BAC Information

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BAC

Clone NameB6Ng01-257I13
Chromosome9 (Build37)
Map Location 9,250,216 - 9,251,345
singlet/doubletsinglet
Overlap genenone
Upstream geneTrpc6, Pgr, 9030420J04Rik
Downstream geneCntn5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-257I13.bB6Ng01-257I13.g
ACCGA063207GA063208
length1,1221,203
definitionB6Ng01-257I13.b B6Ng01-257I13.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcaaagtcaccctcacatacagaaagagtttgagaaatcctggcct
acatgagactaaacaaatcagatacctgtgatgagcttggtgttctatca
gaggggaaaactaggacctccacagaagcaaaaagagaaatccccatctt
caagtgtttaatttcgttgaagtagataagttctgggttgaggctggacc
atgattccaacaagtaaagtgaacaagttgctatgatctccagggtcaag
aaaatcttttctaatgaaatgtaagcaactaagatcaagaaataaaaatc
tatatctgtactactacagcctggctttgttccataaagccagtctctca
gtttgcagacattccccacatattaggggatagatggagcaggggtttca
aatgcttacagttcttccagaaaattgaggtatacatcctcaaacctaca
tcaagctggtaacaactatagtatgtaactccagttccagggaaccctga
ggcctttctctggcttttgaatacctgcacacactgtgcacaaaaaccca
tgcagttacacatatttgcatgcatagaaataaataaatatctagttctg
ccttcacatgggggacagaattgaattaaatatatttagtgtctgtcatt
ctctctccaagtcccaatagatgattcaactctgtaccatctcatatgct
ggttaactcatatgagaacgtagtttgcatattatatgtagaccagaaaa
tttgtctcgtaaataaagccaaatgttatatttgaggctttgtcctattt
tccaaggtaaactgaacttacaaacacacacaccctctctcttatagtcc
cagggaaaggggcaatcaaaaccaaaggacagagtcaaagtgaatgacag
ggctggctagactgtcacatgcctatagcctcagaatttagaaggtagag
gcaggagaatcatgaggtcagtaccattctagctgcatagtgagtttgaa
gcagcctgggcttcataaaaatgcactttaaaccccacaaaaacagacac
aaatcagaacaagaacaccttgtaacttcaactgtggactgaaccttgga
gatttctgtgtgctttggaacg

gaattctcacctgaggaatactgaatggctgaaaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaggctaatatcaaaaattcaggtgacagcag
atgctgtcgaggatgtagagaaagaggaacactcctccatttttggtggg
attgcaagcttgtacaaccactctggaaatcagtctggcggttcctcaga
aaattggacacagtactaccagaggatcacgaaattcctctcctgggcat
atatcctgaagatgttccaactggtaagaaggatacctatgctatccact
atgttcatagcagccttatttataatagccagaaggtggaaagaacccag
gtgccccttaacagaataacagatatagaaattgtggtacatttacacaa
tggagtactactcagctattaaaaagaatgaatttacgaaattcctaggc
aaatagatggacctggagggtcctgagtgaggttacccaatcacaaaaga
actcacacaatatgtactcactgataagtggatattagcccagaaactta
gaatacccaagatataagatataatttgctaaacacatgaaactcaataa
gaaggaagaccaaagtgtggacactttgccttttcttagaattgggaaca
aaacacccatggaaggagttacagagacacagtttggagctgagacgaaa
ggatctagaggctgccatatccggggatccatcctataatcagcttccaa
atgctgacaccattgcatacactagcaagattttgttgaaaggaaccaga
tatagctctctcttgtgagactatgctggggcctagcaaacacagaagtg
gatgctcacagtcagctattggatggatcacaggcccccatggaggagct
agagaaagtaccaggaactaaagggatctgcaccctatagtggacaccat
tatgaactacccagtactcccccagagctcgttgtcctctagctgttatt
gttatcagaaccatgggcctggtcggccatcagtgtaggagaaggcccat
tgtcatggcaaccttattgcctcagacagggaattgccagctagaattgc
aagtgcctgggctgggctatcacctagtgggtgctgtagcggtggtacga
aga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_9250216_9251345
seq2: B6Ng01-257I13.b_50_1171 (reverse)

seq1  CGTTCCAAAGCACACAGAAATCTCAAGGGTTCAGTTCCACAGTTTTGGAG  50
      |||||||||||||||||||||||| | ||||||| |||||||  ||| ||
seq2  CGTTCCAAAGCACACAGAAATCTCCAAGGTTCAG-TCCACAG--TTGAAG  47

seq1  TTACCAGGTGTTCTTGTCTGGTTTTGTTTGTCTGTTTTTGTGGGGTTTTA  100
      |||| ||||||||||||   | ||||  ||||||||||||||||| ||||
seq2  TTACAAGGTGTTCTTGTTCTGATTTG--TGTCTGTTTTTGTGGGG-TTTA  94

seq1  AAGTGCATTTTTATGAAGCCCAGGCTGGCTTCAAACTCACTATGCAGCCT  150
      |||||||||||||||||||||||||| |||||||||||||||||||| ||
seq2  AAGTGCATTTTTATGAAGCCCAGGCT-GCTTCAAACTCACTATGCAG-CT  142

seq1  AGAATGGTACTGACCTCATGATTCTCCTGCCTCTACCTTCTAAATTCTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATGGTACTGACCTCATGATTCTCCTGCCTCTACCTTCTAAATTCTGA  192

seq1  GGCTATAGGCATGTGACAGTCTAGCCAGCCCTGTCATTCACTTTGACTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTATAGGCATGTGACAGTCTAGCCAGCCCTGTCATTCACTTTGACTCT  242

seq1  GTCCTTTGGTTTTGATTGCCCCTTTCCCTGGGACTATAAGAGAGAGGGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTTTGGTTTTGATTGCCCCTTTCCCTGGGACTATAAGAGAGAGGGTG  292

seq1  TGTGTGTTTGTAAGTTCAGTTTACCTTGGAAAATAGGACAAAGCCTCAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTTTGTAAGTTCAGTTTACCTTGGAAAATAGGACAAAGCCTCAAA  342

seq1  TATAACATTTGGCTTTATTTACGAGACAAATTTTCTGGTCTACATATAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAACATTTGGCTTTATTTACGAGACAAATTTTCTGGTCTACATATAAT  392

seq1  ATGCAAACTACGTTCTCATATGAGTTAACCAGCATATGAGATGGTACAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAAACTACGTTCTCATATGAGTTAACCAGCATATGAGATGGTACAGA  442

seq1  GTTGAATCATCTATTGGGACTTGGAGAGAGAATGACAGACACTAAATATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGAATCATCTATTGGGACTTGGAGAGAGAATGACAGACACTAAATATA  492

seq1  TTTAATTCAATTCTGTCCCCCATGTGAAGGCAGAACTAGATATTTATTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATTCAATTCTGTCCCCCATGTGAAGGCAGAACTAGATATTTATTTA  542

seq1  TTTCTATGCATGCAAATATGTGTAACTGCATGGGTTTTTGTGCACAGTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTATGCATGCAAATATGTGTAACTGCATGGGTTTTTGTGCACAGTGT  592

seq1  GTGCAGGTATTCAAAAGCCAGAGAAAGGCCTCAGGGTTCCCTGGAACTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCAGGTATTCAAAAGCCAGAGAAAGGCCTCAGGGTTCCCTGGAACTGG  642

seq1  AGTTACATACTATAGTTGTTACCAGCTTGATGTAGGTTTGAGGATGTATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTACATACTATAGTTGTTACCAGCTTGATGTAGGTTTGAGGATGTATA  692

seq1  CCTCAATTTTCTGGAAGAACTGTAAGCATTTGAAACCCCTGCTCCATCTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAATTTTCTGGAAGAACTGTAAGCATTTGAAACCCCTGCTCCATCTA  742

seq1  TCCCCTAATATGTGGGGAATGTCTGCAAACTGAGAGACTGGCTTTATGGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCTAATATGTGGGGAATGTCTGCAAACTGAGAGACTGGCTTTATGGA  792

seq1  ACAAAGCCAGGCTGTAGTAGTACAGATATAGATTTTTATTTCTTGATCTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGCCAGGCTGTAGTAGTACAGATATAGATTTTTATTTCTTGATCTT  842

seq1  AGTTGCTTACATTTCATTAGAAAAGATTTTCTTGACCCTGGAGATCATAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGCTTACATTTCATTAGAAAAGATTTTCTTGACCCTGGAGATCATAG  892

seq1  CAACTTGTTCACTTTACTTGTTGGAATCATGGTCCAGCCTCAACCCAGAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTTGTTCACTTTACTTGTTGGAATCATGGTCCAGCCTCAACCCAGAA  942

seq1  CTTATCTACTTCAACGAAATTAAACACTTGAAGATGGGGATTTCTCTTTT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATCTACTTCAACGAAATTAAACACTTGAAGATGGGGATTTCTCTTTT  992

seq1  TGCTTCTGTGGAGGTCCTAGTTTTCCCCTCTGATAGAACACCAAGCTCAT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTCTGTGGAGGTCCTAGTTTTCCCCTCTGATAGAACACCAAGCTCAT  1042

seq1  CACAGGTATCTGATTTGTTTAGTCTCATGTAGGCCAGGATTTCTCAAACT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGGTATCTGATTTGTTTAGTCTCATGTAGGCCAGGATTTCTCAAACT  1092

seq1  CTTTCTGTATGTGAGGGTGACTTTGAATTC  1130
      ||||||||||||||||||||||||||||||
seq2  CTTTCTGTATGTGAGGGTGACTTTGAATTC  1122


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