAAACAAATACATGAACTTCATATCCCAGGCCAACGGCTT  938

seq1  ATTTTTCAAATAACAGTTAAACAGTCAAATGTGACCAAAGGCTGTAGTGG  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTCAAATAACAGTTAAACAGTCAAATGTGACCAAAGGCTGTAGTGG  988

seq1  GAATTTTGGCTTCTCTGAAAAACACAGAAATATAAGAGTAGGTTTTCATT  1040
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTTGGCTTCTCTGAAAAACACAGAAATATAAGAGTAGGTTTTCATT  1038

seq1  TTAATCCCAGGTGTGGGATTTGAGGCTCTTTCAGCCTGTCCCCAGCAGCT  1090
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATCCCAGGTGTGGGATTTGAGGCTCTTTCAGCCTGTCCCCAGCAGCT  1088

seq1  GACTATGATTTGCCTTGTGCTCTGGCAGAGGCGTGGTTTTGCCAGCTGTA  1140
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTATGATTTGCCTTGTGCTCTGGCAGAGGCGTGGTTTTGCCAGCTGTA  1138

seq1  GATAGTTTCTGTGATTATGTGATGTTTGGAATTC  1174
      ||||||||||||||||||||||||||||||||||
seq2  GATAGTTTCTGTGATTATGTGATGTTTGGAATTC  1172


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