BAC Information

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BAC

Clone NameB6Ng01-262G11
Chromosome9 (Build37)
Map Location 3,870,212 - 3,871,371
singlet/doubletsinglet
Overlap geneGucy1a2
Upstream gene4930433N12Rik, LOC664797, Olfr369-ps1, Alkbh8, Cwf19l2, LOC384911
Downstream geneLOC100039236, LOC384912, LOC100039253, Aasdhppt, Kbtbd3, LOC664860, 8430410K20Rik, Gria4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-262G11.bB6Ng01-262G11.g
ACCGA066827GA066828
length5951,152
definitionB6Ng01-262G11.b B6Ng01-262G11.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
tttttagaagaatctcaaatagctgaaaaacattttaaaaatgttcaaca
ttgtaaactattagcaaaattcaaataaaactactgtgagatttcatctt
acatctgtcataaaagctaagataacacagtgagacagagcatgcttatg
agggtgtggagcaaagaaaactctcctctattgctgatgaaagtgcaaac
ttgtgcaactctatggaaatcagtattgtagttcctcactaaattgggaa
ttagtctacctcaataatgcttttatgcatataccaaaaagatattccat
tctaccacaaggacccttgctcatcgaggttcattgggggggggggggtt
cattcataatagccagaaactgtaaacaacatagatgttgttcagctgaa
ggatggataaaaaaatatgtagtacatttatacagtgaaggattactcag
ctgttaaaaaatgaaatcatgaaattgcatagcaagcaaatggaagcaac
taggaaatataatactgagtgagatccagaaagacacatatggtttgtat
tctctcataagtggatatttgatatgttagataaattcatattaa

gaattccttagggaaaagatacccagaaaacagcagagtgaacatttggg
tttatctttatcctttcctggagtataattttttattgaaaaatcaggaa
agttgaggtaaaattctccaatgctgccaaaagtacaagtcctgagaggc
attggtcatttgtaatttgtcttgtgattatgtttggatttactcacaca
aacatttcttatgatactatgttaatataaagattaaattgatatctccc
cacgtagggaacatctagtccagcagaaactgctgctgcaagatcccttt
ggggtatcttctctcatgaggatattttgggtgctgactcaacctatctt
atccataaggtccttcagctgtggcaggctgggagggtgtcactgggtgc
ccactaagtgcttgagagagaagtggtatgagctcagcaatgctgctgta
attttatggttaccaagactaggatcatacccataggctgctctctcgta
gctcttgctgaaaggtatcaggagaggtttcagagtacagcagtgtgaac
atagaaaccacttccaaagtttcaactgtcgtatcatttaactcaactgt
aactttctggtaatgaggctcacagtttaggactgaatcagtaatatcaa
caccactttggtgttagatctttgaatatatcaaagttctgttttggagt
ttgcttctatctgagctgcctgtggctggttcattaccacatcacacttg
aatagaaagaaagttgcaaagatactgttcattttttttcagtgctttga
catgaaagagagggatcaaatcaaactagcaagaaatgaccactacaaaa
actaattcataaattttgtgagacacaagacacacacaaacacacacaca
cacacacacacacacacacacacacacacacacacagtaactgccagcgg
ccacactaactgggttcctgagtgggaggctggagccgtatgtaaggaaa
cagcgagagaaatatggaggccaagacacatttctgttcagaccccaaag
ttcactaagaatctgtgttttataaagagggggagtccattcccatctat
caattcttggtgcctgtcacagccttagtgatctgcgatgctgtctcaga
aa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_3870212_3871371
seq2: B6Ng01-262G11.g_66_1217

seq1  GAATTCCTTAGGGAAAAGATACCCAGAAAACAGCAGAGTGAACATTTGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTAGGGAAAAGATACCCAGAAAACAGCAGAGTGAACATTTGGG  50

seq1  TTTATCTTTATCCTTTCCTGGAGTATAATTTTTTATTGAAAAATCAGGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATCTTTATCCTTTCCTGGAGTATAATTTTTTATTGAAAAATCAGGAA  100

seq1  AGTTGAGGTAAAATTCTCCAATGCTGCCAAAAGTACAAGTCCTGAGAGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGAGGTAAAATTCTCCAATGCTGCCAAAAGTACAAGTCCTGAGAGGC  150

seq1  ATTGGTCATTTGTAATTTGTCTTGTGATTATGTTTGGATTTACTCACACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGTCATTTGTAATTTGTCTTGTGATTATGTTTGGATTTACTCACACA  200

seq1  AACATTTCTTATGATACTATGTTAATATAAAGATTAAATTGATATCTCCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTTCTTATGATACTATGTTAATATAAAGATTAAATTGATATCTCCC  250

seq1  CACGTAGGGAACATCTAGTCCAGCAGAAACTGCTGCTGCAAGATCCCTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGTAGGGAACATCTAGTCCAGCAGAAACTGCTGCTGCAAGATCCCTTT  300

seq1  GGGGTATCTTCTCTCATGAGGATATTTTGGGTGCTGACTCAACCTATCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTATCTTCTCTCATGAGGATATTTTGGGTGCTGACTCAACCTATCTT  350

seq1  ATCCATAAGGTCCTTCAGCTGTGGCAGGCTGGGAGGGTGTCACTGGGTGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCATAAGGTCCTTCAGCTGTGGCAGGCTGGGAGGGTGTCACTGGGTGC  400

seq1  CCACTAAGTGCTTGAGAGAGAAGTGGTATGAGCTCAGCAATGCTGCTGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTAAGTGCTTGAGAGAGAAGTGGTATGAGCTCAGCAATGCTGCTGTA  450

seq1  ATTTTATGGTTACCAAGACTAGGATCATACCCATAGGCTGCTCTCTCGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTATGGTTACCAAGACTAGGATCATACCCATAGGCTGCTCTCTCGTA  500

seq1  GCTCTTGCTGAAAGGTATCAGGAGAGGTTTCAGAGTACAGCAGTGTGAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTTGCTGAAAGGTATCAGGAGAGGTTTCAGAGTACAGCAGTGTGAAC  550

seq1  ATAGAAACCACTTCCAAAGTTTCAACTGTCGTATCATTTAACTCAACTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAAACCACTTCCAAAGTTTCAACTGTCGTATCATTTAACTCAACTGT  600

seq1  AACTTTCTGGTAATGAGGCTCACAGTTTAGGACTGAATCAGTAATATCAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTCTGGTAATGAGGCTCACAGTTTAGGACTGAATCAGTAATATCAA  650

seq1  CACCACTTTGGTGTTAGATCTTTGAATATATCAAAGTTCTGTTTTGGAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCACTTTGGTGTTAGATCTTTGAATATATCAAAGTTCTGTTTTGGAGT  700

seq1  TTGCTTCTATCTGAGCTGCCTGTGGCTGGTTCATTACCACATCACACTTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTCTATCTGAGCTGCCTGTGGCTGGTTCATTACCACATCACACTTG  750

seq1  AATAGAAAGAAAGTTGCAAAGATACTGTTCA-TTTTTTTCAGTGCTTTGA  799
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  AATAGAAAGAAAGTTGCAAAGATACTGTTCATTTTTTTTCAGTGCTTTGA  800

seq1  CATGAAAGAGAGGGATCAAATCAAACTAGCAAGAAATGACCACTACAAAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAAAGAGAGGGATCAAATCAAACTAGCAAGAAATGACCACTACAAAA  850

seq1  ACTAATTCATAAATTTTGTGAAGACACAAGACACACACAAACACACACAC  899
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  ACTAATTCATAAATTTTGTG-AGACACAAGACACACACAAACACACACAC  899

seq1  ACACACACACACACACACACACACACACACACACACAAGTAACTGCCAGC  949
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  ACACACACACACACACACACACACACACACACACAC-AGTAACTGCCAGC  948

seq1  GGCCACACTAACTGGGTTCCTGAGTGGGAGGCTGGAGCCGTATGTAAGGA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCACACTAACTGGGTTCCTGAGTGGGAGGCTGGAGCCGTATGTAAGGA  998

seq1  AACAGCGAGAGAAATAATGGAGGCCAAGACACATTTCTGTTCAAGACCCC  1049
      ||||||||||||||| |||||||||||||||||||||||||| |||||||
seq2  AACAGCGAGAGAAAT-ATGGAGGCCAAGACACATTTCTGTTC-AGACCCC  1046

seq1  AAAGTTCACTAAGAATCTGTG-TTTATAAAGAGGGGAGGCCCATCCCCAT  1098
      ||||||||||||||||||||| ||||||||||||||  | |||| |||||
seq2  AAAGTTCACTAAGAATCTGTGTTTTATAAAGAGGGGGAGTCCATTCCCAT  1096

seq1  CTATCCATTCTTGGTGCCTGTCACCAGCCTTTAGGTGATCTGCCAGATGC  1148
      ||||| ||||||||||||||||| |||||||   |||||||||  |||||
seq2  CTATCAATTCTTGGTGCCTGTCA-CAGCCTT--AGTGATCTGC--GATGC  1141

seq1  TGTCTCCAGAAA  1160
      ||||| ||||||
seq2  TGTCT-CAGAAA  1152


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