BAC Information

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BAC

Clone NameB6Ng01-259C13
Chromosome9 (Build37)
Map Location 5,245,167 - 5,436,015
singlet/doubletdoublet
Overlap geneCasp1, Casp4, Casp12
Upstream geneLOC100039253, Aasdhppt, Kbtbd3, LOC664860, 8430410K20Rik, Gria4, EG664889
Downstream geneLOC547033, LOC100039361, LOC100039372, LOC664957, LOC676037, Pdgfd, Ddi1, EG664919
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-259C13.bB6Ng01-259C13.g
ACCGA064414GA064415
length8801,185
definitionB6Ng01-259C13.b B6Ng01-259C13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(5,245,167 - 5,246,045)(5,434,815 - 5,436,015)
sequence
gaattctcttctggggcatgaaaagaggtgtattatcccagttaataatt
tgtcacattaacaaatatttacttaagaaagcattgataaatttgtttca
caaattatatgcctgcatccacaattcctgctgttcttgatgcataaatg
tatgtatgtgtgtgcgcgcatgctaacgcacgcacgcacatgtgcatgtg
aaagataactaggccactgaatactgcacaactcaagtctacatctttca
ataagattttaacacaactagataaaaactaggttggaattttaaaatcc
aagttcccacatttatctttttaagtttaaatgttattcatgccacaaat
taaatagctttcaggtttttcatttaagtttataccctagtttaattctc
ctgtgattctgggcagtggtggcacatgcctttaatcccagcacttggga
ggcaaaaataggcagatttctgagttcaaggccagcctggcctacagagt
gagttccaggacagccacagagaaaccctgtcttgaaaaaccaaaaaaaa
aaaaaaaaaaaaaaaaaaaaaaacccaaaaaacaaaaacctcctgagata
actgtaacccatggatttaccatggtatactagaaaatcatcttttggtg
tgccttttgtgtacatacatattaaaattgaatattgtttatttcttcaa
aaaatttccaattaagctttctcctaagaggcaaattaacttattagaca
atagtcatagaatcttgccacttgatgtctttgtattgttggccactgct
tttcacctcacttcatcctatagtataatctccctttctgtgaacatcct
tatcaggcaattgaattctaaaattactgc
gaattcttgttgtctagcgtttccctgtaatctcaaagatcttacatcta
tggaaattttgtgtacatgttccttgttaagcatcatgggtggtaaatgg
gagataagatttgtgagacacaatatttcctatcatcatcagaaaagaag
agcacaaatacatcaaaaactctgggaaagttttcatatgcagtcatgac
tgcttaatgacaatgatgtgttctgagaaattcattatttgataatgtca
ttgtgtaaccattaaggaaggtataaatgtacacctacatgatagggcag
tgcatgtagtcaatactgaatagtaaatgtctgaggccagcacccatctt
ccagcatgatgcaacattctggttcatagccaaatacatttatagtgggt
gagaataaacaccaaaacaatattaaaatgtatatatggtaaatacataa
accatcaacagttatttataatccttatgacatattagatattgaatata
actgcatgtactgcacttttagaggctggtaagaaagtagtctggttcat
acaagtatcctttcaagcatctgagtaatgaattgtattatgctgtcagt
ctagtctagacatagatacttctcaactgctttctggggtagtataatca
gtcatatataagtataatcattaacatcagttgttaatttgtcacagcta
ggaagagggatcatcaattaaggaattgcccgacagaatgcctataggac
attatctcaattgcaaaataatgaagacaggaccagcctactggatgtca
tgtgaatcctggggagtttttcttgggtaatataagaaaagaagctgagc
aaatcagtaaggaacatcttttcatggtctctgtttaagtttatgtctct
aggttcttgcattagcttttcttaataaatgcttatgctataagccaaat
aaacactttctccccacctgctttttgtcagattgtgtagccagaaacca
gactagaaagcaaattctttcacaaatgaataatgctacgtgaacccact
attataatcttctagtcattttatattcttacatatgcaggagaatagca
acaagaacaaaactaatggacattataactcagtttttctcagctatgtt
tcacgtacttttgtcgctggaataaattatattta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_5245167_5246045
seq2: B6Ng01-259C13.b_44_923

seq1  GAATTCTCTTCTGGGGCATGAAAAGAGGTGTATTATCCCAGTTAATAATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTTCTGGGGCATGAAAAGAGGTGTATTATCCCAGTTAATAATT  50

seq1  TGTCACATTAACAAATATTTACTTAAGAAAGCATTGATAAATTTGTTTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCACATTAACAAATATTTACTTAAGAAAGCATTGATAAATTTGTTTCA  100

seq1  CAAATTATATGCCTGCATCCACAATTCCTGCTGTTCTTGATGCATAAATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATTATATGCCTGCATCCACAATTCCTGCTGTTCTTGATGCATAAATG  150

seq1  TATGTATGTGTGTGCGCGCATGCTAACGCACGCACGCACATGTGCATGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTATGTGTGTGCGCGCATGCTAACGCACGCACGCACATGTGCATGTG  200

seq1  AAAGATAACTAGGCCACTGAATACTGCACAACTCAAGTCTACATCTTTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATAACTAGGCCACTGAATACTGCACAACTCAAGTCTACATCTTTCA  250

seq1  ATAAGATTTTAACACAACTAGATAAAAACTAGGTTGGAATTTTAAAATCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGATTTTAACACAACTAGATAAAAACTAGGTTGGAATTTTAAAATCC  300

seq1  AAGTTCCCACATTTATCTTTTTAAGTTTAAATGTTATTCATGCCACAAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTCCCACATTTATCTTTTTAAGTTTAAATGTTATTCATGCCACAAAT  350

seq1  TAAATAGCTTTCAGGTTTTTCATTTAAGTTTATACCCTAGTTTAATTCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAGCTTTCAGGTTTTTCATTTAAGTTTATACCCTAGTTTAATTCTC  400

seq1  CTGTGATTCTGGGCAGTGGTGGCACATGCCTTTAATCCCAGCACTTGGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGATTCTGGGCAGTGGTGGCACATGCCTTTAATCCCAGCACTTGGGA  450

seq1  GGCAAAAATAGGCAGATTTCTGAGTTCAAGGCCAGCCTGGCCTACAGAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAAAATAGGCAGATTTCTGAGTTCAAGGCCAGCCTGGCCTACAGAGT  500

seq1  GAGTTCCAGGACAGCCACAGAGAAACCCTGTCTTGAAAAACCAAAAAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTCCAGGACAGCCACAGAGAAACCCTGTCTTGAAAAACCAAAAAAAA  550

seq1  AAAAAAAAAAAAAAAAAAAAAAACCCAAAAAACAAAAACCTCCTGAGATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAAAAAAAAAAAAACCCAAAAAACAAAAACCTCCTGAGATA  600

seq1  ACTGTAACCCATGGATTTACCATGGTATACTAGAAAATCATCTTTTGGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTAACCCATGGATTTACCATGGTATACTAGAAAATCATCTTTTGGTG  650

seq1  TGCCTTTTGTGTACATACATATTAAAATTGAATATTGTTTATTTCTTCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TGCCTTTTGTGTACATACATATTAAAATTGAATATTGTTTATTTCTTCAA  700

seq1  AAAATTTCCAATTAAGCTTTCTCCTAAGAGGCAAATTAACTTATTAGACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTTCCAATTAAGCTTTCTCCTAAGAGGCAAATTAACTTATTAGACA  750

seq1  ATAGTCATAGAATCTTGCCTCTTGATGTCTTTGTATTGTTGGCC-CTGCT  799
      ||||||||||||||||||| |||||||||||||||||||||||| |||||
seq2  ATAGTCATAGAATCTTGCCACTTGATGTCTTTGTATTGTTGGCCACTGCT  800

seq1  TTTCACCTCACTTCATCCTATAGTATAGTCTTCC-TTCTGTTGAAACATC  848
      ||||||||||||||||||||||||||| ||| || ||||||   ||||||
seq2  TTTCACCTCACTTCATCCTATAGTATAATCTCCCTTTCTGT--GAACATC  848

seq1  CTTATCAGGCAAAATGATTCTAAAA-TACTGC  879
      ||||||||||||    ||||||||| ||||||
seq2  CTTATCAGGCAATTGAATTCTAAAATTACTGC  880

seq1: chr9_5434815_5436015
seq2: B6Ng01-259C13.g_68_1252 (reverse)

seq1  TAAAT-TAATTTATTCCAGC-AAAAAAATAAGTGAAACATAGCTGAGAAA  48
      ||||| |||||||||||||| | |||| || ||||||||||||||||  |
seq2  TAAATATAATTTATTCCAGCGACAAAAGTACGTGAAACATAGCTGAG--A  48

seq1  AAAACTGGAGTTATAAATGTCCCATTAGTTTTGTTTCTTTGTATGCTATT  98
      |||||| ||||||| ||||| ||||||||||||||   |||| |||||||
seq2  AAAACT-GAGTTAT-AATGT-CCATTAGTTTTGTT--CTTGT-TGCTATT  92

seq1  CTCCTTGGCATAATGTAAGAATATAAAAATGACCTAGAAAGAATAT-ATA  147
      |||||  |||| |||||||||||| ||||||| |||| |||| ||| |||
seq2  CTCCT--GCAT-ATGTAAGAATAT-AAAATGA-CTAG-AAGATTATAATA  136

seq1  GTTGGGTTCCACGTAGCATTA-TCATTTGTGAAGGAATTTGCTTTCCTAG  196
      | |||||| |||||||||||| ||||||||||| ||||||||||| ||||
seq2  G-TGGGTT-CACGTAGCATTATTCATTTGTGAAAGAATTTGCTTT-CTAG  183

seq1  TCTGGTTTCTGGGCTACAACATCCTGACAAAAAGCAGGTGGGGAAGAAAG  246
      |||||||||| |||||| |||  |||||||||||||||||||| ||||||
seq2  TCTGGTTTCT-GGCTAC-ACAATCTGACAAAAAGCAGGTGGGG-AGAAAG  230

seq1  TGTTTATTTGGCTTATAGCATAAGCATTTATTAAGAAAAGCTAATGCAAG  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTATTTGGCTTATAGCATAAGCATTTATTAAGAAAAGCTAATGCAAG  280

seq1  AACCTAGAGACATAAACTTAAACAGAGACCATGAAAAGATGTTCCTTACT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTAGAGACATAAACTTAAACAGAGACCATGAAAAGATGTTCCTTACT  330

seq1  GATTTGCTCAGCTTCTTTTCTTATATTACCCAAGAAAAACTCCCCAGGAT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTGCTCAGCTTCTTTTCTTATATTACCCAAGAAAAACTCCCCAGGAT  380

seq1  TCACATGACATCCAGTAGGCTGGTCCTGTCTTCATTATTTTGCAATTGAG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACATGACATCCAGTAGGCTGGTCCTGTCTTCATTATTTTGCAATTGAG  430

seq1  ATAATGTCCTATAGGCATTCTGTCGGGCAATTCCTTAATTGATGATCCCT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATGTCCTATAGGCATTCTGTCGGGCAATTCCTTAATTGATGATCCCT  480

seq1  CTTCCTAGCTGTGACAAATTAACAACTGATGTTAATGATTATACTTATAT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTAGCTGTGACAAATTAACAACTGATGTTAATGATTATACTTATAT  530

seq1  ATGACTGATTATACTACCCCAGAAAGCAGTTGAGAAGTATCTATGTCTAG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACTGATTATACTACCCCAGAAAGCAGTTGAGAAGTATCTATGTCTAG  580

seq1  ACTAGACTGACAGCATAATACAATTCATTACTCAGATGCTTGAAAGGATA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGACTGACAGCATAATACAATTCATTACTCAGATGCTTGAAAGGATA  630

seq1  CTTGTATGAACCAGACTACTTTCTTACCAGCCTCTAAAAGTGCAGTACAT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTATGAACCAGACTACTTTCTTACCAGCCTCTAAAAGTGCAGTACAT  680

seq1  GCAGTTATATTCAATATCTAATATGTCATAAGGATTATAAATAACTGTTG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTTATATTCAATATCTAATATGTCATAAGGATTATAAATAACTGTTG  730

seq1  ATGGTTTATGTATTTACCATATATACATTTTAATATTGTTTTGGTGTTTA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTTTATGTATTTACCATATATACATTTTAATATTGTTTTGGTGTTTA  780

seq1  TTCTCACCCACTATAAATGTATTTGGCTATGAACCAGAATGTTGCATCAT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCACCCACTATAAATGTATTTGGCTATGAACCAGAATGTTGCATCAT  830

seq1  GCTGGAAGATGGGTGCTGGCCTCAGACATTTACTATTCAGTATTGACTAC  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGAAGATGGGTGCTGGCCTCAGACATTTACTATTCAGTATTGACTAC  880

seq1  ATGCACTGCCCTATCATGTAGGTGTACATTTATACCTTCCTTAATGGTTA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCACTGCCCTATCATGTAGGTGTACATTTATACCTTCCTTAATGGTTA  930

seq1  CACAATGACATTATCAAATAATGAATTTCTCAGAACACATCATTGTCATT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAATGACATTATCAAATAATGAATTTCTCAGAACACATCATTGTCATT  980

seq1  AAGCAGTCATGACTGCATATGAAAACTTTCCCAGAGTTTTTGATGTATTT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGTCATGACTGCATATGAAAACTTTCCCAGAGTTTTTGATGTATTT  1030

seq1  GTGCTCTTCTTTTCTGATGATGATAGGAAATATTGTGTCTCACAAATCTT  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTCTTCTTTTCTGATGATGATAGGAAATATTGTGTCTCACAAATCTT  1080

seq1  ATCTCCCATTTACCACCCATGATGCTTAACAAGGAACATGTACACAAAAT  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCCCATTTACCACCCATGATGCTTAACAAGGAACATGTACACAAAAT  1130

seq1  TTCCATAGATGTAAGATCTTTGAGATTACAGGGAAACGCTAGACAACAAG  1196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCATAGATGTAAGATCTTTGAGATTACAGGGAAACGCTAGACAACAAG  1180

seq1  AATTC  1201
      |||||
seq2  AATTC  1185