BAC Information

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BAC

Clone NameB6Ng01-260P23
Chromosome9 (Build37)
Map Location 43,544,344 - 43,674,167
singlet/doubletdoublet
Overlap genePvrl1, LOC100042548
Upstream geneGrik4, Arhgef12, LOC545339, Tmem136, Pou2f3, LOC628726, Oaf, D630033O11Rik, Trim29, LOC384931
Downstream geneThy1, Usp2, Mfrp, Rnf26, LOC100042569, Mcam, Cbl, BC038167, Pdzd3, Nlrx1, Abcg4, Mizf, Tmem24, Dpagt1, H2afx, Hmbs, Vps11, LOC100043172, Hyou1, LOC100043178, Slc37a4, Trappc4, Rps25, Ccdc84, Foxr1, Upk2, Bcl9l, Blr1, Ddx6, LOC667406, LOC100042660, Treh, Phldb1, Arcn1, 1500035H01Rik, Tmem25, BC021608, Mll1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-260P23.bB6Ng01-260P23.g
ACCGA065776GA065777
length1,1231,097
definitionB6Ng01-260P23.b B6Ng01-260P23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(43,544,344 - 43,545,468)(43,673,054 - 43,674,167)
sequence
gaattccctgggatttagagtggtgagtggcaggactgttaggaggagct
cttgaccagaagcaaggagagcacttactttatctcagacttcttttttt
ttttttttttttttttttttttccctttcaagacagggtttctctgtgta
gtcctggctgtcctgaaactcactccgtaaaccaggctgaccttgaactc
aaaaatccgcctgcctctgcctcccgagtgctggactaaaggcgtgcgcc
accgtgcccagcgatcccaaacttctttctggagaactggatggttcaag
atggggcaggatggagctcagttgttagagagcttgcctagcaagcatga
agtcctgggttcaatccccagcaacaaagaggccaggaatggtggcacac
acctataatctcagcatttgtccggtagaggcaggaggaaggaagcttaa
agtaagacttggctacaaagtaaatttgaggccagtgttgatgagcttgt
ctcaaaagtaacaacagaaaagtaacagaacccttggacttcagttccac
cagccattaagggccctggaacatctctcgaggttgcccttctgctaagc
atcttggttccctttggacacacctgatcaccagcgctggggtggggtgc
ccgttgtattcagctggtcccaagagcaacggcagccttggcaaggggga
agctctgcagtgatctctctaggaataacaataattaaatgctgctaagc
actgtgggatacagaagtaccatcataatcaccacagctaccatggtgat
gataacagtaattagaaactgtggtttccagctccccccaggagcacagc
ctaggggtgattgttggtcttgtcaagtgaggaaagggggttaccttata
agcaggcggggcattctcttgggaattggctggagatttggacaatgctt
tctttcgtaggttccattctttctgaccttgacttgtgcttctttctctt
tctctcccacatctttctttttttctctcctcgcacttcagcttcactga
ctttaaccgagttaggaacccggacaggtacttttattcagtagcacttc
atgtttctttccttgcacaggtt
gaattcttttatttcttcataatccaggacccatctgggcatttcagtgc
acagtagacactgcaatccctgaagagtatgtagtcttatggagctaata
aatcaagggtgggctaacacaagcatggatcacacagctgtcagaagcac
acacatgtcacttgtgccttcgcctgaattacttgacccaacactgctgg
accttttggccatacaaacaccaatgtggcaacggtcctgcaactagctg
gcacttacacatcaatagccactcccaggcagtgtcctcagtgattgtca
tcttgtttagcccctgagatatctgaggtcaggaaagaatgatgacattt
tcccataattattgtgtgtgcacttgtttgtgtgtatgcgcatgtgcaca
ggggtctatatgctcactgatccctcctcccttttatttttttgagacag
gatctctctgaattgtagctcatcaattcagctaggcttgctggctaatg
agcttcagggctttgcttgtctctagttccccatgcgatcttctgctagg
gttacaggaccatggccctggcttccaggggttaaaactcaaatgtcctc
attgtgcaataggtcctgactgagccatctctccagctggaacaatggca
ttttaaagcttgtggaatgcatccatgaggctgtcaccccacggataagc
agaaccacccagtccctacctctgccacatgtgtctctgagtgtaaattc
ccatccctgggagatgacaacagctcacaggggttgagaaaaaaaaaatg
aatcggttagttatggtttctacgactgaccagctagcatttgatggggg
acactccattttagggcagaaaggaagccccacccagtttacacctcagt
tgaacctgcagaactgagtgtgcacgaaggtaccatttggcgctccctga
gggcacccctgggagaggacctgtgtcctgctcagacgatgaaactggac
taaatgagatgtgtgtttaaagacaggtgagtcaagcatagggtccaatt
ggactgcaatagaagaaagaaaaccaaggcagacaacaagcccccac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_43544344_43545468
seq2: B6Ng01-260P23.b_47_1169

seq1  GAATTCCCTGGGATTTAGAGTGGTGAGTGGCAGGACTGTTAGGAGGAGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTGGGATTTAGAGTGGTGAGTGGCAGGACTGTTAGGAGGAGCT  50

seq1  CTTGACCAGAAGCAAGGAGAGCACTTACTTTATCTCAGACTTCTTTTTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGACCAGAAGCAAGGAGAGCACTTACTTTATCTCAGACTTCTTTTTTT  100

seq1  TTTTTTTTTTTTTTTTTTTTTTCCCTTTCAAGACAGGGTTTCTCTGTGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTTTTTTTTTTTTCCCTTTCAAGACAGGGTTTCTCTGTGTA  150

seq1  GTCCTGGCTGTCCTGAAACTCACTCCGTAGACCAGGCTGACCTTGAACTC  200
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  GTCCTGGCTGTCCTGAAACTCACTCCGTAAACCAGGCTGACCTTGAACTC  200

seq1  AGAAATCCGCCTGCCTCTGCCTCCCGAGTGCTGGACTAAAGGCGTGCGCC  250
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATCCGCCTGCCTCTGCCTCCCGAGTGCTGGACTAAAGGCGTGCGCC  250

seq1  ACCGTGCCCAGCGATCCCAGACTTCTTTCTGGAGAACTGGATGGTTCAAG  300
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  ACCGTGCCCAGCGATCCCAAACTTCTTTCTGGAGAACTGGATGGTTCAAG  300

seq1  ATGGGGCAGGATGGAGCTCAGTTGTTAGAGAGCTTGCCTAGCAAGCATGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGGCAGGATGGAGCTCAGTTGTTAGAGAGCTTGCCTAGCAAGCATGA  350

seq1  AGTCCTGGGTTCAATCCCCAGCAACAAAGAGGCCAGGAATGGTGGCACAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCTGGGTTCAATCCCCAGCAACAAAGAGGCCAGGAATGGTGGCACAC  400

seq1  ACCTATAATCTCAGCATTTGTCCGGTAGAGGCAGGAGGAAGGAAGCTTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTATAATCTCAGCATTTGTCCGGTAGAGGCAGGAGGAAGGAAGCTTAA  450

seq1  AGTAAGACTTGGCTACAAAGTAAATTTGAGGCCAGTGTTGATGAGCTTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAGACTTGGCTACAAAGTAAATTTGAGGCCAGTGTTGATGAGCTTGT  500

seq1  CTCAAAAGTAACAACAGAAAAGTAACAGAACCCTTGGACTTCAGTTCCAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAAAGTAACAACAGAAAAGTAACAGAACCCTTGGACTTCAGTTCCAC  550

seq1  CAGCCATTAAGGGCCCTGGAACATCTCTCGAGGTTGCCCTTCTGCTAAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCATTAAGGGCCCTGGAACATCTCTCGAGGTTGCCCTTCTGCTAAGC  600

seq1  ATCTTGGTTCCCTTTGGACACACCTGATCACCAGCGCTGGGGTGGGGTGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTGGTTCCCTTTGGACACACCTGATCACCAGCGCTGGGGTGGGGTGC  650

seq1  CCGTTGTATTCAGCTGGTCCCAAGAGCAACGGCAGCCTTGGCAAGGGGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTTGTATTCAGCTGGTCCCAAGAGCAACGGCAGCCTTGGCAAGGGGGA  700

seq1  AGCTCTGCAGTGATCTCTCTAGGAATAACAATAATTAAATGCTGCTAAGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCTGCAGTGATCTCTCTAGGAATAACAATAATTAAATGCTGCTAAGC  750

seq1  ACTGTGGGATACAGAAGTACCATCATAATCACCACAGCTACCATGGTGAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTGGGATACAGAAGTACCATCATAATCACCACAGCTACCATGGTGAT  800

seq1  GATAACAGTAATTAGAAACTGTGGTTTCCAGCTCCCCCCAGGAGCACAGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAACAGTAATTAGAAACTGTGGTTTCCAGCTCCCCCCAGGAGCACAGC  850

seq1  CTA-GGGTGA-TGTTGGTC-TGTCAGGTGAGGAAAGGGGG-TACC-TATA  895
      ||| |||||| |||||||| ||||| |||||||||||||| |||| ||||
seq2  CTAGGGGTGATTGTTGGTCTTGTCAAGTGAGGAAAGGGGGTTACCTTATA  900

seq1  AGCAGGCGGGGCA-TCTCT--GGGATTGGCTGGAGATTTGGAC-ATGCTT  941
      ||||||||||||| |||||  || ||||||||||||||||||| ||||||
seq2  AGCAGGCGGGGCATTCTCTTGGGAATTGGCTGGAGATTTGGACAATGCTT  950

seq1  TC-TTCGTAGGGTCCCATC-TTCTGACCCTGAC-TGTGC-TCTTCCTCTT  987
      || |||||||| |||  || |||||||| |||| ||||| |||| |||||
seq2  TCTTTCGTAGGTTCCATTCTTTCTGACCTTGACTTGTGCTTCTTTCTCTT  1000

seq1  CCTCTCCCACCATC-TTCTTTTTTCCTCTCCTCGCACCTCAGCCTCAACT  1036
       |||||||| |||| ||||||||| |||||||||||| ||||| || |||
seq2  TCTCTCCCA-CATCTTTCTTTTTTTCTCTCCTCGCACTTCAGCTTC-ACT  1048

seq1  GACCTTACCCCGAGGTTTGGGGACCCCGGAGCAGGGTAACCTTTTATTCA  1086
      ||| |||  |||||   |  ||| |||||| || ||||  ||||||||||
seq2  GACTTTA-ACCGAG---TTAGGAACCCGGA-CA-GGTA--CTTTTATTCA  1090

seq1  GGGTAGCACTTCCAATGTTTCTTCTCCTGCCAACAGGTT  1125
        ||||||||||  |||||||||  | |||  |||||||
seq2  --GTAGCACTTC--ATGTTTCTTTCCTTGC--ACAGGTT  1123

seq1: chr9_43673054_43674167
seq2: B6Ng01-260P23.g_64_1160 (reverse)

seq1  GTGGGGGCTTTGTTGTCTGCTTTGTGTTTCTTTCCTTCTATTGGCAGTCC  50
      |||||||| ||||||||||| |||  ||||||| |||||||| |||||||
seq2  GTGGGGGC-TTGTTGTCTGCCTTGGTTTTCTTT-CTTCTATT-GCAGTCC  47

seq1  AATGGGACCCTTATGCCTGGACTTCCAACTGTCTTTAAAACACACAATCC  100
      ||| |||||| |||| || ||||  || |||||||| |||||||||   |
seq2  AATTGGACCC-TATG-CTTGACT--CACCTGTCTTT-AAACACACA--TC  90

seq1  TCATTTAAGTCCAAGTTTCATCGTCTGAGCAGGAACACAGGTCCTCTCCC  150
      |||||| ||||| |||||||||||||||||||| ||||||||||||||||
seq2  TCATTT-AGTCC-AGTTTCATCGTCTGAGCAGG-ACACAGGTCCTCTCCC  137

seq1  AGGGGGTGCCCCTCAGGGAGCGCCAAATGGTACCTTTCGTGCACACTCAG  200
      | |||||| ||||||||||||||||||||||||| |||||||||||||||
seq2  A-GGGGTG-CCCTCAGGGAGCGCCAAATGGTACC-TTCGTGCACACTCAG  184

seq1  TTCTGCAGGTTCAACTGAGGTGTAAACTGGGTGGGGCTTCCTTTCTGCCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TTCTGCAGGTTCAACTGAGGTGTAAACTGGGTGGGGCTTCCTTTCTG-CC  233

seq1  CTAAAATGGAGTGTCCCCCATCAAATGCTAGCTGGTCAGTCGTAGAAACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAATGGAGTGTCCCCCATCAAATGCTAGCTGGTCAGTCGTAGAAACC  283

seq1  ATAACTAACCGATTCATTTTTTTTTTCTCAACCCCTGTGAGCTGTTGTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACTAACCGATTCATTTTTTTTTTCTCAACCCCTGTGAGCTGTTGTCA  333

seq1  TCTCCCAGGGATGGGAATTTACACTCAGAGACACATGTGGCAGAGGTAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCCAGGGATGGGAATTTACACTCAGAGACACATGTGGCAGAGGTAGG  383

seq1  GACTGGGTGGTTCTGCTTATCCGTGGGGTGACAGCCTCATGGATGCATTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGGGTGGTTCTGCTTATCCGTGGGGTGACAGCCTCATGGATGCATTC  433

seq1  CACAAGCTTTAAAATGCCATTGTTCCAGCTGGAGAGATGGCTCAGTCAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAGCTTTAAAATGCCATTGTTCCAGCTGGAGAGATGGCTCAGTCAGG  483

seq1  ACCTATTGCACAATGAGGACATTTGAGTTTTAACCCCTGGAAGCCAGGGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTATTGCACAATGAGGACATTTGAGTTTTAACCCCTGGAAGCCAGGGC  533

seq1  CATGGTCCTGTAACCCTAGCAGAAGATCGCATGGGGAACTAGAGACAAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGTCCTGTAACCCTAGCAGAAGATCGCATGGGGAACTAGAGACAAGC  583

seq1  AAAGCCCTGAAGCTCATTAGCCAGCAAGCCTAGCTGAATTGATGAGCTAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCCCTGAAGCTCATTAGCCAGCAAGCCTAGCTGAATTGATGAGCTAC  633

seq1  AATTCAGAGAGATCCTGTCTCAAAAAAATAAAAGGGAGGAGGGATCAGTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCAGAGAGATCCTGTCTCAAAAAAATAAAAGGGAGGAGGGATCAGTG  683

seq1  AGCATATAGACCCCTGTGCACATGCGCATACACACAAACAAGTGCACACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATATAGACCCCTGTGCACATGCGCATACACACAAACAAGTGCACACA  733

seq1  CAATAATTATGGGAAAATGTCATCATTCTTTCCTGACCTCAGATATCTCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAATTATGGGAAAATGTCATCATTCTTTCCTGACCTCAGATATCTCA  783

seq1  GGGGCTAAACAAGATGACAATCACTGAGGACACTGCCTGGGAGTGGCTAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCTAAACAAGATGACAATCACTGAGGACACTGCCTGGGAGTGGCTAT  833

seq1  TGATGTGTAAGTGCCAGCTAGTTGCAGGACCGTTGCCACATTGGTGTTTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGTGTAAGTGCCAGCTAGTTGCAGGACCGTTGCCACATTGGTGTTTG  883

seq1  TATGGCCAAAAGGTCCAGCAGTGTTGGGTCAAGTAATTCAGGCGAAGGCA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGCCAAAAGGTCCAGCAGTGTTGGGTCAAGTAATTCAGGCGAAGGCA  933

seq1  CAAGTGACATGTGTGTGCTTCTGACAGCTGTGTGATCCATGCTTGTGTTA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTGACATGTGTGTGCTTCTGACAGCTGTGTGATCCATGCTTGTGTTA  983

seq1  GCCCACCCTTGATTTATTAGCTCCATAAGACTACATACTCTTCAGGGATT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCACCCTTGATTTATTAGCTCCATAAGACTACATACTCTTCAGGGATT  1033

seq1  GCAGTGTCTACTGTGCACTGAAATGCCCAGATGGGTCCTGGATTATGAAG  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTGTCTACTGTGCACTGAAATGCCCAGATGGGTCCTGGATTATGAAG  1083

seq1  AAATAAAAGAATTC  1114
      ||||||||||||||
seq2  AAATAAAAGAATTC  1097