BAC Information

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BAC

Clone NameB6Ng01-259L23
Chromosome9 (Build37)
Map Location 30,442,981 - 30,573,434
singlet/doubletdoublet
Overlap genenone
Upstream geneHnt, Snx19, LOC666478
Downstream geneAdamts15, Adamts8, Zbtb44, BC038156, St14, Aplp2, EG638580, EG666539, Prdm10, Nfrkb, Tmem45b, LOC666558, EG666576
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-259L23.bB6Ng01-259L23.g
ACCGA064851GA064852
length3631,107
definitionB6Ng01-259L23.b B6Ng01-259L23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(30,573,072 - 30,573,434)(30,442,981 - 30,444,092)
sequence
catcgctttaatgaagtccattcccttagactcctggggtttatcctgga
gatgtagatgtgatttgcttctcacagtcccctttgaagatggttttctg
ttgaataaatctttgaggatattgttcctagctcaaggtctgacaaatgg
tagaactggcaggtatttgttctgtggatgaaagagtgatgctgcagaga
cacaaaggaacctagaattaagggaaagttccctgaccttgggtagcctt
tgtgcagtctgggagctctttctctgtgcaggtcctatatcaggtatgcc
agatgagctcaggcctccagagatggttcagtatagcggcagggggctgg
ggggtggggagag
gaattcagtgatcttttctagttgtctgttatttctttagaaatatcagg
gctccttcccatccaggaaattttggctttcggaagtactcaaaattgaa
gtaagaagttaatccaaggagaaaatgatggcctttctgaagggcgtggg
taatggctacaagaacagtgatggctagaaatcctagttccaattgagcc
aaaggaaaaggacatcatcgggaggttctgatccagctaacacagtcatc
gctggagctcctaggatctcacaagtaggcatgtcacaagcattctctca
tttgattctaatgacaattgtctgaagcagttattgttgttgttaatatt
atttacagaaaaaaaaaagctaagcaatttgcctagtgttgctcagctag
cacctgacaggattaggatactaagtaggtttgagtggctgacccaagct
atgcaaatgacatcagtctacaatccttgttcccagggtgtggtggaaag
tgctgactgtcctcccatacctcttctcctctgatttctctttttattac
acataaaagttagctggacatgtttagctcacaataaacatatagccaga
tacccaaaaatcgattcatggaatatgagttgaagcaaagtgttatattt
ctagttaagtgttcttaaagagaaaattgggtctttctatctttccttct
atttttactagctggctagtatgcagatctgatatcacacacacacatac
acacacacaaataagtcaacatcatggaattaaaagagaaatatactgat
ggtggcagaagtgccctataggaatgttttcactggtgggttacaatgct
gtcctcataaccttggtcttccaccccaacatttcaatgagagatacaga
aaaactcaaataccgttctaggaaaggtttctgttgtttcctctgggtaa
aatcctatctactgcacaagacacatagactctctaccgcatctctcctg
ctatcatcatgcctttgtgcttttctacttttcctcatacagtttcaccc
aaatcgatcgtttgtacacgtttcagatttaattattagattccaacatc
cgggggc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_30573072_30573434
seq2: B6Ng01-259L23.b_51_413 (reverse)

seq1  CTCTCCCCACCCCCCAGCCCCCTGCCGCTATACTGAACCATCTCTGGAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCCCACCCCCCAGCCCCCTGCCGCTATACTGAACCATCTCTGGAGG  50

seq1  CCTGAGCTCATCTGGCATACCTGATATAGGACCTGCACAGAGAAAGAGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAGCTCATCTGGCATACCTGATATAGGACCTGCACAGAGAAAGAGCT  100

seq1  CCCAGACTGCACAAAGGCTACCCAAGGTCAGGGAACTTTCCCTTAATTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGACTGCACAAAGGCTACCCAAGGTCAGGGAACTTTCCCTTAATTCT  150

seq1  AGGTTCCTTTGTGTCTCTGCAGCATCACTCTTTCATCCACAGAACAAATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTCCTTTGTGTCTCTGCAGCATCACTCTTTCATCCACAGAACAAATA  200

seq1  CCTGCCAGTTCTACCATTTGTCAGACCTTGAGCTAGGAACAATATCCTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCCAGTTCTACCATTTGTCAGACCTTGAGCTAGGAACAATATCCTCA  250

seq1  AAGATTTATTCAACAGAAAACCATCTTCAAAGGGGACTGTGAGAAGCAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATTTATTCAACAGAAAACCATCTTCAAAGGGGACTGTGAGAAGCAAA  300

seq1  TCACATCTACATCTCCAGGATAAACCCCAGGAGTCTAAGGGAATGGACTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACATCTACATCTCCAGGATAAACCCCAGGAGTCTAAGGGAATGGACTT  350

seq1  CATTAAAGCGATG  363
      |||||||||||||
seq2  CATTAAAGCGATG  363

seq1: chr9_30442981_30444092
seq2: B6Ng01-259L23.g_67_1173

seq1  GAATTCAGTGATCTTTTCTAGTTGTCTGTTATTTCTTTAGAAATATCAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTGATCTTTTCTAGTTGTCTGTTATTTCTTTAGAAATATCAGG  50

seq1  GCTCCTTCCCATCCAGGAAATTTTGGCTTTCGGAAGTACTCAAAATTGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCTTCCCATCCAGGAAATTTTGGCTTTCGGAAGTACTCAAAATTGAA  100

seq1  GTAAGAAGTTAATCCAAGGAGAAAATGATGGCCTTTCTGAAGGGCGTGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGAAGTTAATCCAAGGAGAAAATGATGGCCTTTCTGAAGGGCGTGGG  150

seq1  TAATGGCTACAAGAACAGTGATGGCTAGAAATCCTAGTTCCAATTGAGCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGGCTACAAGAACAGTGATGGCTAGAAATCCTAGTTCCAATTGAGCC  200

seq1  AAAGGAAAAGGACATCATCGGGAGGTTCTGATCCAGCTAACACAGTCATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGAAAAGGACATCATCGGGAGGTTCTGATCCAGCTAACACAGTCATC  250

seq1  GCTGGAGCTCCTAGGATCTCACAAGTAGGCATGTCACAAGCATTCTCTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGAGCTCCTAGGATCTCACAAGTAGGCATGTCACAAGCATTCTCTCA  300

seq1  TTTGATTCTAATGACAATTGTCTGAAGCAGTTATTGTTGTTGTTAATATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATTCTAATGACAATTGTCTGAAGCAGTTATTGTTGTTGTTAATATT  350

seq1  ATTTACAGAAAAAAAAAAGCTAAGCAATTTGCCTAGTGTTGCTCAGCTAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTACAGAAAAAAAAAAGCTAAGCAATTTGCCTAGTGTTGCTCAGCTAG  400

seq1  CACCTGACAGGATTAGGATACTAAGTAGGTTTGAGTGGCTGACCCAAGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTGACAGGATTAGGATACTAAGTAGGTTTGAGTGGCTGACCCAAGCT  450

seq1  ATGCAAATGACATCAGTCTACAATCCTTGTTCCCAGGGTGTGGTGGAAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAAATGACATCAGTCTACAATCCTTGTTCCCAGGGTGTGGTGGAAAG  500

seq1  TGCTGACTGTCCTCCCATACCTCTTCTCCTCTGATTTCTCTTTTTATTAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGACTGTCCTCCCATACCTCTTCTCCTCTGATTTCTCTTTTTATTAC  550

seq1  ACATAAAAGTTAGCTGGACATGTTTAGCTCACAATAAACATATAGCCAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAAAAGTTAGCTGGACATGTTTAGCTCACAATAAACATATAGCCAGA  600

seq1  TACCCAAAAATCGATTCATGGAATATGAGTTGAAGCAAAGTGTTATATTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCAAAAATCGATTCATGGAATATGAGTTGAAGCAAAGTGTTATATTT  650

seq1  CTAGTTAAGTGTTCTTAAAGAGAAAATTGGGTCTTTCTATCTTTCCTTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTTAAGTGTTCTTAAAGAGAAAATTGGGTCTTTCTATCTTTCCTTCT  700

seq1  ATTTTTACTAGCTGGCTAGTATGCAGATCTGATATCACACACACACATAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTACTAGCTGGCTAGTATGCAGATCTGATATCACACACACACATAC  750

seq1  ACACACACAAATAAGTCAACATCATGGAATTAAAAGAGAAATATACTGAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACAAATAAGTCAACATCATGGAATTAAAAGAGAAATATACTGAT  800

seq1  GGTGGCAGAAGTGCCCTATAGGAATGTTTTCACTGGTGGGTTACAATGCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGCAGAAGTGCCCTATAGGAATGTTTTCACTGGTGGGTTACAATGCT  850

seq1  GTCCTCATAACCTTGGTCTTCCACCCCAACATTTCAATGAGAGATACAGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTCATAACCTTGGTCTTCCACCCCAACATTTCAATGAGAGATACAGA  900

seq1  AAAACTCAAATACCGTTCTAGG-AAGGTTTCTGTTG-TTCCTCTGGGTAA  948
      |||||||||||||||||||||| ||||||||||||| |||||||||||||
seq2  AAAACTCAAATACCGTTCTAGGAAAGGTTTCTGTTGTTTCCTCTGGGTAA  950

seq1  AATCCTATCTACTGCACAAGACACATAGACTCTCTACCCGCATCTCTCCT  998
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  AATCCTATCTACTGCACAAGACACATAGACTCTCTA-CCGCATCTCTCCT  999

seq1  GCTATCATTCATGCCCTTTTGTGCCTTTTCTACTTTTCCTCATACAGTTT  1048
      ||||||| |||||||  |||||| ||||||||||||||||||||||||||
seq2  GCTATCA-TCATGCC--TTTGTG-CTTTTCTACTTTTCCTCATACAGTTT  1045

seq1  CACCCAAATCGATTCCGTTTGTACACGTTTCAGA-TTAATTA-TAGATCC  1096
      |||||||||||||  ||||||||||||||||||| ||||||| ||||| |
seq2  CACCCAAATCGAT--CGTTTGTACACGTTTCAGATTTAATTATTAGATTC  1093

seq1  CCAAACATCCGGGGGC  1112
      |  |||||||||||||
seq2  C--AACATCCGGGGGC  1107