BAC Information

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BAC

Clone NameB6Ng01-262G20
Chromosome9 (Build37)
Map Location 36,673,196 - 36,822,933
singlet/doubletdoublet
Overlap geneFez1, Pknox2
Upstream gene9230113P08Rik, EG546123, LOC100041618, LOC100042485, EG639025, LOC671003, EG434396, A630095E13Rik, Acrv1, Chek1, Stt3a, Ei24, LOC627681
Downstream geneLOC100042545, 1810021J13Rik, Slc37a2, LOC100042561, Ccdc15, Hepacam, Robo4, Robo3, BC024479, Esam1, Vsig2, Nrgn, Spa17, Siae, Tbrg1, Panx3, LOC666881, EG627798, Olfr160, Olfr151, Olfr874, Olfr875, Olfr876, Olfr877, Olfr145, EG627852, Olfr878, GA_x5J8B7W60AJ-1667802-1666911, Olfr880-ps1, Olfr881, Olfr882-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-262G20.bB6Ng01-262G20.g
ACCGA066845GA066846
length1,123799
definitionB6Ng01-262G20.b B6Ng01-262G20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(36,821,808 - 36,822,933)(36,673,196 - 36,673,995)
sequence
gaattcctcactattaagcttactgtggccgggcagtggtggcgcacacc
tttaattccctgcatatatatatatatggcttactctgcttttttgtctc
cacagccttaccatgtttatgtttcttaggcctctctagtcatcctgagg
gtactgtagaacaagctttgcacagcccttgtttttacaataggtgaata
ggctgtgtggtatgcctgggtttatactactaattaatggcaaagttggc
actgtgggtcagactcagaacccctgacctctgccccagatcccactgcc
atagccctaggcagatgtctagatagaaaagggtacaactggagggggtc
catccttccctatgtgaagcctgaactgctcaggaagtatgtgggtggtg
agctcctaaggccctgcctcaacttctttgaccacaaatcatggccttca
ggaatcctcccaattccacatggcctaacctcatgacaccgtcacgtgga
tcctccccttttatcaaaattgcctctacagtgtttctcctctctgtggg
aaatgttggcaggaatgaaggacaaagttatgtccacatcactgaactgg
agagggaattagcaggtactcagaaaataatacagaaaagatactactta
ggctgctgcacttgggaggctgaagcaggggcatcagcctggttagagat
catgtctcagagaaacagaaaacgggcttgatgtacaggcctgaggatct
gagttcaatccctggagccctcataaaggtagaaagagaacattgactcc
acaaatatagcattcactggcctcctataataataacaaaaattatataa
ataaataaaaatatgggccaagcatggtagcacaggcctttagtctcagc
attcaggaggtagaggcaggcaaatctctgtgcattcgaaggtaagcctg
gctcacataggaagttccaagagaaccaggactacatgagagacctgttt
ctgtgtgtgtatgtgtgtattatatatatatatacatgtatatctataca
tataaagtgtatatacatacaccacatatatatatatgatggaaatcaac
cctcatactactgaagatatatt
gaattcatcacccgcccagtcaggccattctcaggcacacaaagggccca
aacatagaaacactcagcaaagcaaagcgaaatggcaaaaaacagaagga
ggaggacagcttcaaagagcaaaacaaagcaggaagtgccaactgagtca
tcagatacccaggctaggcagaaaagagaaggaagagtgagaaataaaag
gtgctccttaaatctattctatgtattaatatgcttaattggtatgtggc
aaatttatgtgtttatgggctgcagtgtcatttgaaacattttaatacat
ttaatattgtatacagtgtaatgaaaatatccaggtgactggcttctctg
tcatctaattcaaagtaatttctttctttctttctttctttctttctttc
tttctttctttctttctttctttctttctttcttccttccttccttcctt
ccttccttccttcctttctttctttctttctttctatttatttattatta
tacataagtacattgtagctgacttcagacacaccagaagagggcgttag
atctcattacgggtggttgtgagccaccatgtggttgctgggatttgaac
tcaggacctttggaagagcagtcagtgctcttacccactgagccatctct
ccaggccaagtcatttctttctagtggggtttctctccctctccctctct
cctttcccctcccctcaccctccccctctctgtctctctgtctctctctc
cctctctctctccctctctttctccctctctctccccctccctctcccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_36821808_36822933
seq2: B6Ng01-262G20.b_44_1166 (reverse)

seq1  AATATATCTTTCAGTAGTATGAGGGTTGTATTTTCATCATATATATATAT  50
      |||||||| ||||||||||||||||||| |||| ||||||||||||||||
seq2  AATATATC-TTCAGTAGTATGAGGGTTG-ATTTCCATCATATATATATAT  48

seq1  GT-GTGTATGTATATATATGTATATATGTATAGATATACATGTATATATA  99
      || ||||||||||||| |  | ||||||||||||||||||||||||||||
seq2  GTGGTGTATGTATATACA-CTTTATATGTATAGATATACATGTATATATA  97

seq1  TATATATATACACACATACACACACAGAAACAGGGTCTCTCAATGTAGTC  149
      |||||| ||||||||||||||||||||||||| |||||||| ||||||||
seq2  TATATA-ATACACACATACACACACAGAAACA-GGTCTCTC-ATGTAGTC  144

seq1  CTGGTTCTCTTGGAACTTCCTATGTGAGCCAGGCTTACC-TCGAATGCAC  198
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  CTGGTTCTCTTGGAACTTCCTATGTGAGCCAGGCTTACCTTCGAATGCAC  194

seq1  AGAGATTTGCCTGCCTCTACCTCCTGAATGCTGAGACTAAAGGCCTGTGC  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATTTGCCTGCCTCTACCTCCTGAATGCTGAGACTAAAGGCCTGTGC  244

seq1  TACCATGCTTGG-CCATATTTTTATTTATTTATATAATTTTTGTTATTAT  297
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  TACCATGCTTGGCCCATATTTTTATTTATTTATATAATTTTTGTTATTAT  294

seq1  TATAGGAGGCCAGTGAATGCTATATTTGTGGAGTCAATGTTCTCTTTCTA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGGAGGCCAGTGAATGCTATATTTGTGGAGTCAATGTTCTCTTTCTA  344

seq1  CCTTTATGAGGGCTCCAGGGATTGAACTCAGATCCTCAGGCCTGTACATC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTATGAGGGCTCCAGGGATTGAACTCAGATCCTCAGGCCTGTACATC  394

seq1  AAGCCCGTTTTCTGTTTCTCTGAGACATGATCTCTAACCAGGCTGATGCC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCCGTTTTCTGTTTCTCTGAGACATGATCTCTAACCAGGCTGATGCC  444

seq1  CCTGCTTCAGCCTCCCAAGTGCAGCAGCCTAAGTAGTATCTTTTCTGTAT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCTTCAGCCTCCCAAGTGCAGCAGCCTAAGTAGTATCTTTTCTGTAT  494

seq1  TATTTTCTGAGTACCTGCTAATTCCCTCTCCAGTTCAGTGATGTGGACAT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTCTGAGTACCTGCTAATTCCCTCTCCAGTTCAGTGATGTGGACAT  544

seq1  AACTTTGTCCTTCATTCCTGCCAACATTTCCCACAGAGAGGAGAAACACT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTGTCCTTCATTCCTGCCAACATTTCCCACAGAGAGGAGAAACACT  594

seq1  GTAGAGGCAATTTTGATAAAAGGGGAGGATCCACGTGACGGTGTCATGAG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAGGCAATTTTGATAAAAGGGGAGGATCCACGTGACGGTGTCATGAG  644

seq1  GTTAGGCCATGTGGAATTGGGAGGATTCCTGAAGGCCATGATTTGTGGTC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGGCCATGTGGAATTGGGAGGATTCCTGAAGGCCATGATTTGTGGTC  694

seq1  AAAGAAGTTGAGGCAGGGCCTTAGGAGCTCACCACCCACATACTTCCTGA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAGTTGAGGCAGGGCCTTAGGAGCTCACCACCCACATACTTCCTGA  744

seq1  GCAGTTCAGGCTTCACATAGGGAAGGATGGACCCCCTCCAGTTGTACCCT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTTCAGGCTTCACATAGGGAAGGATGGACCCCCTCCAGTTGTACCCT  794

seq1  TTTCTATCTAGACATCTGCCTAGGGCTATGGCAGTGGGATCTGGGGCAGA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTATCTAGACATCTGCCTAGGGCTATGGCAGTGGGATCTGGGGCAGA  844

seq1  GGTCAGGGGTTCTGAGTCTGACCCACAGTGCCAACTTTGCCATTAATTAG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCAGGGGTTCTGAGTCTGACCCACAGTGCCAACTTTGCCATTAATTAG  894

seq1  TAGTATAAACCCAGGCATACCACACAGCCTATTCACCTATTGTAAAAACA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTATAAACCCAGGCATACCACACAGCCTATTCACCTATTGTAAAAACA  944

seq1  AGGGCTGTGCAAAGCTTGTTCTACAGTACCCTCAGGATGACTAGAGAGGC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCTGTGCAAAGCTTGTTCTACAGTACCCTCAGGATGACTAGAGAGGC  994

seq1  CTAAGAAACATAAACATGGTAAGGCTGTGGAGACAAAAAAGCAGAGTAAG  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGAAACATAAACATGGTAAGGCTGTGGAGACAAAAAAGCAGAGTAAG  1044

seq1  CCATATATATATATATGCAGGGAATTAAAGGTGTGCGCCACCACTGCCCG  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATATATATATATATGCAGGGAATTAAAGGTGTGCGCCACCACTGCCCG  1094

seq1  GCCACAGTAAGCTTAATAGTGAGGAATTC  1126
      |||||||||||||||||||||||||||||
seq2  GCCACAGTAAGCTTAATAGTGAGGAATTC  1123

seq1: chr9_36673196_36673995
seq2: B6Ng01-262G20.g_68_866

seq1  GAATTCATCACCCGCCCAGTCAGGCCATTCTCAGGCACACAAAGGGCCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCACCCGCCCAGTCAGGCCATTCTCAGGCACACAAAGGGCCCA  50

seq1  AACATAGAAACACTCAGCAAAGCAAAGCGAAATGGCAAAAAACAGAAGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATAGAAACACTCAGCAAAGCAAAGCGAAATGGCAAAAAACAGAAGGA  100

seq1  GGAGGACAGCTTCAAAGAGCAAAACAAAGCAGGAAGTGCCAACTGAGTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGACAGCTTCAAAGAGCAAAACAAAGCAGGAAGTGCCAACTGAGTCA  150

seq1  TCAGATACCCAGGCTAGGCAGAAAAGAGAAGGAAGAGTGAGAAATAAAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGATACCCAGGCTAGGCAGAAAAGAGAAGGAAGAGTGAGAAATAAAAG  200

seq1  GTGCTCCTTAAATCTATTCTATGTATTAATATGCTTAATTGGTATGTGGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTCCTTAAATCTATTCTATGTATTAATATGCTTAATTGGTATGTGGC  250

seq1  AAATTTATGTGTTTATGGGCTGCAGTGTCATTTGAAACATTTTAATACAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTATGTGTTTATGGGCTGCAGTGTCATTTGAAACATTTTAATACAT  300

seq1  TTAATATTGTATACAGTGTAATGAAAATATCCAGGTGACTGGCTTCTCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATATTGTATACAGTGTAATGAAAATATCCAGGTGACTGGCTTCTCTG  350

seq1  TCATCTAATTCAAAGTAATTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCTAATTCAAAGTAATTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTC  400

seq1  TTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTCCTTCCTTCCTTCCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTCCTTCCTTCCTTCCTT  450

seq1  CCTTCCTTCCTTCCTTTCTTTCTTTCTTTCTTTCTATTTATTTATTATTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCTTCCTTCCTTTCTTTCTTTCTTTCTTTCTATTTATTTATTATTA  500

seq1  TACATAAGTACATTGTAGCTGACTTCAGACACACCAGAAGAGGGCGTTAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATAAGTACATTGTAGCTGACTTCAGACACACCAGAAGAGGGCGTTAG  550

seq1  ATCTCATTACGGGTGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCATTACGGGTGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAAC  600

seq1  TCAGGACCTTTGGAAGAGCAGTCAGTGCTCTTACCCACTGAGCCATCTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGACCTTTGGAAGAGCAGTCAGTGCTCTTACCCACTGAGCCATCTCT  650

seq1  CCAGGCCAAGTCATTTCTTTCTAGTGGGGTTTCTCTCCCTCTCCCTCTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGCCAAGTCATTTCTTTCTAGTGGGGTTTCTCTCCCTCTCCCTCTCT  700

seq1  CCTTTCCCCTCCCCTCCCCCTCCCCCTCTCTGTCTCTCTGTCTCTCTCTC  750
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  CCTTTCCCCTCCCCTCACCCTCCCCCTCTCTGTCTCTCTGTCTCTCTCTC  750

seq1  CCTCTCTCTCTCCCTCTCTTTCTCCCTCTCTCTCCCCCCTCCCTCTCCCC  800
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  CCTCTCTCTCTCCCTCTCTTTCTCCCTCTCTCT-CCCCCTCCCTCTCCCC  799