BAC Information

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BAC

Clone NameB6Ng01-259I24
Chromosome9 (Build37)
Map Location 21,784,720 - 21,939,255
singlet/doubletdoublet
Overlap geneRgl3, C330001K17Rik, Prkcsh, Elavl3, Zfp653, Ecsit, EG625409, Cnn1, Elof1, Acp5
Upstream geneMrpl4, Icam1, Icam4, Icam5, Glp1, B230118G17Rik, Raver1, Tyk2, Cdc37, Pde4a, Keap1, Edg8, Atg4d, BC021438, Cdkn2d, Ap1m2, Slc44a2, Ilf3, Qtrt1, Dnm2, Tmed1, AB124611, Carm1, Yipf2, 1810026J23Rik, EG666043, Smarca4, Ldlr, Spc24, Ankrd25, Dock6, EG624219, Rab3d, BC010787, 2510048L02Rik, BC018242, 2310047B19Rik, Epor
Downstream genePigyl, LOC100034724, 9530015I07Rik, 1810064F22Rik, Zfp809, BC050092, Zfp810, LOC100041826, EG625603, Anln, 9530077C05Rik, rp9, LOC100041870, Bbs9, LOC100040805
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-259I24.bB6Ng01-259I24.g
ACCGA064711GA064712
length363368
definitionB6Ng01-259I24.b B6Ng01-259I24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(21,784,720 - 21,785,082)(21,938,882 - 21,939,255)
sequence
cacatctgccagccagcttttaccaactgagcccctctccccatctccat
actcttgggatatttgagacagtctcacatagttccacactagtcttgtt
atatcaccctggctagcttgctgtgtagactaggctgacctcgaattcac
agtgatcctcctgcctcagcctcccaagtggtgttgttacaaatatgaat
cccttgaattcgggggttcctaatacctgggaaagaatcgctcggctgct
gagatggttatcctcatcagaaaaaatctgtgacagtttcctgaaaacag
acagcggttccctgtaggggtgagaggggcacagtcaggctcagcggggg
tgggagtggggag
ccaccatactcaggctccaccgctggctctttggtctcctcagactccaa
cctgtttgtttgtttgtttatgcagcctctggctctgaggctgaagttca
tggtcctctgacttctgccttcccagtgctgggatcccaggcgtggccac
cttgcccggctgtgtctgcgcccatttgcttaacttcatcagcgtgtgta
tggcatatgtaggtatgtgtgtacaggacttggaggcccggtccatctgt
ccttccctcatctttgtcaacaagcacttttacacactgagccctctcac
catacctagctcatcagtgccagctatgcagttcagggagaggcacacag
gaagtgggggggggggag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_21784720_21785082
seq2: B6Ng01-259I24.b_52_414

seq1  CACATCTGCCAGCCAGCTTTTACCAACTGAGCCCCTCTCCCCATCTCCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATCTGCCAGCCAGCTTTTACCAACTGAGCCCCTCTCCCCATCTCCAT  50

seq1  ACTCTTGGGATATTTGAGACAGTCTCACATAGTTCCACACTAGTCTTGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTTGGGATATTTGAGACAGTCTCACATAGTTCCACACTAGTCTTGTT  100

seq1  ATATCACCCTGGCTAGCTTGCTGTGTAGACTAGGCTGACCTCGAATTCAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCACCCTGGCTAGCTTGCTGTGTAGACTAGGCTGACCTCGAATTCAC  150

seq1  AGTGATCCTCCTGCCTCAGCCTCCCAAGTGGTGTTGTTACAAATATGAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGATCCTCCTGCCTCAGCCTCCCAAGTGGTGTTGTTACAAATATGAAT  200

seq1  CCCTTGAATTCGGGGGTTCCTAATACCTGGGAAAGAATCGCTCGGCTGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTGAATTCGGGGGTTCCTAATACCTGGGAAAGAATCGCTCGGCTGCT  250

seq1  GAGATGGTTATCCTCATCAGAAAAAATCTGTGACAGTTTCCTGAAAACAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATGGTTATCCTCATCAGAAAAAATCTGTGACAGTTTCCTGAAAACAG  300

seq1  ACAGCGGTTCCCTGTAGGGGTGAGAGGGGCACAGTCAGGCTCAGCGGGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCGGTTCCCTGTAGGGGTGAGAGGGGCACAGTCAGGCTCAGCGGGGG  350

seq1  TGGGAGTGGGGAG  363
      |||||||||||||
seq2  TGGGAGTGGGGAG  363

seq1: chr9_21938882_21939255
seq2: B6Ng01-259I24.g_70_443 (reverse)

seq1  CTCCCCCCCCCCCACTTCCTGTGTGCCTCTCCCTGAACTGCATAGCTGGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCCCCCCCCCACTTCCTGTGTGCCTCTCCCTGAACTGCATAGCTGGC  50

seq1  ACTGATGAGCTAGGTATGGTGAGAGGGCTCAGTGTGTAAAAGTGCTTGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGATGAGCTAGGTATGGTGAGAGGGCTCAGTGTGTAAAAGTGCTTGTT  100

seq1  GACAAAGATGAGGGAAGGACAGATGGACCGGGCCTCCAAGTCCTGTACAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAAGATGAGGGAAGGACAGATGGACCGGGCCTCCAAGTCCTGTACAC  150

seq1  ACATACCTACATATGCCATACACACGCTGATGAAGTTAAGCAAATGGGCG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATACCTACATATGCCATACACACGCTGATGAAGTTAAGCAAATGGGCG  200

seq1  CAGACACAGCCGGGCAAGGTGGCCACGCCTGGGATCCCAGCACTGGGAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACACAGCCGGGCAAGGTGGCCACGCCTGGGATCCCAGCACTGGGAAG  250

seq1  GCAGAAGTCAGAGGACCATGAACTTCAGCCTCAGAGCCAGAGGCTGCATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAAGTCAGAGGACCATGAACTTCAGCCTCAGAGCCAGAGGCTGCATA  300

seq1  AACAAACAAACAAACAGGTTGGAGTCTGAGGAGACCAAAGAGCCAGCGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAACAAACAAACAGGTTGGAGTCTGAGGAGACCAAAGAGCCAGCGGT  350

seq1  GGAGCCTGAGTATGGTGGGAATTC  374
      ||||||||||||||||||||||||
seq2  GGAGCCTGAGTATGGTGGGAATTC  374