BAC Information

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BAC

Clone NameB6Ng01-261E23
Chromosome9 (Build37)
Map Location 106,662,780 - 106,796,477
singlet/doubletdoublet
Overlap geneRad54l2, LOC100041128, Vprbp, Armet
Upstream geneE330026B02Rik, EG665033, 1110001D15Rik, LOC669311, 6230410P16Rik, Wdr82, Ppm1m, Twf2, Tlr9, Alas1, Wdr51a, Dusp7, Rpl29, Acy1, Abhd14a, Abhd14b, Pcbp4, Parp3, Rrp9, Iqcf1, Iqcf5, Iqcf3, Iqcf4, LOC100041096, Grm2, Tex264
Downstream geneDock3, Mapkapk3, Cish, Hemk1, 6430571L13Rik, Cacna2d2, Tmem115, Cyb561d2, Tusc4, Zmynd10, Rassf1, Tusc2, Hyal2, Hyal1, Nat6, Hyal3, Ifrd2, BY080835, Sema3b, Gnai2, Slc38a3, Gnat1, Sema3f, Rbm5, Rbm6, Mon1a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-261E23.bB6Ng01-261E23.g
ACCGA066010GA066011
length1,126612
definitionB6Ng01-261E23.b B6Ng01-261E23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(106,662,780 - 106,663,911)(106,795,866 - 106,796,477)
sequence
gaattcagctgtctctctttagctagatactttcaaatgtgcaaaataat
taaggtcttctagttttggttagtttgtttgttttggaaaagtaattttt
cacttagaatgttatgagttgaaagcatttttttaatgaattacaacata
aaactctgggaaaccatttcatgcccccacacaatcatggccatagggaa
atagacagcagcagagagggagacatgacaacaggagaagatatgatata
aacctagactctgaaaacttctcacatagccaggtgtggtgatgcacaag
gaggcaaaggcaggcggatatctgagtctgaggccatcctggtctacaga
gtgagttccaggacagccagggctacacagagaaaccctgtctcaaaaaa
ccaaaaccaaacaaaataaatgctcacattacatatacattaaaacacta
gaccagccaagcccagatctcacattcataatctctgctctagaataatc
tataatctctggcctagaatctacagtgaatatgtaggaagactgtctca
gaaaactctctatgacccctattactctagttctaggggccctaatgccc
tccatgggcatcctgcatgcacactgatgtatatacatacatgcaggcta
atcaatcacaaataagataaaatcttaaggaaaaaaaaaagagactggca
ggaaatctatatgaatcctctaataatataaataaaagtcaatgatttct
agattgatactaatcatataaagcattactttaaaacgctatgtatctgt
gagagtatctgcacaccactcgagtgcttggttacagaagaagccagaag
aaggtgtcagatgccctggaatgggaattccaggtgttgtgagctgcaat
atgagctatggaaactgaacacaggtcttctacaagaacagcaagtgctc
ttaccactgagccatctttctagcgggcctcacagtgtttctgactaccc
tagactcactttgtgatcaggctggcaaggacctcagagataaagccatg
tgccaccatgcactccttccccacccagcataattatttttaagccactt
aaaccctgtattgtatacagttattt
gaattctttcatgtcagggcactgacgttactcttggtattatggtgggg
gtatggtaatatttcaccagggtgcttctaagttactttttaaaataact
tgtcttgaggcaattgttttccttttatttgcttacattcccatcagtga
tggccataaaactgccttctccttgatgagcaggtatgttgctcccctgt
tcccttaactagttggccttctggcctgctatggccaagttctggcccca
gctgcttatcccttctccacaattctttccaaacagaaaaacccatggtc
acagtgtttttctcttagaaacaagtttaatagaactgtcagcaaataac
ctataggaaaagaaagaaggcccatttccgttcacagtatgttggggccc
aggtaccaacagtgtagggctttctgataccctcaggatcattcaggcag
agtggagactgttgaggatgtaggtaggccaatccaatagccccagcacc
aagggcacacacacctgttcctgagcccagactcactggtaagcttgttt
ctggaccgtctgggttcacaggtatgagggtcaagtctagcttgggatgt
gactcttacgta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_106662780_106663911
seq2: B6Ng01-261E23.b_47_1172

seq1  GAATTCAGCTGTCTCTCTTTAGCTAGATACTTTCAAATGTGCAAAATAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCTGTCTCTCTTTAGCTAGATACTTTCAAATGTGCAAAATAAT  50

seq1  TAAGGTCTTCTAGTTTTGGTTAGTTTGTTTGTTTTGGAAAAGTAATTTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGTCTTCTAGTTTTGGTTAGTTTGTTTGTTTTGGAAAAGTAATTTTT  100

seq1  CACTTAGAATGTTATGAGTTGAAAGCATTTTTTTAATGAATTACAACATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTAGAATGTTATGAGTTGAAAGCATTTTTTTAATGAATTACAACATA  150

seq1  AAACTCTGGGAAACCATTTCATGCCCCCACACAATCATGGCCATAGGGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTCTGGGAAACCATTTCATGCCCCCACACAATCATGGCCATAGGGAA  200

seq1  ATAGACAGCAGCAGAGAGGGAGACATGACAACAGGAGAAGATATGATATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGACAGCAGCAGAGAGGGAGACATGACAACAGGAGAAGATATGATATA  250

seq1  AACCTAGACTCTGAAAACTTCTCACATAGCCAGGTGTGGTGATGCACAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTAGACTCTGAAAACTTCTCACATAGCCAGGTGTGGTGATGCACAAG  300

seq1  GAGGCAAAGGCAGGCGGATATCTGAGTCTGAGGCCATCCTGGTCTACAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCAAAGGCAGGCGGATATCTGAGTCTGAGGCCATCCTGGTCTACAGA  350

seq1  GTGAGTTCCAGGACAGCCAGGGCTACACAGAGAAACCCTGTCTCAAAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGTTCCAGGACAGCCAGGGCTACACAGAGAAACCCTGTCTCAAAAAA  400

seq1  CCAAAACCAAACAAAATAAATGCTCACATTACATATACATTAAAACACTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAACCAAACAAAATAAATGCTCACATTACATATACATTAAAACACTA  450

seq1  GACCAGCCAAGCCCAGATCTCACATTCATAATCTCTGCTCTAGAATAATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAGCCAAGCCCAGATCTCACATTCATAATCTCTGCTCTAGAATAATC  500

seq1  TATAATCTCTGGCCTAGAATCTACAGTGAATATGTAGGAAGACTGTCTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATCTCTGGCCTAGAATCTACAGTGAATATGTAGGAAGACTGTCTCA  550

seq1  GAAAACTCTCTATGACCCCTATTACTCTAGTTCTAGGGGCCCTAATGCCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACTCTCTATGACCCCTATTACTCTAGTTCTAGGGGCCCTAATGCCC  600

seq1  TCCATGGGCATCCTGCATGCACACTGATGTATATACATACATGCAGGCTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATGGGCATCCTGCATGCACACTGATGTATATACATACATGCAGGCTA  650

seq1  ATCAATCACAAATAAGATAAAATCTTAAGGAAAAAAAAAAGAGACTGGCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAATCACAAATAAGATAAAATCTTAAGGAAAAAAAAAAGAGACTGGCA  700

seq1  GGAAATCTATATGAATCCTCTAATAATATAAATAAAAGTCAATGATTTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATCTATATGAATCCTCTAATAATATAAATAAAAGTCAATGATTTCT  750

seq1  AGATTGATACTAATCATATAAAGCATTACTTTAAAACGCTATGTATCTGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTGATACTAATCATATAAAGCATTACTTTAAAACGCTATGTATCTGT  800

seq1  GAGAGTATCTGCACACCACTCGAGTGCTTGGTTACAGAAGAAGCCAGAAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGTATCTGCACACCACTCGAGTGCTTGGTTACAGAAGAAGCCAGAAG  850

seq1  AAGGTGTCAGATGCCCTGGAATGGGAATTCCAGGTGTTGTGAGCTGCAAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTGTCAGATGCCCTGGAATGGGAATTCCAGGTGTTGTGAGCTGCAAT  900

seq1  ATGAGCTATGGAAACTGAACACAGGTCTTCTACAAGAACAGCAAGTGCTC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGCTATGGAAACTGAACACAGGTCTTCTACAAGAACAGCAAGTGCTC  950

seq1  TTAACCACTGAGCCATCTTTCTAGCGGGGCCTCACAGTGTTTCTGACTAC  1000
      || |||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TT-ACCACTGAGCCATCTTTCTAGC-GGGCCTCACAGTGTTTCTGACTAC  998

seq1  CCTAGAACTCACTTTGTGGATCAGGCTGGCCAAGAACTCAGAGATTAAAG  1050
      ||||| ||||||||||| |||||||||||| | || |||||||| |||||
seq2  CCTAG-ACTCACTTTGT-GATCAGGCTGGCAAGGACCTCAGAGA-TAAAG  1045

seq1  CCATGTGCCACCATGCAACTCCCTTCCCCACCCAGCATAATTATTTTTAA  1100
      |||||||||||||||| ||| |||||||||||||||||||||||||||||
seq2  CCATGTGCCACCATGC-ACT-CCTTCCCCACCCAGCATAATTATTTTTAA  1093

seq1  ACCACT--AAACCTGTATTGTATACAAGTTATTT  1132
       |||||  || |||||||||||||| ||||||||
seq2  GCCACTTAAACCCTGTATTGTATAC-AGTTATTT  1126

seq1: chr9_106795866_106796477
seq2: B6Ng01-261E23.g_68_679 (reverse)

seq1  TACCTAAGAATCACATCCCAAGCTAGACTTGACCCTCATACCTGTGAACC  50
      ||| ||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TACGTAAGAGTCACATCCCAAGCTAGACTTGACCCTCATACCTGTGAACC  50

seq1  CAGACGGTCCAGAAACAAGCTTACCAGTGAGTCTGGGCTCAGGAACAGGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACGGTCCAGAAACAAGCTTACCAGTGAGTCTGGGCTCAGGAACAGGT  100

seq1  GTGTGTGCCCTTGGTGCTGGGGCTATTGGATTGGCCTACCTACATCCTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGCCCTTGGTGCTGGGGCTATTGGATTGGCCTACCTACATCCTCA  150

seq1  ACAGTCTCCACTCTGCCTGAATGATCCTGAGGGTATCAGAAAGCCCTACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTCTCCACTCTGCCTGAATGATCCTGAGGGTATCAGAAAGCCCTACA  200

seq1  CTGTTGGTACCTGGGCCCCAACATACTGTGAACGGAAATGGGCCTTCTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTGGTACCTGGGCCCCAACATACTGTGAACGGAAATGGGCCTTCTTT  250

seq1  CTTTTCCTATAGGTTATTTGCTGACAGTTCTATTAAACTTGTTTCTAAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCCTATAGGTTATTTGCTGACAGTTCTATTAAACTTGTTTCTAAGA  300

seq1  GAAAAACACTGTGACCATGGGTTTTTCTGTTTGGAAAGAATTGTGGAGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAACACTGTGACCATGGGTTTTTCTGTTTGGAAAGAATTGTGGAGAA  350

seq1  GGGATAAGCAGCTGGGGCCAGAACTTGGCCATAGCAGGCCAGAAGGCCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATAAGCAGCTGGGGCCAGAACTTGGCCATAGCAGGCCAGAAGGCCAA  400

seq1  CTAGTTAAGGGAACAGGGGAGCAACATACCTGCTCATCAAGGAGAAGGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTTAAGGGAACAGGGGAGCAACATACCTGCTCATCAAGGAGAAGGCA  450

seq1  GTTTTATGGCCATCACTGATGGGAATGTAAGCAAATAAAAGGAAAACAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTATGGCCATCACTGATGGGAATGTAAGCAAATAAAAGGAAAACAAT  500

seq1  TGCCTCAAGACAAGTTATTTTAAAAAGTAACTTAGAAGCACCCTGGTGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCAAGACAAGTTATTTTAAAAAGTAACTTAGAAGCACCCTGGTGAA  550

seq1  ATATTACCATACCCCCACCATAATACCAAGAGTAACGTCAGTGCCCTGAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTACCATACCCCCACCATAATACCAAGAGTAACGTCAGTGCCCTGAC  600

seq1  ATGAAAGAATTC  612
      ||||||||||||
seq2  ATGAAAGAATTC  612