BAC Information

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BAC

Clone NameB6Ng01-258N24
Chromosome9 (Build37)
Map Location 20,548,110 - 20,702,627
singlet/doubletdoublet
Overlap geneCol5a3, Rdh8, A230050P20Rik, Angptl6, Ppan, Eif3s4
Upstream geneOlfr58, Olfr859, Olfr860, GA_x5J8B7W6RL5-13004417-13003354, Olfr862, Olfr77, EG665823, Olfr863-ps1, Olfr864-ps1, Olfr865-ps1, Olfr866, Olfr867, Olfr868, Olfr869, Olfr870, Olfr871, Olfr872, Olfr39, Olfr873, Olfr18, Zfp560, 4921534A09Rik, EG624824, Zfp26, Zfp426, 5730601F06Rik, 7030419G21Rik, LOC100041205, 2210010B09Rik, 5730577I03Rik, Fbxl12, Ubl5, Pin1, Olfm2
Downstream geneDnmt1, Edg5, Mrpl4, Icam1, Icam4, Icam5, Glp1, B230118G17Rik, Raver1, Tyk2, Cdc37, Pde4a, Keap1, Edg8, Atg4d, BC021438, Cdkn2d, Ap1m2, Slc44a2, Ilf3, Qtrt1, Dnm2, Tmed1, AB124611, Carm1, Yipf2, 1810026J23Rik, EG666043, Smarca4, Ldlr, Spc24, Ankrd25, Dock6, EG624219
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-258N24.bB6Ng01-258N24.g
ACCGA064200GA064201
length980614
definitionB6Ng01-258N24.b B6Ng01-258N24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(20,701,650 - 20,702,627)(20,548,110 - 20,548,722)
sequence
gaattccctctggcagacaaatgtgtcaccagcgagctcctgaaaggaat
ccctctgcccaccggggacaccagtccagagcccgagttactgcccggag
gtgagcagtgtccatccctgcctgcttcctcttcccttccgactctcaag
cctactttccagccagtccccattacccgggaatcagtttctgtcatctt
cctccagacccgctgccacctcccaaggaagtcatcaatgggaacataaa
gacagtgactgagtacaagatagaggaagatgggaagaaattcaaggtga
ggtcgaagtggacacatagggccagtgcctttgtgttcaggggttcaggt
ggaggggtgtcagtggctgagacagggcctgaggctctggaagcactcct
ctcttattcatcttcagattgtcagaaccttcaggattgagacccggaag
gcatcaaaggctgtggcaaggaggaaggtgagattctacctcatttgggg
ggtagggtgttctctggggctgatcctgaggagttgggaagccccttttt
gttgatgtggagtaaacgtttagtgttaggccttgaaaggttagggccca
ggagtagatgaagttagatgctttatttattcatttacttttgttttttt
attgttctccttttgtgtgcggatgtgcgcagcatcatcccccccagcac
atggcacagcatactttttggtttgagctggtctctcggtattaggaact
agactaggcttgctgggcactaacagccccaggggaccctgctgtcccca
cttcctgtctggcctgcaccgggaatgcaagtttgcctctgtgcacagtg
tttgactgtgggtgctcggggtcagagtcctgacggacacttgtgtgaca
gacactgtactgagacatacccagcccctctgggttttattgttggtagt
ttgtttttccagacagggtttctcgtgtag
gaattcctgatcccatccctccacacacacacacacaccctgggttacag
gtgtgggccaccatgactagcttctacttgtgatttttttcttcctattt
gcacaggattatatatggattcagctcttggagccggtgtattcattttt
gtggtttcatctgtctgctgcacctgaaggtcagctccaggagggctggg
cctcactgcttcatcaaatctggtgatgtgaacggctgaggaaatgattt
ctcaagaagggttctgttcagggttctgttgggactgcggagaggtgtct
gggactagacagagaaatgagaggggcagagccgctttcctcagaacccc
gcccctctctcttctcctccctgtcctcttttgccctcctcctctccttc
cccctgtggaggcagaccttggttaaccactatttttttttcagccatca
cgtggtgccccctagtggccacctgaatcagtgcagccagtgactgctgc
cccccaagagtcgggattcagatgtccccgcttcagccccagcacgtctc
tggcaggtggtccttcccttgctctccaagtagctccatccccaatcggc
cccgccccaagctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_20701650_20702627
seq2: B6Ng01-258N24.b_49_1028 (reverse)

seq1  CTACACAGAGAAACCCTGTCTGGAAAAACAAACTACAAACAATAAAACCC  50
      |||||| ||||||||||||||||||||||||||||| |||||||||||||
seq2  CTACAC-GAGAAACCCTGTCTGGAAAAACAAACTACCAACAATAAAACCC  49

seq1  AAGAGGGCTGGGTATGTCTCAGTACAGTGTCTGTCACACAAGTGTCCGTC  100
      |   ||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGGGCTGGGTATGTCTCAGTACAGTGTCTGTCACACAAGTGTCCGTC  99

seq1  A-GACTCTGACCCCGAGCACCCACAGTCAAACACTGTGCACAGAGGCAAA  149
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACTCTGACCCCGAGCACCCACAGTCAAACACTGTGCACAGAGGCAAA  149

seq1  CTTGCATTCCCGGTGCAGGCCAGACAGGAAGTGGGGACAGCAGGGT-CCC  198
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  CTTGCATTCCCGGTGCAGGCCAGACAGGAAGTGGGGACAGCAGGGTCCCC  199

seq1  TGGGGCTGTTAGTGCCCAGCAAGCCTAGTCTAGTTCCTAATACCGAGAGA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGCTGTTAGTGCCCAGCAAGCCTAGTCTAGTTCCTAATACCGAGAGA  249

seq1  CCAGCTCAAACC-AAAAGTATGCTGTGCCATGTGCTGGGGGGGATGATGC  297
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  CCAGCTCAAACCAAAAAGTATGCTGTGCCATGTGCTGGGGGGGATGATGC  299

seq1  TGCGCACATCCGCACACAAAAGGAGAACAATAAAAAAACAAAAGTAAATG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGCACATCCGCACACAAAAGGAGAACAATAAAAAAACAAAAGTAAATG  349

seq1  AATAAATAAAGCATCTAACTTCATCTACTCCTGGGCCCTAACCTTTCAAG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAATAAAGCATCTAACTTCATCTACTCCTGGGCCCTAACCTTTCAAG  399

seq1  GCCTAACACTAAACGTTTACTCCACATCAACAAAAAGGGGCTTCCCAACT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTAACACTAAACGTTTACTCCACATCAACAAAAAGGGGCTTCCCAACT  449

seq1  CCTCAGGATCAGCCCCAGAGAACACCCTACCCCCCAAATGAGGTAGAATC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAGGATCAGCCCCAGAGAACACCCTACCCCCCAAATGAGGTAGAATC  499

seq1  TCACCTTCCTCCTTGCCACAGCCTTTGATGCCTTCCGGGTCTCAATCCTG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCTTCCTCCTTGCCACAGCCTTTGATGCCTTCCGGGTCTCAATCCTG  549

seq1  AAGGTTCTGACAATCTGAAGATGAATAAGAGAGGAGTGCTTCCAGAGCCT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTTCTGACAATCTGAAGATGAATAAGAGAGGAGTGCTTCCAGAGCCT  599

seq1  CAGGCCCTGTCTCAGCCACTGACACCCCTCCACCTGAACCCCTGAACACA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCCCTGTCTCAGCCACTGACACCCCTCCACCTGAACCCCTGAACACA  649

seq1  AAGGCACTGGCCCTATGTGTCCACTTCGACCTCACCTTGAATTTCTTCCC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCACTGGCCCTATGTGTCCACTTCGACCTCACCTTGAATTTCTTCCC  699

seq1  ATCTTCCTCTATCTTGTACTCAGTCACTGTCTTTATGTTCCCATTGATGA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTCCTCTATCTTGTACTCAGTCACTGTCTTTATGTTCCCATTGATGA  749

seq1  CTTCCTTGGGAGGTGGCAGCGGGTCTGGAGGAAGATGACAGAAACTGATT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTTGGGAGGTGGCAGCGGGTCTGGAGGAAGATGACAGAAACTGATT  799

seq1  CCCGGGTAATGGGGACTGGCTGGAAAGTAGGCTTGAGAGTCGGAAGGGAA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGGGTAATGGGGACTGGCTGGAAAGTAGGCTTGAGAGTCGGAAGGGAA  849

seq1  GAGGAAGCAGGCAGGGATGGACACTGCTCACCTCCGGGCAGTAACTCGGG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAAGCAGGCAGGGATGGACACTGCTCACCTCCGGGCAGTAACTCGGG  899

seq1  CTCTGGACTGGTGTCCCCGGTGGGCAGAGGGATTCCTTTCAGGAGCTCGC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGACTGGTGTCCCCGGTGGGCAGAGGGATTCCTTTCAGGAGCTCGC  949

seq1  TGGTGACACATTTGTCTGCCAGAGGGAATTC  978
      |||||||||||||||||||||||||||||||
seq2  TGGTGACACATTTGTCTGCCAGAGGGAATTC  980

seq1: chr9_20548110_20548722
seq2: B6Ng01-258N24.g_70_683

seq1  GAATTCCTGATCCCATCCCTCCACACACACACACACACCCTGGGTTACAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGATCCCATCCCTCCACACACACACACACACCCTGGGTTACAG  50

seq1  GTGTGGGCCACCATGACTAGCTTCTACTTGTGATTTTTTTCTTCCTATTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGGGCCACCATGACTAGCTTCTACTTGTGATTTTTTTCTTCCTATTT  100

seq1  GCACAGGATTATATATGGATTCAGCTCTTGGAGCCGGTGTATTCATTTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAGGATTATATATGGATTCAGCTCTTGGAGCCGGTGTATTCATTTTT  150

seq1  GTGGTTTCATCTGTCTGCTGCACCTGAAGGTCAGCTCCAGGAGGGCTGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTTTCATCTGTCTGCTGCACCTGAAGGTCAGCTCCAGGAGGGCTGGG  200

seq1  CCTCACTGCTTCATCAAATCTGGTGATGTGAACGGCTGAGGAAATGATTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCACTGCTTCATCAAATCTGGTGATGTGAACGGCTGAGGAAATGATTT  250

seq1  CTCAAGAAGGGTTCTGTTCAGGGTTCTGTTGGGACTGCGGAGAGGTGTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAGAAGGGTTCTGTTCAGGGTTCTGTTGGGACTGCGGAGAGGTGTCT  300

seq1  GGGACTAGACAGAGAAATGAGAGGGGCAGAGCCGCTTTCCTCAGAACCCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACTAGACAGAGAAATGAGAGGGGCAGAGCCGCTTTCCTCAGAACCCC  350

seq1  GCCCCTCTCTCTTCTCCTCCCTGTCCTCTTTTGCCCTCCTCCTCTCCTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCTCTCTCTTCTCCTCCCTGTCCTCTTTTGCCCTCCTCCTCTCCTTC  400

seq1  CCCCTGTGGAGGCAGACCTTGGTTAACCACTATTTTTTTTTCAGCCATCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTGTGGAGGCAGACCTTGGTTAACCACTATTTTTTTTTCAGCCATCA  450

seq1  CGTGGTGCCCCCTAGTGGCCACCTGAAGCAGTGCAGCCAGTGACTGCTGC  500
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  CGTGGTGCCCCCTAGTGGCCACCTGAATCAGTGCAGCCAGTGACTGCTGC  500

seq1  CCCCCAAGAGTCGGGATTCAGATGTCCCCGCTTCAGCCCCAGCACG-CTC  549
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  CCCCCAAGAGTCGGGATTCAGATGTCCCCGCTTCAGCCCCAGCACGTCTC  550

seq1  TGGCAGGTGGTCCTTCCCTTGCTCTCCAAGTAGCTCCATCCCCAATCGGC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAGGTGGTCCTTCCCTTGCTCTCCAAGTAGCTCCATCCCCAATCGGC  600

seq1  CCCGCCCCAAGCCC  613
      |||||||||||| |
seq2  CCCGCCCCAAGCTC  614