BAC Information

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BAC

Clone NameB6Ng01-259N07
Chromosome9 (Build37)
Map Location 114,138,472 - 114,266,418
singlet/doubletdoublet
Overlap gene4921528I07Rik, Bcl2a1c
Upstream geneLOC100043802, LOC636680, Pdcd6ip, Clasp2, Ubp1, Fbxl2, Susd5, EG665719
Downstream gene4930520O04Rik, Crtap, Glb1, Ccr4, Trim71, LOC100043808, Cnot10, LOC665772, Dync1li1, Cmtm6, Cmtm7, Cmtm8, Gpd1l, LOC100043813, Osbpl10, LOC100043812, Stt3b, LOC100039567
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-259N07.bB6Ng01-259N07.g
ACCGA064912GA064913
length1,1751,120
definitionB6Ng01-259N07.b B6Ng01-259N07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(114,265,245 - 114,266,418)(114,138,472 - 114,139,594)
sequence
gaattcacttgatctccttcagttgtcttttttcccccaattttattagg
tatttacttcatttacatttcaaatgctattccaaaattcttctataccc
tccccaaccccctgctcccctacccacccactcctacttctttgccctgg
cgttcccctgtactggggcatataaagtttgcaagaccaaggggcctctc
ttcccaatgatggctgactaggccatcttctgctacatatgcagctagag
acacgagctctgggggtactgattagctcttattgttgttccacctatag
ggatacagaccccttcagatccttgggtactttctctagctcctccattg
ggagccttgtgttccacccaatagctgactgtgtgcatccacttttgtgt
ttgccaggcatggcatagcttcacaagagacaacaatatcagggtccttt
cagcaaaattaaaggcaggcctatagacgttttcatttttactgatctcc
agtacagcttgaaatcaggaatggtgataccttcagaagtcttttattgt
acattagggatttagctatcctggagttctgttgttccatatgaaggtga
gaggtgttctttcaaggtctgtagagttgtgttggaattttaatgggaat
tgtagattgcttttggtaagatggctatttccacacgatatttgtgacta
tggcccacacttgaatagcccagcgatagggcacttactcatggaagaaa
gttctgcccagcagcatgatttccaaaacgtaaattttcaagcagctttc
tataaactgcacattaagttagaatgcagagggacaagatttctggaaaa
tacgcattttgacaactctcccgtgacattcttatgcgagttaaagttag
aggcacattcttacaaagatccaagatctgatttctagatgtcaaactaa
tacagagctaggtgaatgtcagatgtggataaggaagagatcgagcttat
cctgccatcaggatattaaagtgactataataaaataaattaattaatga
aaataaataaatttcactttgacaagaggataagggaaaaggacaagaag
aattcaaattacccccagccccaattcttcaaggcatgaaaatcaaagcc
agttatttattatgtgcagatgttt
gaattcaaggcaaggacctggaggcaggaactggtgcacaggccaaggaa
aaattctgtctacctgcttgcttcttatgacttgatgagcctgctttttt
tgccatacctaggaccagtagcccagcaccactgcccaaagggagctggg
ccctccttcatgaatcactaactgagaaaatgaaccacagacttgcccac
tggcttacccacaggccactctggcggtggaggtcattttcccagttgag
gttccctcttcccaaatgactctagcttgtgtcaacttgaagaaataaga
ctcacagaagtgtagaagggatttgagatcaggtaagcaggttttgagtg
agggccctgcctagttttccacttaataatacactatagagttttagccc
aaaagaatattagagaccatgaacttcagtggactttggacaaattgagc
tctctgtgagcctttgaggagtgatgggcctgtgtagtttccagattcaa
ggagcctagtttggacaactctgatgcctgcaatggagactggtttagaa
taggtttaggtgtaagagagacgtggaatgaagaagaagatgttatttta
attatatttggagagaccgtctctcttcctacaagttgtatacagaagga
aactgtgcctgagagtagattcctttaaaaaccactcccaggatgcaaca
gaggcagttggggagatttaagggtattcatcttttcacctgttggcatg
actgagtgttcctcagacctagggtgccattgtgagaagaaagcagggga
ggctggaagcaccaaggagcctcaattagtgtcacattggcacagattca
gcagttggtttgtaatgtactgggacaacataatgtctttcagggtctaa
taattatctgttggagcctggaagggagaagttaattccattttgctttg
ttggagttcgtcaaagaccctcactcacaagaccacagagactgccattg
ctgcaaactgcagaggatttttttttatgattcatcattttgggaaccct
ccctctcagcacacaggccagaaggagagacccagaacgatgaagaccta
cctttttataccttgtatag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_114265245_114266418
seq2: B6Ng01-259N07.b_44_1218 (reverse)

seq1  AAACATCTGCACAT-ATAAATAACTGGCTTTGATTTTCATGCCTGGAAGA  49
      |||||||||||||| ||||||||||||||||||||||||||||| |||||
seq2  AAACATCTGCACATAATAAATAACTGGCTTTGATTTTCATGCCTTGAAGA  50

seq1  ATTGGGGGCTGGGGTTTATTTGATTTCTTTCTTTTTCTTTTTTCCTTTAT  99
      ||| |||||||||| | |||||| ||| ||||| | |  |||||| ||||
seq2  ATT-GGGGCTGGGGGTAATTTGAATTC-TTCTTGTCC--TTTTCCCTTAT  96

seq1  CCTCTTGTTCAAAGTGAATTTTATTTATTTTTCATTTATTTATTTATTTT  149
      ||||||| |||||||||| |||||||| |||||||| ||| |||||||||
seq2  CCTCTTG-TCAAAGTGAAATTTATTTA-TTTTCATTAATTAATTTATTTT  144

seq1  ATTTATAGTCACTTT-ATATCCTGATGGCA-GATAAGCTCGATCTCTTCC  197
      | ||||||||||||| |||||||||||||| |||||||||||||||||||
seq2  A-TTATAGTCACTTTAATATCCTGATGGCAGGATAAGCTCGATCTCTTCC  193

seq1  -TATCCACATCTGACATTCACCTAGCTCTGTATTAGTTTGACATCTAGAA  246
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCCACATCTGACATTCACCTAGCTCTGTATTAGTTTGACATCTAGAA  243

seq1  ATCAGATCTTGGATCTTTGT-AGAATGTGCCTCTAACTTTAACTCGCATA  295
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  ATCAGATCTTGGATCTTTGTAAGAATGTGCCTCTAACTTTAACTCGCATA  293

seq1  AGAATGTCACGGGAGAGTTGTCAAAATGCGTA-TTTCCAG-AATCTTGTC  343
      |||||||||||||||||||||||||||||||| ||||||| |||||||||
seq2  AGAATGTCACGGGAGAGTTGTCAAAATGCGTATTTTCCAGAAATCTTGTC  343

seq1  CCTCTGCATTCTAACTTAATGTGCAGTTTATAGAAAGCTGCTTGAAAA-T  392
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  CCTCTGCATTCTAACTTAATGTGCAGTTTATAGAAAGCTGCTTGAAAATT  393

seq1  TACGTTTTGGAAATCATGCTGCTGGGCAGAACTTTCTTCCATGAGTAAGT  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGTTTTGGAAATCATGCTGCTGGGCAGAACTTTCTTCCATGAGTAAGT  443

seq1  GCCCTATCGCTGGGCTATTCAAGTGTGGGCCATAGTCACAAATATCGTGT  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTATCGCTGGGCTATTCAAGTGTGGGCCATAGTCACAAATATCGTGT  493

seq1  GGAAATAGCCATCTTACCAAAAGCAATCTACAATTCCCATTAAAATTCCA  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATAGCCATCTTACCAAAAGCAATCTACAATTCCCATTAAAATTCCA  543

seq1  ACACAACTCTACAGACCTTGAAAGAACACCTCTCACCTTCATATGGAACA  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAACTCTACAGACCTTGAAAGAACACCTCTCACCTTCATATGGAACA  593

seq1  ACAGAACTCCAGGATAGCTAAATCCCTAATGTACAATAAAAGACTTCTGA  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAACTCCAGGATAGCTAAATCCCTAATGTACAATAAAAGACTTCTGA  643

seq1  AGGTATCACCATTCCTGATTTCAAGCTGTACTGGAGATCAGTAAAAATGA  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTATCACCATTCCTGATTTCAAGCTGTACTGGAGATCAGTAAAAATGA  693

seq1  AAACGTCTATAGGCCTGCCTTTAATTTTGCTGAAAGGACCCTGATATTGT  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACGTCTATAGGCCTGCCTTTAATTTTGCTGAAAGGACCCTGATATTGT  743

seq1  TGTCTCTTGTGAAGCTATGCCATGCCTGGCAAACACAAAAGTGGATGCAC  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCTTGTGAAGCTATGCCATGCCTGGCAAACACAAAAGTGGATGCAC  793

seq1  ACAGTCAGCTATTGGGTGGAACACAAGGCTCCCAATGGAGGAGCTAGAGA  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTCAGCTATTGGGTGGAACACAAGGCTCCCAATGGAGGAGCTAGAGA  843

seq1  AAGTACCCAAGGATCTGAAGGGGTCTGTATCCCTATAGGTGGAACAACAA  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTACCCAAGGATCTGAAGGGGTCTGTATCCCTATAGGTGGAACAACAA  893

seq1  TAAGAGCTAATCAGTACCCCCAGAGCTCGTGTCTCTAGCTGCATATGTAG  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAGCTAATCAGTACCCCCAGAGCTCGTGTCTCTAGCTGCATATGTAG  943

seq1  CAGAAGATGGCCTAGTCAGCCATCATTGGGAAGAGAGGCCCCTTGGTCTT  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGATGGCCTAGTCAGCCATCATTGGGAAGAGAGGCCCCTTGGTCTT  993

seq1  GCAAACTTTATATGCCCCAGTACAGGGGAACGCCAGGGCAAAGAAGTAGG  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAACTTTATATGCCCCAGTACAGGGGAACGCCAGGGCAAAGAAGTAGG  1043

seq1  AGTGGGTGGGTAGGGGAGCAGGGGGTTGGGGAGGGTATAGAAGAATTTTG  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGGTGGGTAGGGGAGCAGGGGGTTGGGGAGGGTATAGAAGAATTTTG  1093

seq1  GAATAGCATTTGAAATGTAAATGAAGTAAATACCTAATAAAATTGGGGGA  1142
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAGCATTTGAAATGTAAATGAAGTAAATACCTAATAAAATTGGGGGA  1143

seq1  AAAAAGACAACTGAAGGAGATCAAGTGAATTC  1174
      ||||||||||||||||||||||||||||||||
seq2  AAAAAGACAACTGAAGGAGATCAAGTGAATTC  1175

seq1: chr9_114138472_114139594
seq2: B6Ng01-259N07.g_69_1188

seq1  GAATTCAAGGCAAGGACCTGGAGGCAGGAACTGGTGCACAGGCCAAGGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGGCAAGGACCTGGAGGCAGGAACTGGTGCACAGGCCAAGGAA  50

seq1  AAATTCTGTCTACCTGCTTGCTTCTTATGACTTGATGAGCCTGCTTTTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCTGTCTACCTGCTTGCTTCTTATGACTTGATGAGCCTGCTTTTTT  100

seq1  TGCCATACCTAGGACCAGTAGCCCAGCACCACTGCCCAAAGGGAGCTGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCATACCTAGGACCAGTAGCCCAGCACCACTGCCCAAAGGGAGCTGGG  150

seq1  CCCTCCTTCATGAATCACTAACTGAGAAAATGAACCACAGACTTGCCCAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCCTTCATGAATCACTAACTGAGAAAATGAACCACAGACTTGCCCAC  200

seq1  TGGCTTACCCACAGGCCACTCTGGCGGTGGAGGTCATTTTCCCAGTTGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTACCCACAGGCCACTCTGGCGGTGGAGGTCATTTTCCCAGTTGAG  250

seq1  GTTCCCTCTTCCCAAATGACTCTAGCTTGTGTCAACTTGAAGAAATAAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCCTCTTCCCAAATGACTCTAGCTTGTGTCAACTTGAAGAAATAAGA  300

seq1  CTCACAGAAGTGTAGAAGGGATTTGAGATCAGGTAAGCAGGTTTTGAGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACAGAAGTGTAGAAGGGATTTGAGATCAGGTAAGCAGGTTTTGAGTG  350

seq1  AGGGCCCTGCCTAGTTTTCCACTTAATAATACACTATAGAGTTTTAGCCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCCCTGCCTAGTTTTCCACTTAATAATACACTATAGAGTTTTAGCCC  400

seq1  AAAAGAATATTAGAGACCATGAACTTCAGTGGACTTTGGACAAATTGAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAATATTAGAGACCATGAACTTCAGTGGACTTTGGACAAATTGAGC  450

seq1  TCTCTGTGAGCCTTTGAGGAGTGATGGGCCTGTGTAGTTTCCAGATTCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGTGAGCCTTTGAGGAGTGATGGGCCTGTGTAGTTTCCAGATTCAA  500

seq1  GGAGCCTAGTTTGGACAACTCTGATGCCTGCAATGGAGACTGGTTTAGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCCTAGTTTGGACAACTCTGATGCCTGCAATGGAGACTGGTTTAGAA  550

seq1  TAGGTTTAGGTGTAAGAGAGACGTGGAATGAAGAAGAAGATGTTATTTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTTTAGGTGTAAGAGAGACGTGGAATGAAGAAGAAGATGTTATTTTA  600

seq1  ATTATATTTGGAGAGACCGTCTCTCTTCCTACAAGTTGTATACAGAAGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATATTTGGAGAGACCGTCTCTCTTCCTACAAGTTGTATACAGAAGGA  650

seq1  AACTGTGCCTGAGAGTAGATTCCTTTAAAAACCACTCCCAGGATGCAACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGTGCCTGAGAGTAGATTCCTTTAAAAACCACTCCCAGGATGCAACA  700

seq1  GAGGCAGTTGGGGAGATTTAAGGGTATTCATCTTTTCACCTGTTGGCATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCAGTTGGGGAGATTTAAGGGTATTCATCTTTTCACCTGTTGGCATG  750

seq1  ACTGAGTGTTCCTCAGACCTAGGGTGCCATTGTGAGAAGAAAGCAGGGGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAGTGTTCCTCAGACCTAGGGTGCCATTGTGAGAAGAAAGCAGGGGA  800

seq1  GGCTGGAAGCACCAAGGAGCCTCAATTAGTGTCACATTGGCACAGATTCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGGAAGCACCAAGGAGCCTCAATTAGTGTCACATTGGCACAGATTCA  850

seq1  GCAGTTGGTTTGTAATGTACT-GGACAACATAATGTCTTTCAGGGTCTAA  899
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  GCAGTTGGTTTGTAATGTACTGGGACAACATAATGTCTTTCAGGGTCTAA  900

seq1  TAATTTATCTGTTTGGAGCCTGG-AGGGAGAAGTTAATTCCATTTTGCTT  948
      ||| ||||||| ||||||||||| ||||||||||||||||||||||||||
seq2  TAA-TTATCTG-TTGGAGCCTGGAAGGGAGAAGTTAATTCCATTTTGCTT  948

seq1  TGTTGGAGTTCGTCAAAAGACCCTCACTCACAAAGACCACAGAGACTGCC  998
      |||||||||||||| |||||||||||||||| ||||||||||||||||||
seq2  TGTTGGAGTTCGTC-AAAGACCCTCACTCAC-AAGACCACAGAGACTGCC  996

seq1  ATTGCTGCAAACTGCAAGAGGATTTTTTTTTATTGATTCATCATTTTGGG  1048
      ||||||||||||||| |||||||||||||||| |||||||||||||||||
seq2  ATTGCTGCAAACTGC-AGAGGATTTTTTTTTA-TGATTCATCATTTTGGG  1044

seq1  GACCC-CCCTCTCAGCACACAGGCCAG-AGGAGAGACCCAGAACGATGAA  1096
       |||| ||||||||||||||||||||| |||||||||||||||||||| |
seq2  AACCCTCCCTCTCAGCACACAGGCCAGAAGGAGAGACCCAGAACGATG-A  1093

seq1  AGAACACACTTTTTATACCTTGTATAG  1123
      ||| |   |||||||||||||||||||
seq2  AGACCTACCTTTTTATACCTTGTATAG  1120