BAC Information

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BAC

Clone NameB6Ng01-258M23
Chromosome9 (Build37)19 (Build37)
Map Location 109,913,076 - 109,913,43838,313,319 - 38,314,406
singlet/doubletsingletsinglet
Overlap geneMtap4
Upstream genePfkfb4, Scotin, Trex1, 6620401K05Rik, Ccdc72, Ccdc51, EG665413, Plxnb1, E330009P21Rik, Fbxw13, Fbxw12, Fbxw14, LOC668758, EG382156, Fbxw16, Fbxw19, LOC635668, Fbxw15, EG382106, E330001B16Rik, C85627, EG382109, 1700124P09Rik, Spink8, 3000002C10Rik, Nme6, Camp, Cdc25a, LOC100043782, LOC100049540
Downstream geneDhx30, Smarcc1, Rn4.5s-ps2, Cspg5, Tmem103, Scap, Ptpn23, Ngp, Klhl18, Kif9, Setd2, Nradd, Nbeal2, Ccdc12, Pthr1, Myl3, 9430025E04Rik, LOC665549, Tessp2, 1700036D21Rik, Tessp3, BC107230, 1700112C13Rik, Tsp50, Tmie, Als2cl, Gm590, Tdgf1, Lrrc2, Rtp3, ENSMUSG00000057802
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-258M23.bB6Ng01-258M23.g
ACCGA064152GA064153
length1,0041,069
definitionB6Ng01-258M23.b B6Ng01-258M23.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(109,913,076 - 109,913,438)(38,313,319 - 38,314,406)
sequence
gaattctctggatatatcacaagagtggaatagccgagtcatgtggcatt
tctatttttaattttttggagaaacctccaaactgatttccataatgcct
gttttaatttgcatcccagctggccagaaataaaggttcctttttctctg
catccattccaatatttattgtcagagttcttgatgacagccatccccac
tgggggtgaggttatatctcaaagtaattttaattagcattcccctgatg
actagggatattttaagagtagttactggccatacatgtttcttttgtct
ttttagaaaaatgtctattccattcatttgctcatttgttgactgagttt
tacttccttatttaatttctgcaattctttgtaaattctaaatttttagc
ccttgtttgaaatatagctgataaagggttttctcccactctttggacca
tctgtgtgctagcctgatagttccctttactgagagatactctgtcagag
attactatgaaacatacactctaaaaaaataaatcaagaaaaatagaaga
tttctaaatgtatatcatctacaaaattaaaggcagaagatagaaataat
gtaaacaggccattataagcaatgaactagaagttgtaattaaaaccctc
ccctaagagaaaagaaaatgggaggcagaggcaggcagatttctgagctc
aaggccagcctggtctacaaagtgagttccaggtcagccaggactacaca
aagaaaccctgtctcgaaaaacaaaaaaacaaaaaacaaaaaaagagaaa
agtctaggaccagatgggttcattgctgagttttagcaaattttcaaagg
agacctcacaccaaagcttcttaaatgattccacaaaatagaaaattaag
gaacactaccaaatccatcttatgaagtcacactcatcctgataccagaa
ataatctacagatttaatgtgatgcttatcaaatgtggtgttatatttta
aaga
gaattcagtgggtgctggcaatgcctacttcagaacctccgccattggaa
tcagaacagaaccgagccatttaataggcacttaggagttctcccgctgc
cgcctctggagttctgttgaccacgatttacttacccacacaactcgctg
tgcaaaacgttaaatggaaaatcccagaaatgaataattgatgagttcta
aattgttcatcttggtgagcagtgtaataaaacctcagcctacctggctg
tcaggtcccaaagaaacttggggacaaatggttagctgagatgcctatta
gcaaaccaaagcacatgctggcctctaggctctctcagtaatgcaagtac
cagttacaggagtcctggctcttctcatctcttctcaccacacctctacc
ctaaacctctatagtccagcggcttggcttcccttccctgccagcttctc
ttttctatataaccctagtgtttcagcccctcttggttattctatctctc
ttgatttgtgcttggttctcttagtcctattatccccactcttttttctc
tctcaccaccccccccccccattcttctcttatggcctggttcaatctgg
aatcgtccagatgcctctggctgtactctccctcatatttgtaataaaac
gcttctcctcaaccataccttagggcaaagccatccttgtattattcact
ggctccatctgattgtctaaagtctccctccatccaatgtatgcacactg
tcaatgttacttgtctgtcagtcactgagtggacggagcactgaccccca
ttatcgaaggcaaagctgtaccagagtgtttatgtccaagcaaacgttgt
tttccttaaaagtctccaaagtgcaagagtatttgatgttggcagtccag
ctctgctcaagggaaagcagagaagttgttttctttaagcaaaaggtaaa
attcttactaagaaatgggagagtctgactcagtcagaagatccagagag
ctttgagacatgtcacattgtcagtcaaatttttgtcactaacaaagcaa
cattctagatttgtgaagc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_109913076_109913438
seq2: B6Ng01-258M23.b_547_842

seq1  AGATTACTATGGAACATTTTC-GTAAGGACAAATATAACTCCCGGGAAAA  49
      ||||||||||| |||||   |  |||    ||| |||| |  |  |||||
seq2  AGATTACTATGAAACATACACTCTAA----AAAAATAAAT--CAAGAAAA  44

seq1  TTAGA--AATTGAAATTGTGTAGAACTCACACATCTAGCTGGAGATGTCC  97
       ||||  | ||  || ||| ||         ||||||            |
seq2  ATAGAAGATTTCTAAATGTATA--------TCATCTA------------C  74

seq1  TAAACTAAACTCATTATCCCTCCCTTAACACACACACACACACACACACA  147
       ||| ||||  ||             || | | | | |         |  
seq2  AAAATTAAAGGCA------------GAAGATAGAAATA---------ATG  103

seq1  CACACACACACATACACACACATGCAAACAAAAAAATGCCTGCTCCCAAG  197
       | |||  |   || |  || |||  ||| | ||  ||  |  |   || 
seq2  TAAACAGGCCATTATAAGCA-ATG--AACTAGAAGTTG--TAATTAAAAC  148

seq1  CCAGGCGTGGTGGCGAACGCCTTTAATCCCAGAACTTGGGAGGCAGAGGC  247
      ||               | |||   |    ||||  ||||||||||||||
seq2  CC--------------TCCCCTAAGAGAAAAGAAAATGGGAGGCAGAGGC  184

seq1  AGGCGGATTTATGAGTTCGAGGCCAGCCTGGTCTACAAAGTGAGCTCCAG  297
      |||| ||||| |||| || ||||||||||||||||||||||||| |||||
seq2  AGGCAGATTTCTGAGCTCAAGGCCAGCCTGGTCTACAAAGTGAGTTCCAG  234

seq1  GACAGCCAGGGTTGTACAGAGAAACCCTGTCTCGAAAAACCAAAAAAAAA  347
      | ||||||||  |  ||| |||||||||||||||||||||    ||||||
seq2  GTCAGCCAGGACTACACAAAGAAACCCTGTCTCGAAAAAC----AAAAAA  280

seq1  ACAAAAAACAAAAAAA  363
      ||||||||||||||||
seq2  ACAAAAAACAAAAAAA  296

seq1: chr19_38313319_38314406
seq2: B6Ng01-258M23.g_66_1134

seq1  GAATTCAGTGGGTGCTGGCAATGCCTACTTCAGAACCTCCGCCATTGGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTGGGTGCTGGCAATGCCTACTTCAGAACCTCCGCCATTGGAA  50

seq1  TCAGAACAGAACCGAGCCATTTAATAGGCACTTAGGAGTTCTCCCGCTGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAACAGAACCGAGCCATTTAATAGGCACTTAGGAGTTCTCCCGCTGC  100

seq1  CGCCTCTGGAGTTCTGTTGACCACGATTTACTTACCCACACAACTCGCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCTCTGGAGTTCTGTTGACCACGATTTACTTACCCACACAACTCGCTG  150

seq1  TGCAAAACGTTAAATGGAAAATCCCAGAAATGAATAATTGATGAGTTCTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAAACGTTAAATGGAAAATCCCAGAAATGAATAATTGATGAGTTCTA  200

seq1  AATTGTTCATCTTGGTGAGCAGTGTAATAAAACCTCAGCCTACCTGGCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGTTCATCTTGGTGAGCAGTGTAATAAAACCTCAGCCTACCTGGCTG  250

seq1  TCAGGTCCCAAAGAAACTTGGGGACAAATGGTTAGCTGAGATGCCTATTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGTCCCAAAGAAACTTGGGGACAAATGGTTAGCTGAGATGCCTATTA  300

seq1  GCAAACCAAAGCACATGCTGGCCTCTAGGCTCTCTCAGTAATGCAAGTAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAACCAAAGCACATGCTGGCCTCTAGGCTCTCTCAGTAATGCAAGTAC  350

seq1  CAGTTACAGGAGTCCTGGCTCTTCTCATCTCTTCTCACCACACCTCTACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTACAGGAGTCCTGGCTCTTCTCATCTCTTCTCACCACACCTCTACC  400

seq1  CTAAACCTCTATAGTCCAGCGGCTTGGCTTCCCTTCCCTGCCAGCTTCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAACCTCTATAGTCCAGCGGCTTGGCTTCCCTTCCCTGCCAGCTTCTC  450

seq1  TTTTCTATATAACCCTAGTGTTTCAGCCCCTCTTGGTTATTCTATCTCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTATATAACCCTAGTGTTTCAGCCCCTCTTGGTTATTCTATCTCTC  500

seq1  TTGATTTGTGCTTGGTTCTCTTAGTCCTATTATCCCCACTCTTTTTTCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATTTGTGCTTGGTTCTCTTAGTCCTATTATCCCCACTCTTTTTTCTC  550

seq1  TCTCACCACCCCCCCCCCCCATTCTTCTCTTATGGCCTGGTTCAATCTGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCACCACCCCCCCCCCCCATTCTTCTCTTATGGCCTGGTTCAATCTGG  600

seq1  AATCGTCCAGATGCCTCTGGCTGTACTCTCCCTCATATTTGTAATAAAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCGTCCAGATGCCTCTGGCTGTACTCTCCCTCATATTTGTAATAAAAC  650

seq1  GCTTCTCCTCAACCATACCTTAGGGCAAAGCCATCCTTGTATTATTCACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTCCTCAACCATACCTTAGGGCAAAGCCATCCTTGTATTATTCACT  700

seq1  GGCTCCATCTGATTGTCTAAAGTCTCCCTCCATCCAATGTATGCACACTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCCATCTGATTGTCTAAAGTCTCCCTCCATCCAATGTATGCACACTG  750

seq1  TCAATGTTACTTGTCTGTCAGTCACTGAGTGGACGGAGCACTGACCCCCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATGTTACTTGTCTGTCAGTCACTGAGTGGACGGAGCACTGACCCCCA  800

seq1  TTATCGAAGGCAAAGCTGTACCAGAGTGTTTATGTCCAAGCAAACGTTGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCGAAGGCAAAGCTGTACCAGAGTGTTTATGTCCAAGCAAACGTTGT  850

seq1  TTTCCTTAAAAGTCTCCAAAGTGCAAGAGTA-TTGATGTTGGCAGTCCAG  899
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TTTCCTTAAAAGTCTCCAAAGTGCAAGAGTATTTGATGTTGGCAGTCCAG  900

seq1  CCCTGCCCAAGGG-AAGCAGAGAAGTTG-TTTCTTTAAGCAAAAAGGTAA  947
      | |||| |||||| |||||||||||||| ||||||||||| ||||||| |
seq2  CTCTGCTCAAGGGAAAGCAGAGAAGTTGTTTTCTTTAAGC-AAAAGGT-A  948

seq1  AAATTCTTACTAAGGAAAAGGGGGAGAGTCTGAACCTCAGGTCAGAAAGA  997
      ||||||||||||||   ||  ||||||||||||  |||| ||||| ||||
seq2  AAATTCTTACTAAG---AAATGGGAGAGTCTGA--CTCA-GTCAG-AAGA  991

seq1  TCCAGAAGAGCTTTTGAGACCATGTTCACATTGTCAGGTCCAAATTTTTG  1047
      ||||| ||||| ||||||| |||| ||||||||||||   ||||||||||
seq2  TCCAG-AGAGC-TTTGAGA-CATG-TCACATTGTCAG--TCAAATTTTTG  1035

seq1  TCACTAAACAAAAGCCAACATTCCTTAGGAATTTGTGAAGC  1088
      ||||| ||||||   ||||||||  |||  |||||||||||
seq2  TCACT-AACAAA--GCAACATTC--TAG--ATTTGTGAAGC  1069