BAC Information

Click to search

BAC

Clone NameB6Ng01-258L15
Chromosome9 (Build37)
Map Location 9,001,822 - 9,002,964
singlet/doubletsinglet
Overlap gene9030420J04Rik
Upstream geneYap1, EG665090, 9230110C19Rik, AK129341, LOC100039855, 1700018P22Rik, LOC665108, 1700128F08Rik, Trpc6, Pgr
Downstream geneCntn5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-258L15.bB6Ng01-258L15.g
ACCGA064090GA064091
length1,1311,193
definitionB6Ng01-258L15.b B6Ng01-258L15.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcaaactagacaaatccaaaaccaacatgcaaactgtatttcacgt
tttttgccaagaaagtcattgttacctttaataactagcatgtgcctata
actatccaggcagaaagtatcctaaagggaacacttgtgttccctttggt
tgtcagactattaaaacaatggggcccccaaggaactggaattcctccaa
gaaactcatatagaaccgtgaaaaaagcagaagcctagtatcccagaggc
gcccttctcctgggagacattttacacagttctgacaacttagtagacaa
ccttgtaagagatagtcaatgatggggcaggctattccttgaccaggact
gcttagtcatacatatatttctcttgccctctctttaaacacaaatcttt
ttatcacaccacaaagagggtcctgttggaggatgtcaccaggcctcttt
gttcctcttcccgaatgtgtccacattgaataaatcttatctttctgctt
ttctttattacctgtctctttaattagtctaccaagaacaggtggacagg
cctggcttattttgttaaagctctgtggaatgacttgcaagaacatgagt
ttgactctaactacagatgatggcatgggatgatgtgtgcttaagacagg
cttgctgggaagttcatatacttttggaaaattgaccaaaaaaaaaaaaa
aaagcaataaacaacagcatgagtataattaaaaattaacaccacgaagc
tttggttgagtaacttccagaagacagacagacagacagacagacagaca
cagacacagacacagacacacacacacacacacacacacacacacacaca
cacacacacacagagcaactatccagttgtggtagctcagaaatgcccca
gtatatctgaaaggatcaagagtgaggcagtttgttctaataagtgagct
catttatgacgtacctcttctaacgaagaaaactttgggaaactggccac
cttcaagcaatttcattaatccaattataccaaactcctctgcgatgaga
tttggaaagaatgagaaactgactgagattgaagcagcaggaacgactca
gactgaaacgaagccaagtacatcagaaaaa

gaattcaccttcaactagactaggctggtgggccatgaagccccagggac
tgtctgtttctgtctccccagtgttgtgaatgaacaatcgaaccaccaca
tccaggtgtttgtttgcttgtttgtttctctctctttttttcttttctcc
tctctctctctctctctttttctttgagacagggtttctttgtgtagccc
tggctgtcctggaactcactctgtagaccaggttggcctcgaactcagaa
atctgcctgcctctgcctcccaagtgtgccaccactgcccagctttttgt
ttttaatgtgggtctagggctgaaactttggtcttcatgcttacatggta
agcactttaatgagcaagtcatctcttcaacccagctttcgtcaactaaa
attcatcaaccagtaacccaaacacatgtagacctctacatgtatgaagt
ggtatttgataatgttctttgctgtgtatacagtcagaaaaaaagcaaaa
accgaaaaatcaaactctgtttatagactttttcttcatcattttcttag
tctctgttctatggctgtgaagagacactgtgacaaaggcaactcttata
agcgaaaacatctaattggaggcttgctgatgatttcagaggtttagtcc
atggtgggaaggatggaggcatagtgctggagcagtacctgagagcttta
catcatgatctgcagggtatcatacagacagacagacagacacacacaca
caccccgagagagagagacagatggagagacaaagagagacagagataga
acagtgacagacactgggcctggtattggcttgtgtatcctctgagccca
ctcttagtgaaacacctcctccaacaaggccatagctcccaattcttccc
agatagttctaataactgggaatcaaacatttcaaacatatgagcccatg
ggaagaagtttctcatcaaccaccacagtcatttctccaaagcatgtcat
gtaacagtgtttacattacctgctgatgaaagttgtcagcgctgagttac
agtggtggggtggattttgttatggattcctatggcagaatctgttgacc
attacataggtgatgcttttgggaatttccgaacgctctagcttgctcta
tactggtgcatcctaaaatagaaatgctaactatgcattgtga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_9001822_9002964
seq2: B6Ng01-258L15.b_51_1181

seq1  GAATTCAAACTAGACAAATCCAAAACCAACATGCAAACTGTATTTCACGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAACTAGACAAATCCAAAACCAACATGCAAACTGTATTTCACGT  50

seq1  TTTTTGCCAAGAAAGTCATTGTTACCTTTAATAACTAGCATGTGCCTATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGCCAAGAAAGTCATTGTTACCTTTAATAACTAGCATGTGCCTATA  100

seq1  ACTATCCAGGCAGAAAGTATCCTAAAGGGAACACTTGTGTTCCCTTTGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATCCAGGCAGAAAGTATCCTAAAGGGAACACTTGTGTTCCCTTTGGT  150

seq1  TGTCAGACTATTAAAACAATGGGGCCCCCAAGGAACTGGAATTCCTCCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAGACTATTAAAACAATGGGGCCCCCAAGGAACTGGAATTCCTCCAA  200

seq1  GAAACTCATATAGAACCGTGAAAAAAGCAGAAGCCTAGTATCCCAGAGGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACTCATATAGAACCGTGAAAAAAGCAGAAGCCTAGTATCCCAGAGGC  250

seq1  GCCCTTCTCCTGGGAGACATTTTACACAGTTCTGACAACTTAGTAGACAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTTCTCCTGGGAGACATTTTACACAGTTCTGACAACTTAGTAGACAA  300

seq1  CCTTGTAAGAGATAGTCAATGATGGGGCAGGCTATTCCTTGACCAGGACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGTAAGAGATAGTCAATGATGGGGCAGGCTATTCCTTGACCAGGACT  350

seq1  GCTTAGTCATACATATATTTCTCTTGCCCTCTCTTTAAACACAAATCTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTAGTCATACATATATTTCTCTTGCCCTCTCTTTAAACACAAATCTTT  400

seq1  TTATCACACCACAAAGAGGGTCCTGTTGGAGGATGTCACCAGGCCTCTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCACACCACAAAGAGGGTCCTGTTGGAGGATGTCACCAGGCCTCTTT  450

seq1  GTTCCTCTTCCCGAATGTGTCCACATTGAATAAATCTTATCTTTCTGCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCTCTTCCCGAATGTGTCCACATTGAATAAATCTTATCTTTCTGCTT  500

seq1  TTCTTTATTACCTGTCTCTTTAATTAGTCTACCAAGAACAGGTGGACAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTATTACCTGTCTCTTTAATTAGTCTACCAAGAACAGGTGGACAGG  550

seq1  CCTGGCTTATTTTGTTAAAGCTCTGTGGAATGACTTGCAAGAACATGAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGCTTATTTTGTTAAAGCTCTGTGGAATGACTTGCAAGAACATGAGT  600

seq1  TTGACTCTAACTACAGATGATGGCATGGGATGATGTGTGCTTAAGACAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACTCTAACTACAGATGATGGCATGGGATGATGTGTGCTTAAGACAGG  650

seq1  CTTGCTGGGAAGTTCATATACTTTTGGAAAATTGACCAAAAAAAAAAAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCTGGGAAGTTCATATACTTTTGGAAAATTGACCAAAAAAAAAAAAA  700

seq1  AAAGCAATAAACAACAGCATGAGTATAATTAAAAATTAACACCACGAAGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCAATAAACAACAGCATGAGTATAATTAAAAATTAACACCACGAAGC  750

seq1  TTTGGTTGAGTAACTTCCAGAAGACAGACAGACAGACAGACAG------A  794
      |||||||||||||||||||||||||||||||||||||||||||      |
seq2  TTTGGTTGAGTAACTTCCAGAAGACAGACAGACAGACAGACAGACAGACA  800

seq1  CAGACACAGACACAGACACACACACACACACACACACACACACACACACA  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACACAGACACAGACACACACACACACACACACACACACACACACACA  850

seq1  CACACACACACAGAGCAACTATCCAGTTGTGGTAGCTCAGAAATGCCCCA  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACAGAGCAACTATCCAGTTGTGGTAGCTCAGAAATGCCCCA  900

seq1  GTATATCTGAAAGGATCAGGAGGTGAGGCAGGTTTGTTCT-ATAAGTGAG  943
      |||||||||||||||||| || |||||||| ||||||||| |||||||||
seq2  GTATATCTGAAAGGATCAAGA-GTGAGGCA-GTTTGTTCTAATAAGTGAG  948

seq1  CTCATTTATGACGTACCTCTTCTAACG-AGAAAACTTTGGGAAACTGGCC  992
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  CTCATTTATGACGTACCTCTTCTAACGAAGAAAACTTTGGGAAACTGGCC  998

seq1  ACCTTCAAGCAATTTCATTATTCAAATTATAACCAAACTCCTCTGCAGAT  1042
      |||||||||||||||||||| || |||||| ||||||||||||||| |||
seq2  ACCTTCAAGCAATTTCATTAATCCAATTAT-ACCAAACTCCTCTGC-GAT  1046

seq1  TGGAGGAATTTGGAGAGAATGAGGAAACTGGAACTTGAGATAGAAGCAGC  1092
        |||  ||||||| ||||||| |||||||  || |||||| ||||||||
seq2  --GAG--ATTTGGAAAGAATGA-GAAACTG--AC-TGAGATTGAAGCAGC  1088

seq1  AAGGAGCAGACTCACAAGACTGGAAACAGAGCCAAGTACCATCCAGAAAA  1142
       |||| | |||||   ||||| |||||  ||||||||| ||| |||||||
seq2  -AGGAAC-GACTC---AGACT-GAAACGAAGCCAAGTA-CAT-CAGAAAA  1130

seq1  A  1143
      |
seq2  A  1131


| Home | SequenceCutter | Blast | Download |