BAC Information

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BAC

Clone NameB6Ng01-256L06
Chromosome9 (Build37)
Map Location 70,055,118 - 70,165,818
singlet/doubletdoublet
Overlap geneMyo1e
Upstream geneRora, Narg2, EG665815, EG244913, Anxa2, Foxb1, Bnip2, LOC624164, Gtf2a2, Gcnt3, 6430514L14Rik
Downstream geneCcnb2, Rnf111, Sltm, B230380D07Rik, Adam10, Cycs-ps1, Lipc, LOC100041622, LOC100041628, Aqp9, 1700020I22Rik, LOC100041660, Aldh1a2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-256L06.bB6Ng01-256L06.g
ACCGA062594GA062595
length1,033914
definitionB6Ng01-256L06.b B6Ng01-256L06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(70,055,118 - 70,056,146)(70,165,349 - 70,165,818)
sequence
gaattctccatttatggacagattgcccggcccgagcccagcctgagcca
gagaagagttcggattaagtgttaagagaaagcgggtccaggcaaagcag
ttggacaagcaatcccgcagagcgcatcagggtgcatctctagacagttg
gggatcgccaggtctgagtgtgcaccgggtctgctaagttttgccttcac
ctagcgtttcggatcccgcctggatggagtccctcttggatttccattgg
ctcctgtgagtgcttgggtgtcgggagcttgttttttggcgaagggaacc
aacttttgaagttcgcccaggagaccgcgttccagcctcagtgcctaggc
agcgggacccggcggaggcgcgaccgcggcgggagtcaccatggtgagtt
ggctgcgccgcgtcccaggacgcctgaccctgggatggggcaggaagccc
cggagcgggcacctaccttgggcaagctgcccaggccagggggtggagaa
ggtggacgcgggagtgtgcacttctggagcgctgatttcctgctgtttgc
tgtaaaccgggtcttaaacgggaagagggagagaggagggacaagaaaaa
ctctctggagtgactttctgcgccgcgaaagttttggtgccaatgttgtt
gtggctgccagctgtctgaagcttgagagtgggcacgtctgttttcaccg
gcacagccgtgggaccggagacttttttctcctctagagaaggtgagggg
cacgcctgtgtccctcgggtcctctcccctgggcaggcactggcgtgagc
tccctggcaggctgatcccgcagttgttctcctggcattggggaggacct
aggcagccccagccttgcgctggtgatgggccgagcgctgcacaaaaggc
aggcacggggcgtctaggtactgcggagcacatggcggtggccccggctg
catgtactctgacgacagcgcgcaacggcagcccaactggcgggagccag
ggctgtaaggatccctgtgtagggctaacacct
gaattctttatttgtctgctccatttcccagtgctagaatacattcgtgt
aatcactacatttagcttatgttggggataaaatctggggctttgtgcac
actagggaaggactcatgcccagccagagaagcttcctaacgctgagctg
caagctcacctcaagagatcaacttcagcccttaagtggggttcagacta
cagctcagctggaaaagtgcttacccagcatcctagggccctgcctagga
tgggttccatccctagcaccaaataacctgggtgtggtgatgcattccta
aaacctgaggtagagataggaagttcagaagtttaaggctatcctttggc
aacttagtaagatagccatcttaaaaatgaagatgaagacaaagatataa
aagatgaagaggagaaggaggaggaagaggaaaagaggaggaagaagagt
gggaggagaaagaaggggaatcctgttcaccaccatttccctttatcatt
ctgccccaagaaatgataatataaacacacactaagataaaacgagacac
acagattggaatatgattaaaacaaccaaacaaaaagtgacaaagaaatg
catgtagtcctggagatacacacattttgcacacagaggaatcccataaa
acaaacaaacaaataaacaaaaacaaaaatgaaagctctatgtaaagggc
ctataaagtagaagagaacaacaatgcttcagactttagcactgtaagac
gaagtatctccagataccactgagttcagggttttgccatctgctgggtg
tgcctacccttaaggaggtttttcccccctcattgagacttattttgaga
aatctttttttttcattgtgcaagtggcgattaaactagtgatgggtttc
tcagttagggatgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_70055118_70056146
seq2: B6Ng01-256L06.b_44_1076

seq1  GAATTCTCCATTTATGGACAGATTGCCCGGCCCGAGCCCAGCCTGAGCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCATTTATGGACAGATTGCCCGGCCCGAGCCCAGCCTGAGCCA  50

seq1  GAGAAGAGTTCGGATTAAGTGTTAAGAGAAAGCGGGTCCAGGCAAAGCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGAGTTCGGATTAAGTGTTAAGAGAAAGCGGGTCCAGGCAAAGCAG  100

seq1  TTGGACAAGCAATCCCGCAGAGCGCATCAGGGTGCATCTCTAGACAGTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGACAAGCAATCCCGCAGAGCGCATCAGGGTGCATCTCTAGACAGTTG  150

seq1  GGGATCGCCAGGTCTGAGTGTGCACCGGGTCTGCTAAGTTTTGCCTTCAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATCGCCAGGTCTGAGTGTGCACCGGGTCTGCTAAGTTTTGCCTTCAC  200

seq1  CTAGCGTTTCGGATCCCGCCTGGATGGAGTCCCTCTTGGATTTCCATTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCGTTTCGGATCCCGCCTGGATGGAGTCCCTCTTGGATTTCCATTGG  250

seq1  CTCCTGTGAGTGCTTGGGTGTCGGGAGCTTGTTTTTTGGCGAAGGGAACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGTGAGTGCTTGGGTGTCGGGAGCTTGTTTTTTGGCGAAGGGAACC  300

seq1  AACTTTTGAAGTTCGCCCAGGAGACCGCGTTCCAGCCTCAGTGCCTAGGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTTGAAGTTCGCCCAGGAGACCGCGTTCCAGCCTCAGTGCCTAGGC  350

seq1  AGCGGGACCCGGCGGAGGCGCGACCGCGGCGGGAGTCACCATGGTGAGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGGGACCCGGCGGAGGCGCGACCGCGGCGGGAGTCACCATGGTGAGTT  400

seq1  GGCTGCGCCGCGTCCCAGGACGCCTGACCCTGGGATGGGGCAGGAAGCCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGCGCCGCGTCCCAGGACGCCTGACCCTGGGATGGGGCAGGAAGCCC  450

seq1  CGGAGCGGGCACCTACCTTGGGCAAGCTGCCCAGGCCAGGGGGTGGAGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGAGCGGGCACCTACCTTGGGCAAGCTGCCCAGGCCAGGGGGTGGAGAA  500

seq1  GGTGGACGCGGGAGTGTGCACTTCTGGAGCGCTGATTTCCTGCTGTTTGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGACGCGGGAGTGTGCACTTCTGGAGCGCTGATTTCCTGCTGTTTGC  550

seq1  TGTAAACCGGGTCTTAAACGGGAAGAGGGAGAGAGGAGGGACAAGAAAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAACCGGGTCTTAAACGGGAAGAGGGAGAGAGGAGGGACAAGAAAAA  600

seq1  CTCTCTGGAGTGACTTTCTGCGCCGCGAAAGTTTTGGTGCCAATGTTGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTGGAGTGACTTTCTGCGCCGCGAAAGTTTTGGTGCCAATGTTGTT  650

seq1  GTGGCTGCCAGCTGTCTGAAGCTTGAGAGTGGGCACGTCTGTTTTCACCG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCTGCCAGCTGTCTGAAGCTTGAGAGTGGGCACGTCTGTTTTCACCG  700

seq1  GCACAGCCGTGGGACCGGAGACTTTTTTCTCCTCTAGAGAAGGTGAGGGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAGCCGTGGGACCGGAGACTTTTTTCTCCTCTAGAGAAGGTGAGGGG  750

seq1  CACGCCTGTGTCCCTCGGGTCCTCTCCCCTGGGCAGGCACTGGCGTGAGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGCCTGTGTCCCTCGGGTCCTCTCCCCTGGGCAGGCACTGGCGTGAGC  800

seq1  TCCCTGGCAGGCTGATCCCGCAGTTGTTCTCCTGGCATTGGGGAGGACCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTGGCAGGCTGATCCCGCAGTTGTTCTCCTGGCATTGGGGAGGACCT  850

seq1  AGGCAGCCCC-GCC-TGCGCTGGTGATGGGCCGAGCGCTGCAC-AAAGGC  897
      |||||||||| ||| |||||||||||||||||||||||||||| ||||||
seq2  AGGCAGCCCCAGCCTTGCGCTGGTGATGGGCCGAGCGCTGCACAAAAGGC  900

seq1  AGGCA-GGGGCG-CCAGGTACTGCGGAGCACCTGGCGGTGGCCCGGGCTG  945
      ||||| |||||| | |||||||||||||||| |||||||||||| |||||
seq2  AGGCACGGGGCGTCTAGGTACTGCGGAGCACATGGCGGTGGCCCCGGCTG  950

seq1  CAGGGACTCTGACGACAGCGCGCAGCGGCAGCCAAACTGGCCGGGAGCCC  995
      || | ||||||||||||||||||| |||||||| |||||| |||||| ||
seq2  CATGTACTCTGACGACAGCGCGCAACGGCAGCCCAACTGG-CGGGAG-CC  998

seq1  AGGCCTGT-AGGGTCCCTGTGTAGGGTAAACACCT  1029
      ||| |||| ||| |||||||||||||  |||||||
seq2  AGGGCTGTAAGGATCCCTGTGTAGGGCTAACACCT  1033

seq1: chr9_70165349_70165818
seq2: B6Ng01-256L06.g_65_534 (reverse)

seq1  TTCCCCTTCTTTCTCCTCCCACTCTTCTTCCTCCTCTTTTCCTCTTCCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCCTTCTTTCTCCTCCCACTCTTCTTCCTCCTCTTTTCCTCTTCCTC  50

seq1  CTCCTTCTCCTCTTCATCTTTTATATCTTTGTCTTCATCTTCATTTTTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTCTCCTCTTCATCTTTTATATCTTTGTCTTCATCTTCATTTTTAA  100

seq1  GATGGCTATCTTACTAAGTTGCCAAAGGATAGCCTTAAACTTCTGAACTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGCTATCTTACTAAGTTGCCAAAGGATAGCCTTAAACTTCTGAACTT  150

seq1  CCTATCTCTACCTCAGGTTTTAGGAATGCATCACCACACCCAGGTTATTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATCTCTACCTCAGGTTTTAGGAATGCATCACCACACCCAGGTTATTT  200

seq1  GGTGCTAGGGATGGAACCCATCCTAGGCAGGGCCCTAGGATGCTGGGTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCTAGGGATGGAACCCATCCTAGGCAGGGCCCTAGGATGCTGGGTAA  250

seq1  GCACTTTTCCAGCTGAGCTGTAGTCTGAACCCCACTTAAGGGCTGAAGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTTTTCCAGCTGAGCTGTAGTCTGAACCCCACTTAAGGGCTGAAGTT  300

seq1  GATCTCTTGAGGTGAGCTTGCAGCTCAGCGTTAGGAAGCTTCTCTGGCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTCTTGAGGTGAGCTTGCAGCTCAGCGTTAGGAAGCTTCTCTGGCTG  350

seq1  GGCATGAGTCCTTCCCTAGTGTGCACAAAGCCCCAGATTTTATCCCCAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATGAGTCCTTCCCTAGTGTGCACAAAGCCCCAGATTTTATCCCCAAC  400

seq1  ATAAGCTAAATGTAGTGATTACACGAATGTATTCTAGCACTGGGAAATGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGCTAAATGTAGTGATTACACGAATGTATTCTAGCACTGGGAAATGG  450

seq1  AGCAGACAAATAAAGAATTC  470
      ||||||||||||||||||||
seq2  AGCAGACAAATAAAGAATTC  470