BAC Information

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BAC

Clone NameB6Ng01-260E08
Chromosome9 (Build37)
Map Location 106,876,939 - 106,877,650
singlet/doubletsinglet
Overlap geneDock3
Upstream gene1110001D15Rik, LOC669311, 6230410P16Rik, Wdr82, Ppm1m, Twf2, Tlr9, Alas1, Wdr51a, Dusp7, Rpl29, Acy1, Abhd14a, Abhd14b, Pcbp4, Parp3, Rrp9, Iqcf1, Iqcf5, Iqcf3, Iqcf4, LOC100041096, Grm2, Tex264, Rad54l2, LOC100041128, Vprbp, Armet
Downstream geneMapkapk3, Cish, Hemk1, 6430571L13Rik, Cacna2d2, Tmem115, Cyb561d2, Tusc4, Zmynd10, Rassf1, Tusc2, Hyal2, Hyal1, Nat6, Hyal3, Ifrd2, BY080835, Sema3b, Gnai2, Slc38a3, Gnat1, Sema3f, Rbm5, Rbm6, Mon1a, Mst1r, 4921517D21Rik, Camkv, Traip
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-260E08.bB6Ng01-260E08.g
ACCGA065234GA065235
length7151,186
definitionB6Ng01-260E08.b B6Ng01-260E08.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcagagactcaaatggctcaaacatggaggagagaagggaggaaag
gggcgaagggagggaaagggagagggagagagaaaaaacatatgtgccct
taggcttctagatctgagctgtggaaggaagatgtggtctcttgaggaaa
atgtaatcatgtattttaatgaagtggggaaacacgatggcattagtagt
cttatttatttatgttacatttatgtattcatgcagtggggagcacatgc
ccatgtggaagtcagaggacaacttaggggagctggttctctcattctac
cacgtgggacccgaagatcaaactcaggccatcaaggctggcatcatgag
cctttgccagctgagccatcttgctgcccaaactaataatattgatccat
aacttttgagaggcagaacactataggaggaaaataatagatttttatat
tagacccatatgagttcaaattccagctttaagccaggtgtgatgtttca
tgtctgtaattttagctgttcaggaggttgaggtaggagggggcaacttt
taagaccagcctggaagacacaacaaaacttaatgtaaataaatattcag
ttttgtcatttgcctgcaatatgtttgatgagttgctctaatccttggtt
ttttcacctgtaaaatggggataaatgctattcttggcatatgggaaaaa
ttaggtgcattgatt
gaattctcacctgaggaataccgaatggcagagaagcacttgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacactcctccattgttggtg
ggagtgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaactggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagatgccccaacaggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacctagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
gaaactcacacaatatgtattcactgataagtggatattagccccaaacc
taggatacccaagatataagatataatttgctaaacacatgaaactcaag
gagaatgaagactgaagtgtggacactatgcccctccttagatttgggaa
caaaacacccatggaaggagttacagagacggagtttggagctgagatga
aaggatggaccatgtagagactgccatagccagggatccaccccataatc
agcatccaaacgctgacaccattgcatacactagcaagattttattgaaa
ggacgcagatgtagctgtctcttgtgagactatgcccgggcccagcaaac
acagaagtggatgctcacagtcagctaatggatggatcatagggctccca
atggaggagctagagaaagtagccagagctaaagggatctgcaccctata
ggtggaacacattatgagctaaccagtacccggagctcttgactctagct
gcatatatatcaaagaatgcctagtccgcatcactgagagagccattgga
actgccacttatatgccagtcacggaaacgccagtctatatggagtgtct
gtacgtgaagtggtattctgacactgttcatcatat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_106876939_106877650
seq2: B6Ng01-260E08.b_43_757

seq1  GAATTCAGAGACTCAAATGGCTCAAACATGGAGGAGAGAAGGGAGGAAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAGACTCAAATGGCTCAAACATGGAGGAGAGAAGGGAGGAAAG  50

seq1  GGGCGAAGGGAGGGAAAGGGAGAGGGAGAGAGAAAAAACATATGTGCCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCGAAGGGAGGGAAAGGGAGAGGGAGAGAGAAAAAACATATGTGCCCT  100

seq1  TAGGCTTCTAGATCTGAGCTGTGGAAGGAAGATGTGGTCTCTTGAGGAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCTTCTAGATCTGAGCTGTGGAAGGAAGATGTGGTCTCTTGAGGAAA  150

seq1  ATGTAATCATGTATTTTAATGAAGTGGGGAAACACGATGGCATTAGTAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAATCATGTATTTTAATGAAGTGGGGAAACACGATGGCATTAGTAGT  200

seq1  CTTATTTATTTATGTTACATTTATGTATTCATGCAGTGGGGAGCACATGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATTTATTTATGTTACATTTATGTATTCATGCAGTGGGGAGCACATGC  250

seq1  CCATGTGGAAGTCAGAGGACAACTTAGGGGAGCTGGTTCTCTCATTCTAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGTGGAAGTCAGAGGACAACTTAGGGGAGCTGGTTCTCTCATTCTAC  300

seq1  CACGTGGGACCCGAAGATCAAACTCAGGCCATCAAGGCTGGCATCATGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGTGGGACCCGAAGATCAAACTCAGGCCATCAAGGCTGGCATCATGAG  350

seq1  CCTTTGCCAGCTGAGCCATCTTGCTGCCCAAACTAATAATATTGATCCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGCCAGCTGAGCCATCTTGCTGCCCAAACTAATAATATTGATCCAT  400

seq1  AACTTTTGAGAGGCAGAACACTATAGGAGGAAAATAATAGATTTTTATAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTTGAGAGGCAGAACACTATAGGAGGAAAATAATAGATTTTTATAT  450

seq1  TAGACCCATATGAGTTCAAATTCCAGCTTTAAGCCAGGTGTGATGTTTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACCCATATGAGTTCAAATTCCAGCTTTAAGCCAGGTGTGATGTTTCA  500

seq1  TGTCTGTAATTTTAGCTGTTCAGGAGGTTGAGGTAGGAGGGGGCAAC-TT  549
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TGTCTGTAATTTTAGCTGTTCAGGAGGTTGAGGTAGGAGGGGGCAACTTT  550

seq1  TAAGACCAGCCTGGAAGACACAACAAAACTTAATGTAAATAAATATTCAG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGACCAGCCTGGAAGACACAACAAAACTTAATGTAAATAAATATTCAG  600

seq1  TTTTGTCATTTGCCTGCAATATGTTTGATGAGTTGCTCTAATCCTTGG-T  648
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TTTTGTCATTTGCCTGCAATATGTTTGATGAGTTGCTCTAATCCTTGGTT  650

seq1  TTTTCACCTGTAAAATGGGGAT-AATGCTATTCTTGGCATATGGGAAAAA  697
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  TTTTCACCTGTAAAATGGGGATAAATGCTATTCTTGGCATATGGGAAAAA  700

seq1  TTAGGTGCATTGATT  712
      |||||||||||||||
seq2  TTAGGTGCATTGATT  715