BAC Information

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BAC

Clone NameB6Ng01-262L03
Chromosome9 (Build37)
Map Location 20,109,472 - 20,318,663
singlet/doubletdoublet
Overlap geneOlfr18, Zfp560, 4921534A09Rik, EG624824, Zfp26, Zfp426, 5730601F06Rik
Upstream geneOlfr845, Olfr1522-ps1, Olfr846, LOC665697, Olfr847, GA_x5J8B7W6RL5-13451244-13452122, Olfr849, Olfr850, Olfr851, Olfr852-ps1, Olfr853, Olfr854, Olfr855, Zfp75, EG624341, LOC665751, Olfr857, Olfr858-ps1, Olfr58, Olfr859, Olfr860, GA_x5J8B7W6RL5-13004417-13003354, Olfr862, Olfr77, EG665823, Olfr863-ps1, Olfr864-ps1, Olfr865-ps1, Olfr866, Olfr867, Olfr868, Olfr869, Olfr870, Olfr871, Olfr872, Olfr39, Olfr873
Downstream gene7030419G21Rik, LOC100041205, 2210010B09Rik, 5730577I03Rik, Fbxl12, Ubl5, Pin1, Olfm2, Col5a3, Rdh8, A230050P20Rik, Angptl6, Ppan, Eif3s4, Dnmt1, Edg5, Mrpl4, Icam1, Icam4, Icam5, Glp1, B230118G17Rik, Raver1, Tyk2, Cdc37, Pde4a, Keap1, Edg8, Atg4d, BC021438, Cdkn2d, Ap1m2, Slc44a2, Ilf3, Qtrt1, Dnm2, Tmed1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-262L03.bB6Ng01-262L03.g
ACCGA067042GA067043
length1,0291,020
definitionB6Ng01-262L03.b B6Ng01-262L03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(20,109,472 - 20,109,996)(20,317,658 - 20,318,663)
sequence
gaattctgtattacacatttaaaaaagaaagattgtaagagaaggatgga
atggaggagactatccaaacaacgccatttaaatgcagcagcatcaacac
atatatgaacccatagagactgtggcagcgtgcccatggctggcaggagt
ctacatggtttgcaccagaaggggtttcaattctgagagaagcagacaca
tgcttccattcctaatccagaagctatgtccaactgacagtatctcacaa
gtgaaaactcagttctctccagcagagtctcactggggattcaaaccact
cttatggccaggacctatgcccaggaatagatgtccaacacacagacaaa
ctcagtgacatctttggaggctctttgtcccataaggctttgacagtact
ttttctcacattttttttaatatatgttattgttttgggctttatgtttc
ttaaggagaattcctgtgcatacagatatgtgtgtctctgtgtctttata
tatatctcatgttatttctttggcttttttcttctgtttgtttgttttgc
tctattccaatttgtttattttattattattctttacatgtatatttgtt
ttataataaaagaaagtttgtgggttctgatagtaggaaggtgaggagac
tctcaaaggtattcaagaggggaaaccataatctgaatatattatatgaa
aaacatctattaaaacttaaacttcttgggttggagaggtggtttagcag
ttaagagcactgactgttcttccatagaccctaaattcaagtcccagcaa
ccacatggtggctcacagccaactgtaatgaagtccaatataccctcttg
tggtgtgtctgaagagattgacagtgtacccatatgaaacacatgtcagt
gacaaagacagaccactacttgagagtaaaaggctgagaaacaaattttc
ctagcaatggtcccaagaaagaagctggagtagccattttaatattgaat
aaaatcacttttaaccaaagttacccaaa
gaattccaagatgcactgcaaacagctcaagtacatcccctttaccttgt
gtaaggggtgaagccaggccttggagctgccaggtgagcactcggtacta
ctgagtgcatcctgccagtgaacctacgggattcggcaggtcacagatac
ctgataccttgtaacctttcagacaaggcagtccagtgtgtgtgtatgag
agagacagagacagccagatagagagatagacaggagaggagggggcaga
tagagacaggctctgttgcctaagctgacttggaattcccttccaagtgt
tggagttaaaagtgtgtgctccatacccatagtaacttcatacagatgtt
cttgtcaccagtcttgtctttgtatacccttgattgtccagacaaatggt
gggcagttccttatgagtcactgtacatgtgtcctggcaaggcaaacagc
aaacattcattcatcttctgctttttaaaaacatctgtgtgtatgacata
tgtgtttatatgaagtgtgagtgtgtgcgtatgactgtggagtcagggta
acctcaggtgagagagggagaggagtttgtgtgtgtgagagtgatgcctc
tgagttttctctttccactataggtttaggaattaactcaggctgtcagt
cttaacccactgagtcatattgctagcctagtaatcccttcttttaattt
gctgctaggtagcctatacctgggaacagtgatagaagggtttattcaga
atacaaaaattaattttttatgaggcaaggtcttgtgtaatccccaggct
cgcctagaaactcactcgctaggccaaaggatgacgctgttcctcgcctt
tccacgtgctgggttttacagtctcctcagcagcctggctaaccgtgctg
gggtatgtacccagggttccatgagtgctaaggcaagcatgctggcagct
gagctacatcctcagactgttttcttttatataggatttatttttaccta
atctgttgtggtatgcatgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_20109472_20109996
seq2: B6Ng01-262L03.b_45_569

seq1  GAATTCTGTATTACACATTTAAAAAAGAAAGATTGTAAGAGAAGGATGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTATTACACATTTAAAAAAGAAAGATTGTAAGAGAAGGATGGA  50

seq1  ATGGAGGAGACTATCCAAACAACGCCATTTAAATGCAGCAGCATCAACAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAGGAGACTATCCAAACAACGCCATTTAAATGCAGCAGCATCAACAC  100

seq1  ATATATGAACCCATAGAGACTGTGGCAGCGTGCCCATGGCTGGCAGGAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATGAACCCATAGAGACTGTGGCAGCGTGCCCATGGCTGGCAGGAGT  150

seq1  CTACATGGTTTGCACCAGAAGGGGTTTCAATTCTGAGAGAAGCAGACACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACATGGTTTGCACCAGAAGGGGTTTCAATTCTGAGAGAAGCAGACACA  200

seq1  TGCTTCCATTCCTAATCCAGAAGCTATGTCCAACTGACAGTATCTCACAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTCCATTCCTAATCCAGAAGCTATGTCCAACTGACAGTATCTCACAA  250

seq1  GTGAAAACTCAGTTCTCTCCAGCAGAGTCTCACTGGGGATTCAAACCACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAAACTCAGTTCTCTCCAGCAGAGTCTCACTGGGGATTCAAACCACT  300

seq1  CTTATGGCCAGGACCTATGCCCAGGAATAGATGTCCAACACACAGACAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATGGCCAGGACCTATGCCCAGGAATAGATGTCCAACACACAGACAAA  350

seq1  CTCAGTGACATCTTTGGAGGCTCTTTGTCCCATAAGGCTTTGACAGTACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGTGACATCTTTGGAGGCTCTTTGTCCCATAAGGCTTTGACAGTACT  400

seq1  TTTTCTCACATTTTTTTTAATATATGTTATTGTTTTGGGCTTTATGTTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTCACATTTTTTTTAATATATGTTATTGTTTTGGGCTTTATGTTTC  450

seq1  TTAAGGAGAATTCCTGTGCATACAGATATGTGTGTCTCTGTGTCTTTATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGGAGAATTCCTGTGCATACAGATATGTGTGTCTCTGTGTCTTTATA  500

seq1  TATATCTCATGTTATTTCTTTGGCT  525
      |||||||||||||||||||||||||
seq2  TATATCTCATGTTATTTCTTTGGCT  525

seq1: chr9_20317658_20318663
seq2: B6Ng01-262L03.g_69_1088 (reverse)

seq1  ACATGCATA-CAC-ACAGAATAAGAAAAAATAAATCCTATA-AAAAG-AA  46
      ||||||||| ||| ||||| || | |||||||||||||||| ||||| ||
seq2  ACATGCATACCACAACAGATTAGGTAAAAATAAATCCTATATAAAAGAAA  50

seq1  ACAGTCTGAGGATGTAGCTCAGCTGCCAGCATGCTTGCC-TAGCACTCAT  95
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  ACAGTCTGAGGATGTAGCTCAGCTGCCAGCATGCTTGCCTTAGCACTCAT  100

seq1  GGAACCCTGGTTACAT-CCCCAGCACGG-TAGCCAGGCTGCTGAGGAGAC  143
      |||||||||| ||||| ||||||||||| |||||||||||||||||||||
seq2  GGAACCCTGGGTACATACCCCAGCACGGTTAGCCAGGCTGCTGAGGAGAC  150

seq1  TGT-AAACCCAGCACGTGG-AAGGCGAGGAACAGCGTCATCCTT--GGCT  189
      ||| ||||||||||||||| ||||||||||||||||||||||||  | ||
seq2  TGTAAAACCCAGCACGTGGAAAGGCGAGGAACAGCGTCATCCTTTGGCCT  200

seq1  AGCGAGTGAG-TTCTAGGCGAGCCTGGG--ATACACAAGACCTTGCCTCA  236
      |||||||||| |||||||||||||||||   |||||||||||||||||||
seq2  AGCGAGTGAGTTTCTAGGCGAGCCTGGGGATTACACAAGACCTTGCCTCA  250

seq1  TAAAAAATTAATTTTTGTATTCTGAATAAACCCTTCTATCACTGTTCCCA  286
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAATTAATTTTTGTATTCTGAATAAACCCTTCTATCACTGTTCCCA  300

seq1  GGTATAGGCTACCTAGCAGCAAATTAAAAGAAGGGATTACTAGGCTAGCA  336
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATAGGCTACCTAGCAGCAAATTAAAAGAAGGGATTACTAGGCTAGCA  350

seq1  ATATGACTCAGTGGGTTAAGACTGACAGCCTGAGTTAATTCCTAAACCTA  386
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGACTCAGTGGGTTAAGACTGACAGCCTGAGTTAATTCCTAAACCTA  400

seq1  TAGTGGAAAGAGAAAACTCAGAGGCATCACTCTCACACACACAAACTCCT  436
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGGAAAGAGAAAACTCAGAGGCATCACTCTCACACACACAAACTCCT  450

seq1  CTCCCTCTCTCACCTGAGGTTACCCTGACTCCACAGTCATACGCACACAC  486
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCTCTCTCACCTGAGGTTACCCTGACTCCACAGTCATACGCACACAC  500

seq1  TCACACTTCATATAAACACATATGTCATACACACAGATGTTTTTAAAAAG  536
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACACTTCATATAAACACATATGTCATACACACAGATGTTTTTAAAAAG  550

seq1  CAGAAGATGAATGAATGTTTGCTGTTTGCCTTGCCAGGACACATGTACAG  586
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGATGAATGAATGTTTGCTGTTTGCCTTGCCAGGACACATGTACAG  600

seq1  TGACTCATAAGGAACTGCCCACCATTTGTCTGGACAATCAAGGGTATACA  636
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTCATAAGGAACTGCCCACCATTTGTCTGGACAATCAAGGGTATACA  650

seq1  AAGACAAGACTGGTGACAAGAACATCTGTATGAAGTTACTATGGGTATGG  686
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACAAGACTGGTGACAAGAACATCTGTATGAAGTTACTATGGGTATGG  700

seq1  AGCACACACTTTTAACTCCAACACTTGGAAGGGAATTCCAAGTCAGCTTA  736
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACACACTTTTAACTCCAACACTTGGAAGGGAATTCCAAGTCAGCTTA  750

seq1  GGCAACAGAGCCTGTCTCTATCTGCCCCCTCCTCTCCTGTCTATCTCTCT  786
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAACAGAGCCTGTCTCTATCTGCCCCCTCCTCTCCTGTCTATCTCTCT  800

seq1  ATCTGGCTGTCTCTGTCTCTCTCATACACACACACTGGACTGCCTTGTCT  836
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGGCTGTCTCTGTCTCTCTCATACACACACACTGGACTGCCTTGTCT  850

seq1  GAAAGGTTACAAGGTATCAGGTATCTGTGACCTGCCGAATCCCGTAGGTT  886
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGTTACAAGGTATCAGGTATCTGTGACCTGCCGAATCCCGTAGGTT  900

seq1  CACTGGCAGGATGCACTCAGTAGTACCGAGTGCTCACCTGGCAGCTCCAA  936
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGGCAGGATGCACTCAGTAGTACCGAGTGCTCACCTGGCAGCTCCAA  950

seq1  GGCCTGGCTTCACCCCTTACACAAGGTAAAGGGGATGTACTTGAGCTGTT  986
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTGGCTTCACCCCTTACACAAGGTAAAGGGGATGTACTTGAGCTGTT  1000

seq1  TGCAGTGCATCTTGGAATTC  1006
      ||||||||||||||||||||
seq2  TGCAGTGCATCTTGGAATTC  1020